Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02399 and RBAM_014110

See Amino acid alignment / Visit BSNT_02399 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:07
# Commandline: needle
#    -asequence dna-align/BSNT_02399___yknZ.1.9828.seq
#    -bsequence dna-align/RBAM_014110___yknZ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02399___yknZ-RBAM_014110___yknZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02399___yknZ-RBAM_014110___yknZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02399___yknZ
# 2: RBAM_014110___yknZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1220
# Identity:     889/1220 (72.9%)
# Similarity:   889/1220 (72.9%)
# Gaps:          52/1220 ( 4.3%)
# Score: 3132.0
# 
#
#=======================================

BSNT_02399___      1 ATGAGCCTGTTAGAAAACATCAGAATGGCTCTAAGCTCTGTCCTTGCCCA     50
                     ||||||||||.||||||..||.|.|||||.||.||.||.||....||.||
RBAM_014110__      1 ATGAGCCTGTCAGAAAATCTCCGGATGGCCCTCAGTTCCGTAAGAGCTCA     50

BSNT_02399___     51 TAAAATGCGTTCGATCTTAACGATGCTCGGCATTATCATTGGTGTAGGCT    100
                     .||..||.|.|||||..|.||.||||||||.||.||.||.||.||.||.|
RBAM_014110__     51 CAAGCTGAGATCGATTCTGACAATGCTCGGAATCATTATCGGCGTCGGTT    100

BSNT_02399___    101 CTGTCATTGTTGTCGTTGCGGTAGGACAAGGAGGCGAGCAAATGCTGAAG    150
                     |.||.||.|||||.||.||.||.||.||.||.||.|||||||||||||||
RBAM_014110__    101 CAGTAATCGTTGTTGTGGCTGTCGGCCAGGGCGGAGAGCAAATGCTGAAG    150

BSNT_02399___    151 CAGTCGATCAGCGGCCCGGGAAATACTGTGGAGCTGTACTATATGCCTAG    200
                     ||.||.||||||||.|||||.|||||..|.||..|||..||.|||||.||
RBAM_014110__    151 CAATCCATCAGCGGGCCGGGCAATACGATTGAATTGTTTTACATGCCCAG    200

BSNT_02399___    201 CGACGAGGAGCTGGCAAGCAACCCGAACGCC--GCAGCTGAATCTACGTT    248
                     .||.||.||..|..||..|||.|||||||||  .|||  |||.|.|..||
RBAM_014110__    201 TGATGAAGAATTAACAGCCAATCCGAACGCCTTACAG--GAAGCGAGTTT    248

BSNT_02399___    249 TACAGAAAACGATATTAAAGGTTTAAAAGGAATAGAAGGCATTAAACAAG    298
                     |||||||.|.||||||||.||.|||||||||.|.||.|||.|.||.||.|
RBAM_014110__    249 TACAGAAGAAGATATTAATGGATTAAAAGGAGTGGACGGCGTAAAGCAGG    298

BSNT_02399___    299 TCGTTGCTTCGACTTCTG--AAAGT--ATGAAAGCGCGTTATCACGAAGA    344
                     |.||.|||||..|    |  |||.|  ||||..||||||||.||.|||||
RBAM_014110__    299 TTGTCGCTTCCGC----GGTAAAATCCATGACGGCGCGTTACCATGAAGA    344

BSNT_02399___    345 AGAAACCGATGCTACGGTTAACGGAATAAATGATGGATACATGAATGTCA    394
                     |||.||.|||..||||.|.|||||.||.||....||.||||||.|.||.|
RBAM_014110__    345 AGACACGGATATTACGCTGAACGGCATTAACAGCGGCTACATGGACGTAA    394

BSNT_02399___    395 ATTCTTTAGAAA--TCGA-----AAG-----CGGCAGAACATTTACCGAC    432
                     |        |||  |.||     |||     |||    ||||||||.||.
RBAM_014110__    395 A--------AAAGCTGGACGTTCAAGATGGACGG----ACATTTACGGAT    432

BSNT_02399___    433 AATGACTTTCTCGCGGGGAATAGAGCCGGAATCATCTCTCAAAAGATGGC    482
                     |||||.|||||..|.|||||.|||||.|||||||||||..||||.|||||
RBAM_014110__    433 AATGATTTTCTTTCCGGGAAAAGAGCAGGAATCATCTCGAAAAAAATGGC    482

BSNT_02399___    483 TGAAGAACTGTTCGATAAAACCTCCCCTTTAGGTGAAGTTGTCTGGATAA    532
                     ||||.|.|||||||..|||||.||.||..|.||..||.|.||||||....
RBAM_014110__    483 TGAAAAGCTGTTCGGGAAAACGTCTCCGCTCGGAAAAATCGTCTGGGCCG    532

BSNT_02399___    533 ACGGACAGCCCGTTGAAATTATCGGTGTGCTGAAAAAAGAAACAGGCTTG    582
                     .||||||||||||||||.|.|||||.||.||||||.||||.|..|||||.
RBAM_014110__    533 GCGGACAGCCCGTTGAAGTAATCGGCGTACTGAAAGAAGAGAGCGGCTTT    582

