Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02399 and RBAM_014110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:07
# Commandline: needle
# -asequence dna-align/BSNT_02399___yknZ.1.9828.seq
# -bsequence dna-align/RBAM_014110___yknZ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02399___yknZ-RBAM_014110___yknZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02399___yknZ-RBAM_014110___yknZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02399___yknZ
# 2: RBAM_014110___yknZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1220
# Identity: 889/1220 (72.9%)
# Similarity: 889/1220 (72.9%)
# Gaps: 52/1220 ( 4.3%)
# Score: 3132.0
#
#
#=======================================
BSNT_02399___ 1 ATGAGCCTGTTAGAAAACATCAGAATGGCTCTAAGCTCTGTCCTTGCCCA 50
||||||||||.||||||..||.|.|||||.||.||.||.||....||.||
RBAM_014110__ 1 ATGAGCCTGTCAGAAAATCTCCGGATGGCCCTCAGTTCCGTAAGAGCTCA 50
BSNT_02399___ 51 TAAAATGCGTTCGATCTTAACGATGCTCGGCATTATCATTGGTGTAGGCT 100
.||..||.|.|||||..|.||.||||||||.||.||.||.||.||.||.|
RBAM_014110__ 51 CAAGCTGAGATCGATTCTGACAATGCTCGGAATCATTATCGGCGTCGGTT 100
BSNT_02399___ 101 CTGTCATTGTTGTCGTTGCGGTAGGACAAGGAGGCGAGCAAATGCTGAAG 150
|.||.||.|||||.||.||.||.||.||.||.||.|||||||||||||||
RBAM_014110__ 101 CAGTAATCGTTGTTGTGGCTGTCGGCCAGGGCGGAGAGCAAATGCTGAAG 150
BSNT_02399___ 151 CAGTCGATCAGCGGCCCGGGAAATACTGTGGAGCTGTACTATATGCCTAG 200
||.||.||||||||.|||||.|||||..|.||..|||..||.|||||.||
RBAM_014110__ 151 CAATCCATCAGCGGGCCGGGCAATACGATTGAATTGTTTTACATGCCCAG 200
BSNT_02399___ 201 CGACGAGGAGCTGGCAAGCAACCCGAACGCC--GCAGCTGAATCTACGTT 248
.||.||.||..|..||..|||.||||||||| .||| |||.|.|..||
RBAM_014110__ 201 TGATGAAGAATTAACAGCCAATCCGAACGCCTTACAG--GAAGCGAGTTT 248
BSNT_02399___ 249 TACAGAAAACGATATTAAAGGTTTAAAAGGAATAGAAGGCATTAAACAAG 298
|||||||.|.||||||||.||.|||||||||.|.||.|||.|.||.||.|
RBAM_014110__ 249 TACAGAAGAAGATATTAATGGATTAAAAGGAGTGGACGGCGTAAAGCAGG 298
BSNT_02399___ 299 TCGTTGCTTCGACTTCTG--AAAGT--ATGAAAGCGCGTTATCACGAAGA 344
|.||.|||||..| | |||.| ||||..||||||||.||.|||||
RBAM_014110__ 299 TTGTCGCTTCCGC----GGTAAAATCCATGACGGCGCGTTACCATGAAGA 344
BSNT_02399___ 345 AGAAACCGATGCTACGGTTAACGGAATAAATGATGGATACATGAATGTCA 394
|||.||.|||..||||.|.|||||.||.||....||.||||||.|.||.|
RBAM_014110__ 345 AGACACGGATATTACGCTGAACGGCATTAACAGCGGCTACATGGACGTAA 394
BSNT_02399___ 395 ATTCTTTAGAAA--TCGA-----AAG-----CGGCAGAACATTTACCGAC 432
| ||| |.|| ||| ||| ||||||||.||.
RBAM_014110__ 395 A--------AAAGCTGGACGTTCAAGATGGACGG----ACATTTACGGAT 432
BSNT_02399___ 433 AATGACTTTCTCGCGGGGAATAGAGCCGGAATCATCTCTCAAAAGATGGC 482
|||||.|||||..|.|||||.|||||.|||||||||||..||||.|||||
RBAM_014110__ 433 AATGATTTTCTTTCCGGGAAAAGAGCAGGAATCATCTCGAAAAAAATGGC 482
BSNT_02399___ 483 TGAAGAACTGTTCGATAAAACCTCCCCTTTAGGTGAAGTTGTCTGGATAA 532
||||.|.|||||||..|||||.||.||..|.||..||.|.||||||....
RBAM_014110__ 483 TGAAAAGCTGTTCGGGAAAACGTCTCCGCTCGGAAAAATCGTCTGGGCCG 532
BSNT_02399___ 533 ACGGACAGCCCGTTGAAATTATCGGTGTGCTGAAAAAAGAAACAGGCTTG 582
.||||||||||||||||.|.|||||.||.||||||.||||.|..|||||.
