Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02323 and RBAM_013630
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:01
# Commandline: needle
# -asequence dna-align/BSNT_02323___ykvY.1.9828.seq
# -bsequence dna-align/RBAM_013630___ykvY.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02323___ykvY-RBAM_013630___ykvY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02323___ykvY-RBAM_013630___ykvY.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02323___ykvY
# 2: RBAM_013630___ykvY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1121
# Identity: 846/1121 (75.5%)
# Similarity: 846/1121 (75.5%)
# Gaps: 52/1121 ( 4.6%)
# Score: 3181.0
#
#
#=======================================
BSNT_02323___ 1 GTGAATAGAATACAACGCGTCTCTTCATGGCTGAAGGAAGCGGGGCATAC 50
.||||.|||.||.||||.||.||.||.||||||||..|||..||.|||..
RBAM_013630__ 1 ATGAACAGATTAGAACGTGTTTCATCTTGGCTGAAAAAAGAAGGACATGA 50
BSNT_02323___ 51 TGCCGCATTTATTCATACAAAAGAAAATGTTTTTTACTTAACCGGTTTTT 100
|||.||.|||||.||||||||.|||||.||.|||||.|||||.|.|||||
RBAM_013630__ 51 TGCGGCGTTTATACATACAAAGGAAAACGTATTTTATTTAACTGATTTTT 100
BSNT_02323___ 101 ACACAGAGCCGCATGAAAGATTAATGGGGTTATTTATTTTTCAAGAAGAG 150
||||.||.||||||||..|.||||||||.||.||..|.|||||.|||.||
RBAM_013630__ 101 ACACGGATCCGCATGAGCGGTTAATGGGATTGTTCCTGTTTCAGGAACAG 150
BSNT_02323___ 151 GAGCCTTTCTTTGTTTGTCCAGGAATGGAAGCAGGACAGGCCCGCAACGC 200
|||||.||.||.||||||||.|||||||||||.|||||.|||||||.|||
RBAM_013630__ 151 GAGCCGTTTTTCGTTTGTCCGGGAATGGAAGCCGGACAAGCCCGCAGCGC 200
BSNT_02323___ 201 AGGCTGGAATCATGAAATCATTGGCTATGCGGATCACGAAAATCCGTGGG 250
.||.|||.|.|||||.||.||.|||||.|..|||||||||.|||||||||
RBAM_013630__ 201 CGGGTGGGAGCATGATATTATCGGCTACGGCGATCACGAAGATCCGTGGG 250
BSNT_02323___ 251 AGCTGAT-AGAGAAG-GCTTTGAAAAAGCGAAATATCAGCATACATATGC 298
||||||| |.||..| || |.|.|||.||||||.|..| ||
RBAM_013630__ 251 AGCTGATCAAAGCCGAGC--TCACAAAACGAAATGTGCG---------GC 289
BSNT_02323___ 299 TT---------GCGGTAGAAAAGGATTCAATCTCGCTGTCACGTGCAGAA 339
|| |||||.|||||||||||.|||||.||.||.||..|||||
RBAM_013630__ 290 TTGATTCCATCGCGGTTGAAAAGGATTCGATCTCTCTTTCCCGCTCAGAA 339
BSNT_02323___ 340 CAGCTGAAGCATGCGAC---GGGCGGGGCTCAATTTGTTTCAGCAGAAGA 386
|||||.||.||.||..| |||||.||| |||||||||.||||||||
RBAM_013630__ 340 CAGCTCAAACAAGCTTCAGGGGGCGCGGC---ATTTGTTTCGGCAGAAGA 386
BSNT_02323___ 387 AACACTCAATCAATTTCGCCTGATTAAAGATGACAATGAGATTCGTTTGC 436
|||.|||||.|||||.||.||..|.||||||||.||.||.||..|..|.|
RBAM_013630__ 387 AACGCTCAACCAATTCCGTCTCGTGAAAGATGAGAAGGAAATCAGCATTC 436
BSNT_02323___ 437 TGAAAGAGGCGGCAAAGCTTGCGGATTACGGTGTTGAAGTCGG---CACA 483
|.|..||.||||||||.||.|||||||||||.||||||||||| |.|
RBAM_013630__ 437 TCAGGGAAGCGGCAAAACTCGCGGATTACGGAGTTGAAGTCGGTGTCGC- 485
BSNT_02323___ 484 GCCGCTTTGCGTGAA----GGCATCAGTGAAGTGGAAGTGCTCGCTCAAA 529
|.||||| || ||..|.||||||...|||||.|||||.||.|
RBAM_013630__ 486 GGCGCTT------AAAGAGGGTGTGAGTGAAACCGAAGTACTCGCGCAGA 529
BSNT_02323___ 530 TTGAGTATGAGCTGAAGAAAAAAGGAATTCAGGGCATGTCTTTCTCTACA 579
||||||.||||||||||||||||||..|.|||||||||||.||.||.||.