BSNT_02399___    583 CTTTCTTTCGGTTTAAGTGAAATGTATGTGCCATTTAATATGATGAAATC    632
                     .|.||.||.||..|.|||||||||||||||||.||.||.|||.|||||.|
RBAM_014110__    583 TTATCGTTAGGACTCAGTGAAATGTATGTGCCGTTCAACATGCTGAAAAC    632

BSNT_02399___    633 CTCTTTTGGCACAAGCGATTTCAGTAACGTATCATTGCAGGTCGAATCAG    682
                     .|||||.||.||.|.|||.|.|||.|||||.||..|.|||...||.||.|
RBAM_014110__    633 GTCTTTCGGTACTAACGACTACAGCAACGTTTCCGTTCAGACGGAGTCCG    682

BSNT_02399___    683 CAGACGACATAAAATCGGCAGGAAAAGAAGCAGCACAGCTGGTAAATGAC    732
                     |.||..|.||.|||||..|||||||||||||.||.|..||..||||||||
RBAM_014110__    683 CTGATCAAATCAAATCAACAGGAAAAGAAGCGGCCCGTCTCTTAAATGAC    732

BSNT_02399___    733 AATCATGGCACAGAGGATTCGTATCAAGTGATGAACATGGAGGAGATTGC    782
                     |||||.||.|||.|.||..|.||||||||.|||||.|||||.||.||.||
RBAM_014110__    733 AATCACGGTACAAAAGAGGCCTATCAAGTCATGAATATGGAAGAAATCGC    782

BSNT_02399___    783 GGCCGGAATTGGCAAGGTAACGGCAATTATGACGACGATTATCGGCTCAA    832
                     |||.|||||.|||.||||.|||.|..|||||||||||||.|||||.||.|
RBAM_014110__    783 GGCGGGAATCGGCCAGGTCACGACCGTTATGACGACGATCATCGGTTCGA    832

BSNT_02399___    833 TTGCAGGTATTTCCCTTTTGGTCGGCGGAATCGGTGTCATGAATATCATG    882
                     |.||.||||||||.||..|.||||||||.|||||.|||||||||||.|||
RBAM_014110__    833 TCGCCGGTATTTCTCTCGTTGTCGGCGGGATCGGGGTCATGAATATTATG    882

BSNT_02399___    883 CTCGTATCAGTCACAGAACGGACACGGGAAATTGGAATCAGAAAATCCCT    932
                     |||||||||||.||.|||||||||.|.|||||.||.|||.|.|||||.||
RBAM_014110__    883 CTCGTATCAGTGACGGAACGGACAAGAGAAATCGGCATCCGCAAATCGCT    932

BSNT_02399___    933 CGGTGCGACGAGGGGACAGATTCTGACTCAGTTTTTAATTGAGTCAGTCG    982
                     ||||||.|||||.||||||||||||||.||.||.||||||||.||.||.|
RBAM_014110__    933 CGGTGCCACGAGAGGACAGATTCTGACACAATTCTTAATTGAATCTGTTG    982

BSNT_02399___    983 TATTGACGCTGATTGGCGGTCTGGTCGGGAT-TGGCATTGGATACGGAGG   1031
                     |..|.||..|.||.|||||..|..||||.|| ||.| |.||.|||||.||
RBAM_014110__    983 TGCTTACATTAATCGGCGGCTTAATCGGAATCTGTC-TCGGCTACGGGGG   1031

BSNT_02399___   1032 GGCCGGGCTTGTTTCAGCC--ATTGCGGGCTGGCCGTCACTCATATCCTG   1079
                     .||....||.|||||  ||  ||.||.|||||||||||.|||.|.|||||
RBAM_014110__   1032 AGCATCACTCGTTTC--CCTTATCGCAGGCTGGCCGTCGCTCGTTTCCTG   1079

BSNT_02399___   1080 GCAGG----TTGTATGCGGGGGCGTGCTGTTCAGTATGCTCATTGGTGTT   1125
                     |||||    ||||||    .||.|||||||||||||||||.||.|||||.
RBAM_014110__   1080 GCAGGTGGTTTGTAT----CGGTGTGCTGTTCAGTATGCTGATCGGTGTC   1125

BSNT_02399___   1126 ATTTTCGGCATGCTTCCTGCAAATAAAGCTGCAAAGCTT-GATCCCATTG   1174
                     ||||||||||||||.||.||.||.|||||..| |.|||| |||||.||||
RBAM_014110__   1126 ATTTTCGGCATGCTGCCCGCCAACAAAGCATC-ACGCTTAGATCCGATTG   1174

BSNT_02399___   1175 AAGCGCTGCGTTATGAGTAG   1194
                     |||||.|.||.|||||.||.
RBAM_014110__   1175 AAGCGTTACGGTATGAATAA   1194


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