Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02416 and RBAM_014250

See Amino acid alignment / Visit BSNT_02416 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:08
# Commandline: needle
#    -asequence dna-align/BSNT_02416___ykqB.1.9828.seq
#    -bsequence dna-align/RBAM_014250___ykqB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02416___ykqB-RBAM_014250___ykqB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02416___ykqB-RBAM_014250___ykqB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02416___ykqB
# 2: RBAM_014250___ykqB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 668
# Identity:     535/668 (80.1%)
# Similarity:   535/668 (80.1%)
# Gaps:           4/668 ( 0.6%)
# Score: 2129.0
# 
#
#=======================================

BSNT_02416___      1 ATGAAAAAAGAATTTGCGGTAATTGGGCTGGGCCGTTTTGGTGGCAGTAT     50
                     ||||.||||||.|||||.||.||.||.||.||.||.||.||.||.|||||
RBAM_014250__      1 ATGAGAAAAGAGTTTGCCGTTATCGGTCTCGGACGCTTCGGCGGAAGTAT     50

BSNT_02416___     51 TTGCAAAGCATTAAGCGAAGAAGGCGTCGAGGTTATGGCAATGGATATCG    100
                     |||||||||||||||.|||||||||.|.|||||.|||||.||||||||.|
RBAM_014250__     51 TTGCAAAGCATTAAGTGAAGAAGGCCTTGAGGTCATGGCGATGGATATTG    100

BSNT_02416___    101 ATGAAGATAAAGTCAACGAGTATGCCAAGATTGCATCTCACGCAGTTATC    150
                     |||||||||||||.||.||.||.|||||.||.|||||.|||||.||.|||
RBAM_014250__    101 ATGAAGATAAAGTAAATGAATACGCCAAAATCGCATCACACGCGGTCATC    150

BSNT_02416___    151 GGTGATTCGACAGACGAATCTGTCCTGAAAAATTTAGGCCTGCGAAATTT    200
                     ||.|||||.||.||.|||||.||.||||||||.|||||.|||||.||.||
RBAM_014250__    151 GGCGATTCAACCGATGAATCGGTGCTGAAAAACTTAGGGCTGCGCAACTT    200

BSNT_02416___    201 TGACCACGTTATTGTAGCAATCGGGGAAAATATTCAAGCGAGTATTTTAA    250
                     |||||||||.|||||.||||||||.||||||||.||.|||||.|||||||
RBAM_014250__    201 TGACCACGTCATTGTGGCAATCGGCGAAAATATACAGGCGAGCATTTTAA    250

BSNT_02416___    251 CGACACTCATTCTGAAA-GAACTTGGCGTCCATACGATTACAGTTAAAGC    299
                     ||||.||.| |||.||| |||||.|||||..|.|||||.||.||||||||
RBAM_014250__    251 CGACGCTGA-TCTTAAAGGAACTCGGCGTGAACACGATCACGGTTAAAGC    299

BSNT_02416___    300 GCAGAACGATTATCACGAAAAAGTGCTGTCTAAAATTGGTGCGGATCACA    349
                     |||||||||||||||.||.||||||||..|.|||||.||.||.|||||||
RBAM_014250__    300 GCAGAACGATTATCATGAGAAAGTGCTTGCGAAAATCGGGGCCGATCACA    349

BSNT_02416___    350 TCGTCCACCCGGAACGCGATATGGCAAAACGAATTGCGCATAATATCGTG    399
                     ||||||||||.|||||.||||||||||||||.||.||.||.||.|||||.
RBAM_014250__    350 TCGTCCACCCTGAACGTGATATGGCAAAACGCATCGCCCACAACATCGTA    399

BSNT_02416___    400 TCCAACAATGTACTTGACTATTTGGAGCTGTCTGAAGAGCATAGTCTTGT    449
                     ||.||.|||||.|||||.||||||||||||||.||.||.||.||..||||
RBAM_014250__    400 TCAAATAATGTGCTTGATTATTTGGAGCTGTCCGACGAACACAGCATTGT    449

BSNT_02416___    450 TGAAATCGTAGCTAACAGCCGCCTGGCTGGAAATACGCTTCTCGATTTAG    499
                     .||.|||||.||.||||||.|.||.||.||.||.||.||.||.|||.|.|
RBAM_014250__    450 GGAGATCGTGGCCAACAGCAGGCTTGCGGGCAACACACTGCTTGATCTGG    499

BSNT_02416___    500 ATATTCGCGCAAAATACGGTATTAACATCGTAGCCATAAAAAGGGGCAAG    549
                     |.||.||.||.||.|||||.|||||.|||||.|||||.||.||.|..||.
RBAM_014250__    500 ACATCCGGGCGAAGTACGGCATTAATATCGTGGCCATCAAGAGAGAAAAA    549

BSNT_02416___    550 GAAGTCATCGTATCACCGCTTGCAACCGAAGTCATCCACCAAGAAGATAT    599
                     |||||.||||||||.|||||.||.||.|||.|.|||||..||||||||||
RBAM_014250__    550 GAAGTGATCGTATCTCCGCTGGCGACTGAAATGATCCAAAAAGAAGATAT    599

BSNT_02416___    600 ACTCATTGTTATTGGATCAGTTACAGACATCTCCCGTTTCGAAAAAAGAG    649
                     .|||||.|||||.||.||..||||.|||||.|||||.||.||||||||||
RBAM_014250__    600 TCTCATCGTTATCGGCTCTCTTACGGACATTTCCCGATTTGAAAAAAGAG    649

BSNT_02416___    650 TTCTTCATACAAAATAG-    666
                     |.|||||.|||||.| | 
RBAM_014250__    650 TGCTTCACACAAAGT-GA    666


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