Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02376 and RBAM_014000

See Amino acid alignment / Visit BSNT_02376 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:06
# Commandline: needle
#    -asequence dna-align/BSNT_02376___rok.1.9828.seq
#    -bsequence dna-align/RBAM_014000___rok.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02376___rok-RBAM_014000___rok.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02376___rok-RBAM_014000___rok.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02376___rok
# 2: RBAM_014000___rok
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 597
# Identity:     477/597 (79.9%)
# Similarity:   477/597 (79.9%)
# Gaps:          21/597 ( 3.5%)
# Score: 1950.0
# 
#
#=======================================

BSNT_02376___      1 ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGA     50
                     ||||||||||||||||||||..|||||||.||.|||||||||||.||.||
RBAM_014000__      1 ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGA     50

BSNT_02376___     51 AGCTGAAGTGAAAGTCATTCGTGAATATCAAATTGAACGTGATAAAATAT    100
                     |||.||.||.|||||||||||||||||||||||.||||||||||||||||
RBAM_014000__     51 AGCAGAGGTAAAAGTCATTCGTGAATATCAAATAGAACGTGATAAAATAT    100

BSNT_02376___    101 ACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAA    150
                     |.||||||.|.|||||..|.||||..|..||.||||..|||||.|..|||
RBAM_014000__    101 ATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAA    150

BSNT_02376___    151 AAGGATTTCCGTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGA    200
                     ||.||.||.|||.|.||.||||||..|||||||||.||.||.||.||.||
RBAM_014000__    151 AAAGAGTTTCGTCCGGAGAAAAAAAGTGACTCTCTCCCTGTGCTTGCAGA    200

BSNT_02376___    201 GCTTGCGGCTCAGGAAATCAGAAGCTATC---AGCCGCAATCACAGCAGC    247
                     ||||||.||.||||||||.||||||||||   |||||||..||||||..|
RBAM_014000__    201 GCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAGGCACAGCCTC    250

BSNT_02376___    248 AGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATA    297
                     |.||....|||||.|||.|.||.||||||.|.||||||||.|||||.||.
RBAM_014000__    251 AATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATT    300

BSNT_02376___    298 CCAGACGGAACAACACGAAGAAGAAGAGGAACGGCAAGACCGGGATCAAA    347
                     ||||||||..|.|||.|||||||||||||.|||||.||||||||||||||
RBAM_014000__    301 CCAGACGGTTCTACAAGAAGAAGAAGAGGGACGGCGAGACCGGGATCAAA    350

BSNT_02376___    348 AGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACG    397
                     |||.||.||.|||||.|||||.||.|||||||||||.|||||||||||.|
RBAM_014000__    351 AGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG    400

BSNT_02376___    398 CGGCGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGT    447
                     |.||||||||.||.||.||.||.|||||.||.||||||||.||||||||.
RBAM_014000__    401 CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGC    450

BSNT_02376___    448 CTTGAAATCCCTAATATGACAACATTTATGCAAAGCTTAATTAAAATGTA    497
                     ||||||||.|||||||||||||||||||||||||||||||||||||||||
RBAM_014000__    451 CTTGAAATTCCTAATATGACAACATTTATGCAAAGCTTAATTAAAATGTA    500

BSNT_02376___    498 CCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAA    547
                     .||||||||||||||.|||||.|||||.||.||.|||.|.|||||.||||
RBAM_014000__    501 TCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAA    550

BSNT_02376___    548 T------CGAATCTGCAGAATCAGCAAA------------TGAATAA    576
                     |      .|||.|.||||||.|.|||||            |||||||
RBAM_014000__    551 TTTCTCAGGAAACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA    597


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