Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02398 and RBAM_014100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:07
# Commandline: needle
# -asequence dna-align/BSNT_02398___yknY.1.9828.seq
# -bsequence dna-align/RBAM_014100___yknY.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02398___yknY-RBAM_014100___yknY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02398___yknY-RBAM_014100___yknY.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02398___yknY
# 2: RBAM_014100___yknY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 717
# Identity: 544/717 (75.9%)
# Similarity: 544/717 (75.9%)
# Gaps: 48/717 ( 6.7%)
# Score: 2063.0
#
#
#=======================================
BSNT_02398___ 1 ATGATTCAGCTTTCTAATGTGCGAAAAAGCTATCAGATCGGAAAGGAAAC 50
||||||||||||||.||.|||..||||||||||||||||||.|||||.||
RBAM_014100__ 1 ATGATTCAGCTTTCAAAGGTGAAAAAAAGCTATCAGATCGGCAAGGAGAC 50
BSNT_02398___ 51 GTTTGATGTTCTCCATTCTATTGATTTGGAC-ATTCATCAAGGTGAATAT 99
||||||||||||||.|||.||.||.|| ||| |||.|..||||.||||||
RBAM_014100__ 51 GTTTGATGTTCTCCGTTCAATCGACTT-GACGATTGAAGAAGGAGAATAT 99
BSNT_02398___ 100 GTCTCGATTATGGGGCCGTCAGGATCAGGAAAATCGACGATCATGAATAT 149
||.||.||||||||.|||||.|||||.||||||||.||||||||||||||
RBAM_014100__ 100 GTGTCAATTATGGGACCGTCGGGATCGGGAAAATCTACGATCATGAATAT 149
BSNT_02398___ 150 TATCGGCTGTCTTGATCGGCCGACTTCCGG----TACATATCAATTGGAC 195
.|||||||||||.||..|.|||||.||||| |||| |.|
RBAM_014100__ 150 CATCGGCTGTCTGGACAGACCGACGTCCGGCAGTTACA---------GGC 190
BSNT_02398___ 196 -----GGCGAAGACATTTCTTCATATAAAGATAAAGAACTGGCGGCAGTC 240
||||||||..|||||||||..|..||.|||||.||.|||||.|||
RBAM_014100__ 191 TTGCGGGCGAAGATGTTTCTTCATGCACCGAAAAAGAGCTTGCGGCGGTC 240
BSNT_02398___ 241 CGTAACCGGTCCATCGGTTTTGTGTTTCAGCAATTTCAGCTTCTTCCGCG 290
||.|||...||.|||||.|||||.|||||||||||||||||.||.|||||
RBAM_014100__ 241 CGGAACAAATCAATCGGATTTGTCTTTCAGCAATTTCAGCTGCTGCCGCG 290
BSNT_02398___ 291 GCTGAACGCAAAAAAAAATGTCGAGCTGCCGATGATTTATTCCGGGATAG 340
..||||.||||.||||||||||||.||.||.|||||.||..||||.||.|
RBAM_014100__ 291 ATTGAATGCAAGAAAAAATGTCGAACTCCCCATGATCTACGCCGGTATCG 340
BSNT_02398___ 341 GCAAAAAGGAACGTCAAGAGCGGGCTGAGAGAGCAT----TGGAAAAGGT 386
|||||||.||.|||.|.||.|||||| |||||| |||||||.||
RBAM_014100__ 341 GCAAAAAAGAGCGTGAGGAACGGGCT----GAGCATGCGCTGGAAAAAGT 386
BSNT_02398___ 387 CGGGTTAGCAAATCGAATGCTCCACATGCCCAACGAGCTGTCTGGCGGGC 436
|||.||.||..||||.||||..||||||||.||.||||||||.|||||.|
RBAM_014100__ 387 CGGTTTGGCGGATCGGATGCGTCACATGCCGAATGAGCTGTCGGGCGGCC 436
BSNT_02398___ 437 AGAAGCAGCGGGTGGCGATTGCGAGGGCGATCGTGAATGAGCCCAAATTG 486
||||||||||.||.||||||||.||.||.||||||||.||.||.||..|.
RBAM_014100__ 437 AGAAGCAGCGTGTCGCGATTGCAAGAGCCATCGTGAACGAACCGAAGCTC 486
BSNT_02398___ 487 ATTTTAGCTGATGAACCGACCGGCGCGCTAGATACGAAAACAAGCGAGGC 536
||||||||||||||||||||||||||.||.|||||||||||||||....|
RBAM_014100__ 487 ATTTTAGCTGATGAACCGACCGGCGCACTGGATACGAAAACAAGCATTTC 536
BSNT_02398___ 537 GATTATGGATCAGTTTACAGCATTAAATGCCGAGGGAACGACAATCGTTC 586
.||||||||.|||||.||||...|.|||||.|||||...|||..|.||.|
RBAM_014100__ 537 CATTATGGAGCAGTTCACAGAGCTTAATGCAGAGGGCGTGACCGTGGTGC 586
BSNT_02398___ 587 TGGTTACTCACGAGCCTGAAGTAGCAGATTGCACGAATCGGA-------T 629
|.||.|||||.|||||||||||.||.||.||.|| ||.|.|| |
RBAM_014100__ 587 TTGTGACTCATGAGCCTGAAGTGGCGGACTGTAC-AAACAGAGTGATTTT 635
BSNT_02398___ 630 CGTCATGGTGCGTGACGGAAACATTG-TTCCTGCCA-GCTCCGGA-CAAA 676
|||| ||||||||.|..||.| ||||.||.| ||| || ||.|
RBAM_014100__ 636 CGTC------CGTGACGGCATGATCGTTTCCCGCGATGCT---GAGCAGA 676
BSNT_02398___ 677 GGAGTGTGGGAGAATGA 693
||||.|||||.||||||
RBAM_014100__ 677 GGAGAGTGGGGGAATGA 693
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