Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02413 and RBAM_014220

See Amino acid alignment / Visit BSNT_02413 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:08
# Commandline: needle
#    -asequence dna-align/BSNT_02413___abh.1.9828.seq
#    -bsequence dna-align/RBAM_014220___abh.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02413___abh-RBAM_014220___abh.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02413___abh-RBAM_014220___abh.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02413___abh
# 2: RBAM_014220___abh
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 285
# Identity:     224/285 (78.6%)
# Similarity:   224/285 (78.6%)
# Gaps:           6/285 ( 2.1%)
# Score: 887.5
# 
#
#=======================================

BSNT_02413___      1 ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGT     50
                     ||||||||.||.|||||.||.|||||||||||.|||.|.||.||.|||||
RBAM_014220__      1 ATGAAATCGATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGT     50

BSNT_02413___     51 CATGCCGATTGAGTTGAGACGGGCATTGGATATTGCCATAAAAGACAGCA    100
                     ||||||||||||.||||||.|.|||||||||||.||.||.|||||.||.|
RBAM_014220__     51 CATGCCGATTGAATTGAGAAGAGCATTGGATATCGCTATTAAAGATAGTA    100

BSNT_02413___    101 TTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCT    150
                     ||||.|||||.|||||||||||.||||||.||||||||||.|||||.||.
RBAM_014220__    101 TTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCG    150

BSNT_02413___    151 CATGGCGTTTGTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATA    200
                     ||.|||.||||.||||||||.||.|||||.|||.|.||||||.|.||.||
RBAM_014220__    151 CACGGCATTTGCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTA    200

BSNT_02413___    201 CGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAGCTGCTTCTCG    250
                     |||||||||.|||||||...||||.|||||.||.||..|..||||.||.|
RBAM_014220__    201 CGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAAATGCTGCTTG    250

BSNT_02413___    251 AAGAAATTCAAGCCGCTTTAAAAGA------ATAA    279
                     |.|||||..|.|..||.||||||||      ||||
RBAM_014220__    251 AGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA    285


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.