Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02301 and RBAM_013460
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence dna-align/BSNT_02301.1.9828.seq
# -bsequence dna-align/RBAM_013460___clpE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02301-RBAM_013460___clpE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02301-RBAM_013460___clpE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02301
# 2: RBAM_013460___clpE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2120
# Identity: 1439/2120 (67.9%)
# Similarity: 1439/2120 (67.9%)
# Gaps: 349/2120 (16.5%)
# Score: 5692.0
#
#
#=======================================
BSNT_02301 0 -------------------------------------------------- 0
RBAM_013460__ 1 ATGCGTTGTCAACATTGTCAGAAAAACGAGGCGACGATTCGCCTGAACAT 50
BSNT_02301 0 -------------------------------------------------- 0
RBAM_013460__ 51 GCAAGTCAATTCCATTCAAAAACAATTCGTTTTATGTGAAACATGTTATA 100
BSNT_02301 0 -------------------------------------------------- 0
RBAM_013460__ 101 CAGAATTAACCCGAAAACCGGCTATGAGCATGGGGCCGCAATCATTCGGA 150
BSNT_02301 0 -------------------------------------------------- 0
RBAM_013460__ 151 TTCCCGTTTGAGCAAGGTTTCGCTCCCAATCAAAATAAACAGCAGGCCGG 200
BSNT_02301 0 -------------------------------------------------- 0
RBAM_013460__ 201 CCCTGAAAAAGGCCTGCTCGACGAGCTCGCTCAAAACGTCACAAACGGCG 250
BSNT_02301 0 -------------------------------------------------- 0
RBAM_013460__ 251 CAAAAGCAGGTCTGATTGACCCTGTGATCGGCCGCGATCATGAAGTGGCG 300
BSNT_02301 1 ---GTGATCGAAATTCTAAACCGCCGGAACAAAAACAATCCGGTTCTTAT 47
||.||.||||||.|.|||||||||||.||||||||||||||.||.||
RBAM_013460__ 301 CGCGTAATTGAAATTTTGAACCGCCGGAATAAAAACAATCCGGTGCTGAT 350
BSNT_02301 48 TGGTGAGCCGGGTGTAGGGAAAACTGCCATCGCTGAAGGGCTCGCTTTAA 97
.|||||||||||.||.||.|||||.||.||.||.|||||.|||||..|.|
RBAM_013460__ 351 CGGTGAGCCGGGCGTCGGTAAAACGGCTATTGCAGAAGGCCTCGCGCTTA 400
BSNT_02301 98 AAATTGCTGAAGGTGATGTTCCAAACAAACTGAAAAACAAAGAGCTATAT 147
||||.||||||||.|||||.||.||||||.||||||||||||||||.||.
RBAM_013460__ 401 AAATCGCTGAAGGCGATGTGCCGAACAAATTGAAAAACAAAGAGCTTTAC 450
BSNT_02301 148 TTGCTTGATGTTGCATCCCTTGTTGCAAACACAGGGATCAGAGGCCAATT 197
.|||||||.||.||.||.||.||.||.||.|||||||||||||||||.||
RBAM_013460__ 451 CTGCTTGACGTCGCTTCTCTCGTCGCCAATACAGGGATCAGAGGCCAGTT 500
BSNT_02301 198 TGAGGAGAGAATGAAACAGCTGATCACTGAGC----TGAAGGAACGAAAA 243
|||.||.||||||||||| ||.|.|||.| |.||.|||||.|||
RBAM_013460__ 501 TGAAGAAAGAATGAAACA----ATTAATGAACGAATTAAAAGAACGGAAA 546
BSNT_02301 244 AATGTCATTCTGTTCATTGATGAAATTCACCTTCTCGTCGGCGCAGGCTC 293
||.|||||..||||||||||.||.|||||||||||.||.|||||.|||||
RBAM_013460__ 547 AACGTCATCTTGTTCATTGACGAGATTCACCTTCTTGTAGGCGCCGGCTC 596
BSNT_02301 294 TGCAGAAGGATCAATGGACGCCGGCAACATTCTCAAACCGGCCCTAGCCA 343
|||.||.|||||||||||.|||||.|||||.||.||||||||.||.||||
RBAM_013460__ 597 TGCCGAGGGATCAATGGATGCCGGGAACATCCTGAAACCGGCGCTTGCCA 646
BSNT_02301 344 GAGGCGAACTGCAAGTCATTGGTGCGACAACACTGAAAGAATATCGTCAA 393
|||||||.|||||.|||||.||.||||||||.||||||||.||.||.||.
