Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02355 and RBAM_013860
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:04
# Commandline: needle
# -asequence dna-align/BSNT_02355___ykuI.1.9828.seq
# -bsequence dna-align/RBAM_013860___ykuI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02355___ykuI-RBAM_013860___ykuI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02355___ykuI-RBAM_013860___ykuI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02355___ykuI
# 2: RBAM_013860___ykuI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1237
# Identity: 983/1237 (79.5%)
# Similarity: 983/1237 (79.5%)
# Gaps: 29/1237 ( 2.3%)
# Score: 3848.5
#
#
#=======================================
BSNT_02355___ 1 ATGTTGGATCCACTTGATATTTTAACGAACATTGATGATGTCCTTCCATA 50
||||||||.|||||||||||..|.|||||.||||||||||||.||||.||
RBAM_013860__ 1 ATGTTGGACCCACTTGATATACTGACGAATATTGATGATGTCATTCCGTA 50
BSNT_02355___ 51 TTACCAGGCGATTTTTAGTGCCGAGGAGCAGAAG-GTTGTCGGATATGAG 99
||||||.||||||||||..||.|||||.|| ||| ||.||.||.||.||.
RBAM_013860__ 51 TTACCAAGCGATTTTTAACGCTGAGGAACA-AAGAGTCGTAGGCTACGAA 99
BSNT_02355___ 100 GTGCTTGGACGAATTTTGGCAGATTCAGAAATCCAAAGTCTCGGGCCCTT 149
||||||||.||.||||||||||||.|.||.||..|.||.||.|||||.||
RBAM_013860__ 100 GTGCTTGGGCGGATTTTGGCAGATGCGGAGATTGAGAGCCTTGGGCCGTT 149
BSNT_02355___ 150 CTTTTTAGATGCGGGGATACCCGAAGAATATAAACTAGAGGTTGATAACA 199
.||.||||||.|.||.||.||.|||||||||||.||.|||||.|||.|||
RBAM_013860__ 150 TTTCTTAGATTCCGGCATTCCGGAAGAATATAAGCTTGAGGTCGATGACA 199
BSNT_02355___ 200 GAATTATCCGCCAGGCTCTTGACCGCTTTTTAGAGGCGGATTCTGATCTG 249
||.|.|||.|.|||||.||.||..|.|||..|||.||.|||..|||||||
RBAM_013860__ 200 GAGTCATCAGGCAGGCGCTGGAGAGGTTTAAAGAAGCTGATCGTGATCTG 249
BSNT_02355___ 250 CTGATTTTTATGAATCAGGATGCCAATCTGCTGATGCTGGATCATGGTGA 299
.||||||||||.|||||||||||.|||.|..|||||||.||.||.||.||
RBAM_013860__ 250 TTGATTTTTATCAATCAGGATGCGAATGTATTGATGCTTGACCACGGCGA 299
BSNT_02355___ 300 AAGCTTTCTGGAGCTTCTGAAAGAATATGAAGCGAAGGGAATCGAACTCC 349
|||||||||.||||||.||||||||||.||||.|.||||.||.|||.|..
RBAM_013860__ 300 AAGCTTTCTTGAGCTTTTGAAAGAATACGAAGAGCAGGGCATTGAATTGA 349
BSNT_02355___ 350 ACCGTTTTGTTCTTGAAATTACAGAGCACAATTTTGAAGGGGATATTGAG 399
|||||.||||.|||||.||.||.|||||||||||.|||||.||.|||||.
