Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02311 and RBAM_013570

See Amino acid alignment / Visit BSNT_02311 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:00
# Commandline: needle
#    -asequence dna-align/BSNT_02311.1.9828.seq
#    -bsequence dna-align/RBAM_013570.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02311-RBAM_013570.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02311-RBAM_013570.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02311
# 2: RBAM_013570
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 186
# Identity:     163/186 (87.6%)
# Similarity:   163/186 (87.6%)
# Gaps:           0/186 ( 0.0%)
# Score: 723.0
# 
#
#=======================================

BSNT_02311         1 GTGAAAATCGCTAAGGTTGGGAATGTCATTGAATTTAAAAACGGATTAAC     50
                     ||||||||.|||||||||||.||.||||||||||||||||||||||||||
RBAM_013570        1 GTGAAAATTGCTAAGGTTGGAAACGTCATTGAATTTAAAAACGGATTAAC     50

BSNT_02311        51 CGGTGTTGTTGAAAAAGTAAATGAGAATTCTGTTATCGTTGATGTGACGA    100
                     ||||.|||||||||||||||||||.||.||.||.|||||||||||.||.|
RBAM_013570       51 CGGTATTGTTGAAAAAGTAAATGAAAACTCCGTCATCGTTGATGTAACCA    100

BSNT_02311       101 TCATGGATAACTATCGGGATCTTGAGTTAGATTCATTGACAGTTGTTAAT    150
                     ||||||||||.|||||.||.|||||.||||||||..|.||.||.||.||.
RBAM_013570      101 TCATGGATAATTATCGTGACCTTGAATTAGATTCCCTCACTGTCGTCAAC    150

BSNT_02311       151 CATAAAAATTATAAGATCATCAGAGACTCCTATTAA    186
                     |||||.||||||||.|||||||||||||||||||||
RBAM_013570      151 CATAAGAATTATAAAATCATCAGAGACTCCTATTAA    186


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.