RBAM_013630__ 530 TTGAGTTTGAGCTGAAGAAAAAAGGTGTGCAGGGCATGTCATTTTCAACG 579
BSNT_02323___ 580 ATGGTTTTATTCGGAGAAAAATCTGGCCAGCCTCATGGAAATCCTGGTAC 629
|||||..|.|||||.||||||||.||||||||.|||||.|||||.|||.|
RBAM_013630__ 580 ATGGTGCTGTTCGGGGAAAAATCAGGCCAGCCCCATGGGAATCCGGGTGC 629
BSNT_02323___ 630 AGCCACGTTGAAAAAAGGTGATTTTGTTTTATTTGATCTCGGTGTTATTC 679
||.|..||||||||||||.|||||.|||.|.||||||||.||.|||||||
RBAM_013630__ 630 AGACCGGTTGAAAAAAGGCGATTTCGTTCTGTTTGATCTGGGCGTTATTC 679
BSNT_02323___ 680 TTGATGGCTATTGCTCTGATATTACAAGAACGTTTGCATACAAAACCATC 729
||||.|||||.||.||.||.|||||.|||||.||.||||||.||.|.|||
RBAM_013630__ 680 TTGACGGCTACTGTTCAGACATTACGAGAACATTCGCATACCAATCAATC 729
BSNT_02323___ 730 AATCCGAAGCAGGAGGCCATTTACGAGACTGTGCTTCAAGCGGAAAAAGC 779
|..|||||.|||||.|..||||||||.||.||||||.||||||||.|.||
RBAM_013630__ 730 AGCCCGAAACAGGAAGAGATTTACGAAACGGTGCTTAAAGCGGAACAGGC 779
BSNT_02323___ 780 CGCGATTGAGGCAAGCAAACCCGGTGTGAGAATCGGAGATCTGGATTTAA 829
.|||.||.|...|||||||||.||.||.||||||||.|||||.|||||||
RBAM_013630__ 780 GGCGCTTCAATTAAGCAAACCAGGCGTCAGAATCGGCGATCTCGATTTAA 829
BSNT_02323___ 830 CTGCCCGCGGAATCATTGAAAAAGCGGGATACGGTGACTATTTTCCTCAC 879
..||||||||.||.|||||||||||.||||||||.||||||||.||.|||
RBAM_013630__ 830 AAGCCCGCGGCATTATTGAAAAAGCCGGATACGGAGACTATTTCCCGCAC 879
BSNT_02323___ 880 CGGCTTGGGCATGGACTCGGAATTTCTGTCCATGAGTATCCATCCATGAG 929
||.||.||.||.||||||||.|||||.||.||.||.||.|||||.|||||
RBAM_013630__ 880 CGCCTCGGCCACGGACTCGGGATTTCGGTTCACGAATACCCATCAATGAG 929
BSNT_02323___ 930 CCAG-GCCAACGATACACTGCTGCAGGAAGGCATGGTCTACACGATCGAA 978
||| ||.|||||.|||||.||..|.||||||||||||||||||||.|||
RBAM_013630__ 930 -CAGCGCGAACGACACACTCCTCAAAGAAGGCATGGTCTACACGATAGAA 978
BSNT_02323___ 979 CCGGGGATATATGTGCCTGAGATCGGCGGCGTGCGCATTGAGGATGACGT 1028
||||||||.||.|||||.||..|||||||||||||||||||.||.||.||
RBAM_013630__ 979 CCGGGGATTTACGTGCCGGATGTCGGCGGCGTGCGCATTGAAGACGATGT 1028
BSNT_02323___ 1029 TCACGTAACAAAGGAAGGAGCAGTTGCTCTGACCCAATATCCAAAGGAAT 1078
...|||.|||||.||.||.||.|..||..|.||.||.|||||.||.||||
RBAM_013630__ 1029 GTTCGTCACAAAAGACGGCGCCGAAGCATTAACGCAGTATCCGAAAGAAT 1078
BSNT_02323___ 1079 TAATCATACTGCCGTAA---- 1095
|||..||.||| ||
RBAM_013630__ 1079 TAACGATTCTG----AAATAG 1095
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