RBAM_013460__ 647 GAGGCGAGCTGCAGGTCATCGGGGCGACAACGCTGAAAGAGTACCGCCAG 696
BSNT_02301 394 ATCGAAAAAGATGCCGCGCTGGAAAGACGTTTTCAGCCTGTCATGGTGCA 443
||.|||||||||||.|||||.||||||||.||.||||||||||||||.||
RBAM_013460__ 697 ATTGAAAAAGATGCGGCGCTTGAAAGACGCTTCCAGCCTGTCATGGTTCA 746
BSNT_02301 444 GGAGCCTTCAATTGAACAGGCTATCCTCATTCTGCAAGGGATTAAAGACA 493
.||||||.||||.|||||.||.|||..|||||||.||||.||||||||.|
RBAM_013460__ 747 CGAGCCTACAATAGAACAAGCCATCAGCATTCTGGAAGGCATTAAAGATA 796
BSNT_02301 494 AATACGAGGCATACCATGGCGTAACATTCAGTGATGAAGCAATCAAAGCA 543
||||.|||..||||||.|||||.||||||||..|||||||.||.||.||.
RBAM_013460__ 797 AATATGAGAAATACCACGGCGTCACATTCAGCAATGAAGCGATAAATGCC 846
BSNT_02301 544 TGTGTCACTTTATCATCCCGCTACATTCAGGACAGACACCTGCCGGATAA 593
|||||.||..|.||||||||.||||||||||||.|.||||||||||||||
RBAM_013460__ 847 TGTGTTACGCTTTCATCCCGTTACATTCAGGACCGCCACCTGCCGGATAA 896
BSNT_02301 594 AGCAATTGATTTATTAGATGAAGCAGGTTCAAAAGCCAACCTGTTAATTG 643
|||.||.||.||||||||||||||.||.||.||.||.||||||....|||
RBAM_013460__ 897 AGCGATCGACTTATTAGATGAAGCCGGCTCTAAGGCGAACCTGGAGCTTG 946
BSNT_02301 644 ATGAAC--TGAATGATGAGGATGCCGCTGA-ACGCTTAACTGCAATTGAA 690
|| || |.|||||.||.|||||.||||| |..||.|| .||||||||.
RBAM_013460__ 947 AT--ACCGTAAATGAAGAAGATGCGGCTGAGAGACTCAA-AGCAATTGAC 993
BSNT_02301 691 GCCGAAAAAACAAAAGCCCTGGAAGAAGAAAATTACGAACTTGCGGCAAA 740
||.||.|||||||||||.||..|.|||||||||||.||.|||||.||.||
RBAM_013460__ 994 GCGGAGAAAACAAAAGCGCTTCATGAAGAAAATTATGAGCTTGCCGCGAA 1043
BSNT_02301 741 ACTCCGTGATGAAGAACTCGCATTGGAGAAAAAACTGAACAGCTCCTCCG 790
|||.||||||||||||...||.|||||.||..|.||| |
RBAM_013460__ 1044 ACTGCGTGATGAAGAAGCGGCGTTGGAAAAGCAGCTG------------G 1081
BSNT_02301 791 CTCAT-----ACCG----CTGTCACTGTGGAA-----GCTGAGCACATTC 826
|.||| |||| || |||| .||.|| ||.|||||.||||
RBAM_013460__ 1082 CGCATGAAACACCGGCCTCT-TCAC-CTGAAATCGGGGCGGAGCATATTC 1129
BSNT_02301 827 AGGAAATTGTTGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAGGCA 876
|.|..||..|||||||.|||||||||||.||.|||||.|||||.|||||.
RBAM_013460__ 1130 AAGCCATCATTGAACAGAAAACAGGCATTCCGGTCGGAAAACTCCAGGCT 1179
BSNT_02301 877 GACGAACAAACGAAAATGAAAGAACTCGAAGCAAAACTTCATGAACGCGT 926
||.||||||...||||||||.|||||.||||...|.||||||.|.|||||
RBAM_013460__ 1180 GATGAACAAGTCAAAATGAAGGAACTTGAAGAGCATCTTCATCAGCGCGT 1229
BSNT_02301 927 GATTGGACAAGAAGCCGCTGTTCAAAAAGTGGCAAAGGCGGTAAGACGAA 976
.||.||.||.|||...||.||..||||||||||.||.|||||.|||||||
RBAM_013460__ 1230 CATCGGTCAGGAAAAAGCCGTGAAAAAAGTGGCGAAAGCGGTCAGACGAA 1279
BSNT_02301 977 GCCGCGCCGGTTTAAAATCCAAAAACAGACCAGTCGGCTCCTTCCTCTTC 1026
||||||||||.||||||||||||||||||||.|||||||||||||||||.