RBAM_014110__ 533 GCGGACAGCCCGTTGAAGTAATCGGCGTACTGAAAGAAGAGAGCGGCTTT 582
BSNT_02399___ 583 CTTTCTTTCGGTTTAAGTGAAATGTATGTGCCATTTAATATGATGAAATC 632
.|.||.||.||..|.|||||||||||||||||.||.||.|||.|||||.|
RBAM_014110__ 583 TTATCGTTAGGACTCAGTGAAATGTATGTGCCGTTCAACATGCTGAAAAC 632
BSNT_02399___ 633 CTCTTTTGGCACAAGCGATTTCAGTAACGTATCATTGCAGGTCGAATCAG 682
.|||||.||.||.|.|||.|.|||.|||||.||..|.|||...||.||.|
RBAM_014110__ 633 GTCTTTCGGTACTAACGACTACAGCAACGTTTCCGTTCAGACGGAGTCCG 682
BSNT_02399___ 683 CAGACGACATAAAATCGGCAGGAAAAGAAGCAGCACAGCTGGTAAATGAC 732
|.||..|.||.|||||..|||||||||||||.||.|..||..||||||||
RBAM_014110__ 683 CTGATCAAATCAAATCAACAGGAAAAGAAGCGGCCCGTCTCTTAAATGAC 732
BSNT_02399___ 733 AATCATGGCACAGAGGATTCGTATCAAGTGATGAACATGGAGGAGATTGC 782
|||||.||.|||.|.||..|.||||||||.|||||.|||||.||.||.||
RBAM_014110__ 733 AATCACGGTACAAAAGAGGCCTATCAAGTCATGAATATGGAAGAAATCGC 782
BSNT_02399___ 783 GGCCGGAATTGGCAAGGTAACGGCAATTATGACGACGATTATCGGCTCAA 832
|||.|||||.|||.||||.|||.|..|||||||||||||.|||||.||.|
RBAM_014110__ 783 GGCGGGAATCGGCCAGGTCACGACCGTTATGACGACGATCATCGGTTCGA 832
BSNT_02399___ 833 TTGCAGGTATTTCCCTTTTGGTCGGCGGAATCGGTGTCATGAATATCATG 882
|.||.||||||||.||..|.||||||||.|||||.|||||||||||.|||
RBAM_014110__ 833 TCGCCGGTATTTCTCTCGTTGTCGGCGGGATCGGGGTCATGAATATTATG 882
BSNT_02399___ 883 CTCGTATCAGTCACAGAACGGACACGGGAAATTGGAATCAGAAAATCCCT 932
|||||||||||.||.|||||||||.|.|||||.||.|||.|.|||||.||
RBAM_014110__ 883 CTCGTATCAGTGACGGAACGGACAAGAGAAATCGGCATCCGCAAATCGCT 932
BSNT_02399___ 933 CGGTGCGACGAGGGGACAGATTCTGACTCAGTTTTTAATTGAGTCAGTCG 982
||||||.|||||.||||||||||||||.||.||.||||||||.||.||.|
RBAM_014110__ 933 CGGTGCCACGAGAGGACAGATTCTGACACAATTCTTAATTGAATCTGTTG 982
BSNT_02399___ 983 TATTGACGCTGATTGGCGGTCTGGTCGGGAT-TGGCATTGGATACGGAGG 1031
|..|.||..|.||.|||||..|..||||.|| ||.| |.||.|||||.||
RBAM_014110__ 983 TGCTTACATTAATCGGCGGCTTAATCGGAATCTGTC-TCGGCTACGGGGG 1031
BSNT_02399___ 1032 GGCCGGGCTTGTTTCAGCC--ATTGCGGGCTGGCCGTCACTCATATCCTG 1079
.||....||.||||| || ||.||.|||||||||||.|||.|.|||||
RBAM_014110__ 1032 AGCATCACTCGTTTC--CCTTATCGCAGGCTGGCCGTCGCTCGTTTCCTG 1079
BSNT_02399___ 1080 GCAGG----TTGTATGCGGGGGCGTGCTGTTCAGTATGCTCATTGGTGTT 1125
||||| |||||| .||.|||||||||||||||||.||.|||||.
RBAM_014110__ 1080 GCAGGTGGTTTGTAT----CGGTGTGCTGTTCAGTATGCTGATCGGTGTC 1125
BSNT_02399___ 1126 ATTTTCGGCATGCTTCCTGCAAATAAAGCTGCAAAGCTT-GATCCCATTG 1174
||||||||||||||.||.||.||.|||||..| |.|||| |||||.||||
RBAM_014110__ 1126 ATTTTCGGCATGCTGCCCGCCAACAAAGCATC-ACGCTTAGATCCGATTG 1174
BSNT_02399___ 1175 AAGCGCTGCGTTATGAGTAG 1194
|||||.|.||.|||||.||.
RBAM_014110__ 1175 AAGCGTTACGGTATGAATAA 1194
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