RBAM_013860__ 350 ACCGTATTGTGCTTGAGATCACCGAGCACAATTTCGAAGGCGACATTGAA 399
BSNT_02355___ 400 CAGCTCTACCATATGCTTGCATACTATCGTACATACGGAATTAAAATCGC 449
|||||.||||||||||||||.|||||||||||||||||.|||||||||||
RBAM_013860__ 400 CAGCTGTACCATATGCTTGCCTACTATCGTACATACGGCATTAAAATCGC 449
BSNT_02355___ 450 AGTTGACAACATCGGAAAAGAAAGCAGCAACTTGGACAGAATCGCGCTGC 499
.||.|||||.||.||.||.||.|||||||||.||||||||||||||||.|
RBAM_013860__ 450 GGTGGACAATATAGGTAAGGAGAGCAGCAACCTGGACAGAATCGCGCTCC 499
BSNT_02355___ 500 TCTCACCAGATCTGTTAAAAATCGATTTGCAGGCGCTGAAAGTGTCACAG 549
|.|||||.||.||..|.|||||.|||||||||||||||||.||.||.|||
RBAM_013860__ 500 TTTCACCGGACCTTCTGAAAATAGATTTGCAGGCGCTGAAGGTATCTCAG 549
BSNT_02355___ 550 CCGTCACCGTCATATGAGCATGTGCTGTACAGCATATCTTTATTAGCAAG 599
||||||||.||||||||||||||||||||||||||.||.||..|.||.||
RBAM_013860__ 550 CCGTCACCATCATATGAGCATGTGCTGTACAGCATTTCATTGCTGGCGAG 599
BSNT_02355___ 600 AAAAATCGGTGCGGCGCTATTGTATGAAGACATTGAGGCGAACTTCCAGC 649
|||||||||.||.||.||..||||||||||.||.||.||..|.|||||||
RBAM_013860__ 600 AAAAATCGGCGCCGCACTGCTGTATGAAGATATAGAAGCTGATTTCCAGC 649
BSNT_02355___ 650 TACAGTACGCCTGGAGAAACGGAGGCCGTTATTTTCAGGGCTATTACTTG 699
|.||||||||.|||||||||||||||||.|.||||||.||||||||..||
RBAM_013860__ 650 TCCAGTACGCATGGAGAAACGGAGGCCGATTTTTTCAAGGCTATTATCTG 699
BSNT_02355___ 700 GTGTCTCC-ATCTGAAACGTTTCTAGAGA---GAG-ATGTATTAAAACAA 744
..|.|.|| |.|.| ||.||.||.||| ||| .|| ||||||..|
RBAM_013860__ 700 CAGGCGCCGAGCGG---CGATTTTATAGACCGGAGCCTG--TTAAAAGCA 744
BSNT_02355___ 745 AGACTT-AAAACTGAATTTCACCAATTTATCAC-ACATGAGAAAAAGAAA 792
.| ||| |||||.||.|||||.||||||||||| |.| ||.||||||||.
RBAM_013860__ 745 CG-CTTGAAAACGGAGTTTCAGCAATTTATCACGAGA-GAAAAAAAGAAG 792
BSNT_02355___ 793 CTGGAGACCGTCTATGAGCACTCTGAACAGTTTTACAAACGAGTGCATCA 842
|||||.||.||.|||||.||||||||..|.|||||.||.||.||..||||
RBAM_013860__ 793 CTGGAAACGGTATATGAACACTCTGAGAATTTTTATAAGCGGGTCAATCA 842
BSNT_02355___ 843 GGCTGT----GACCTCTTTGAGAAAAAACAATCTGTCTTCTGATGATGAC 888
|||.|| ||.| |||..||||.|.|||.| .|.||.|||||.
RBAM_013860__ 843 GGCAGTTTCCGAAC----TGAAGAAAACCCATCAG---GCGGACGATGAG 885
BSNT_02355___ 889 TTTATTAAAAAGCTGGCGGAAGAGCTGACAGATTGCAGCTTCAGGATTTA 938
|||||||||||.|||||||||.|.|||||.||.|||.|.|||||.|||||
RBAM_013860__ 886 TTTATTAAAAAACTGGCGGAAAACCTGACGGACTGCTGTTTCAGAATTTA 935
BSNT_02355___ 939 CATGTGTGATGAAGAAGGCGATCAGCTGACGGGAAATGTGTTTAAGCAAG 988
.||||||||||||||||||.||||||||||||||||||||||.|||||..
RBAM_013860__ 936 TATGTGTGATGAAGAAGGCTATCAGCTGACGGGAAATGTGTTCAAGCAGT 985
BSNT_02355___ 989 ATGGAGAATGGATTTATCAGCCGGAATATGCGGAAAAGAACTGGAGCTGG 1038
..||.||||||.||||||||||.|||||...|||.||.||||||||||||
RBAM_013860__ 986 CCGGCGAATGGCTTTATCAGCCTGAATACATGGAGAAAAACTGGAGCTGG 1035
BSNT_02355___ 1039 CGCCCTTATTTTCTGGAGAACATTATGAGAATGAGAAATCTC-AGAAAAG 1087
||.||.||.|||.|.||.|||||.||||..|||.|.||| || |||||||
RBAM_013860__ 1036 CGTCCGTACTTTTTAGAAAACATCATGAAGATGCGGAAT-TCAAGAAAAG 1084
BSNT_02355___ 1088 GTTTTTTCAGTGATCTGTACAGTGATTTGGAAACAGGTGAAATGATCAGA 1137
|||||||||||||.||||||||||||.|.||.||||||||.|||||||||
RBAM_013860__ 1085 GTTTTTTCAGTGACCTGTACAGTGATATTGAGACAGGTGAGATGATCAGA 1134
BSNT_02355___ 1138 ACGTTTTCATATCCGATGGATGATCAGATGTATTTATTTATAGACTTGCC 1187
||.||||||||.|||||||||||..|.||||||||||||||.||..||||
RBAM_013860__ 1135 ACCTTTTCATACCCGATGGATGACAATATGTATTTATTTATCGATCTGCC 1184
BSNT_02355___ 1188 TTATTCTTATTTATATGAGCAGGACGGACTGATTTAA 1224
|||.||||||||||||||.||||||||..|..|||||
RBAM_013860__ 1185 TTACTCTTATTTATATGAACAGGACGGGTTACTTTAA 1221
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