RBAM_013460__ 1280 GCCGCGCCGGCTTAAAATCCAAAAACAGACCTGTCGGCTCCTTCCTCTTT 1329
BSNT_02301 1027 GTCGGTCCTACCGGCGTAGGGAAAACAGAGCTTTCTAAAACACTGGCAGA 1076
|||||.||.|||||.||.||.|||||.|||.|.||.||.|||||.|||||
RBAM_013460__ 1330 GTCGGACCGACCGGAGTCGGAAAAACCGAGTTATCAAAGACACTCGCAGA 1379
BSNT_02301 1077 TGAATTATTCGGCACAAAAGACGCTATTATCCGACTCGATATGAGCGAAT 1126
||||.|.|||||.||||||||..|.||||||||.|||||||||||.||||
RBAM_013460__ 1380 TGAACTGTTCGGTACAAAAGATTCCATTATCCGTCTCGATATGAGTGAAT 1429
BSNT_02301 1127 ACATGGAGAAACACGCCGTATCTAAAATTATCGGTTCACCGCCTGGATAT 1176
|||||||.||||||||||||||.|||||.||||||||||||||.||||||
RBAM_013460__ 1430 ACATGGAAAAACACGCCGTATCAAAAATCATCGGTTCACCGCCGGGATAT 1479
BSNT_02301 1177 GTCGGCCATGAGGAAGCTGGACAATTAACTGAGAAAGTGCGCCGCAATCC 1226
|||||.||.||.|||||.||.||||||||.||.|||||||||||||||||
RBAM_013460__ 1480 GTCGGACACGATGAAGCCGGTCAATTAACGGAAAAAGTGCGCCGCAATCC 1529
BSNT_02301 1227 TTACAGCATTGTGTTGCTGGATGAGATTGAAAAAGCACACCCAGACGTTC 1276
.||||||||.|||.||||.|||||||||||||||||.|||||.||.||.|
RBAM_013460__ 1530 GTACAGCATCGTGCTGCTCGATGAGATTGAAAAAGCCCACCCTGATGTCC 1579
BSNT_02301 1277 AGCATATGTTCCTGCAAATTATGGAGGATGGCCGTCTGACAGACAGCCAA 1326
||||||||||.|||||.|||||||||||.||||||||||||||||||||.
RBAM_013460__ 1580 AGCATATGTTTCTGCAGATTATGGAGGACGGCCGTCTGACAGACAGCCAG 1629
BSNT_02301 1327 GGCAGAACTGTAAGCTTCAAAGACACAGTGATCATCATGACAAGTAATGC 1376
||||||||.||.|||||||||||.||.||..|.||.||||||||.||.||
RBAM_013460__ 1630 GGCAGAACGGTCAGCTTCAAAGATACCGTTTTGATTATGACAAGCAACGC 1679
BSNT_02301 1377 GGGTGCTGGTGAGAAACAAACGAAAGTCGGTTTCCAATCAGATGACAGTG 1426
.||..|.||.||.|||||...|||||||||.||||||||.||.||.||.|
RBAM_013460__ 1680 TGGAACCGGCGAAAAACAGGTGAAAGTCGGATTCCAATCTGAAGAGAGCG 1729
BSNT_02301 1427 TCATCGAAGAACAAACATTGATTGATTCACTGAGCATGTTCTTTAAACCT 1476
||.|.|||||||||||..|||||||||||||||||..||||||.|||||.
RBAM_013460__ 1730 TCCTGGAAGAACAAACGCTGATTGATTCACTGAGCGCGTTCTTCAAACCG 1779
BSNT_02301 1477 GAGTTCCTCAACCGTTTTGACAGCATTATTGAGTTCCGCTCATTGGAAAA 1526
|||||..|.|||||.|||||||||||.|||||.||||..||..||.||||
RBAM_013460__ 1780 GAGTTTTTAAACCGGTTTGACAGCATCATTGAATTCCAATCCCTGAAAAA 1829
BSNT_02301 1527 AGAACATCTTGTCAAAATCGTCAGCCTTCTTCTTGGAGAACTTGAAGAAA 1576
|||||||||.||.||||||||||||||.|||||...|||.||||||||.|
RBAM_013460__ 1830 AGAACATCTCGTGAAAATCGTCAGCCTGCTTCTCACAGAGCTTGAAGACA 1879
BSNT_02301 1577 CATTGGCTGAACGGGGCATTAGCTTGAATGTGACAGATGAAGCGAAAGAA 1626
||||....||.||.|||||.|||.|||..||.||.||.||||||||||||
RBAM_013460__ 1880 CATTAAAAGAGCGCGGCATCAGCCTGAGCGTAACGGACGAAGCGAAAGAA 1929
BSNT_02301 1627 AAAATCGCTGAGCTGGGCTACCACCCTTCATTCGGTGCACGTCCGCTTAG 1676
|||||||||||..|.|||||||||||..|.|||||.|||||.|||||.||
RBAM_013460__ 1930 AAAATCGCTGAAATCGGCTACCACCCAGCTTTCGGAGCACGCCCGCTCAG 1979
BSNT_02301 1677 AAGAACCATCCAAGAATGGGTTGAGGATGAAATGACCGATCTGCTGCTT- 1725
|||||||||||||||||.|.|.|||||.||||||||.||||| ||..||
RBAM_013460__ 1980 AAGAACCATCCAAGAATTGATCGAGGACGAAATGACAGATCT-CTTATTG 2028
BSNT_02301 1726 GATAATGGCGAGATCACAAG-TTTTCACGTGATTTTAGAAGATGATAAAA 1774
|||||...|||.|| |.||| .||.||.||..|..|.|||||.||....|
RBAM_013460__ 2029 GATAACAACGAAAT-AAAAGCCTTCCATGTCGTAATGGAAGAGGACGGCA 2077
BSNT_02301 1775 TCAAAGTGCAAGCGAAATAA 1794
|||||||.|..||..|||||
RBAM_013460__ 2078 TCAAAGTCCGGGCACAATAA 2097
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