Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02298 and RBAM_013440

See Amino acid alignment / Visit BSNT_02298 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:59
# Commandline: needle
#    -asequence dna-align/BSNT_02298___motB.1.9828.seq
#    -bsequence dna-align/RBAM_013440___motB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02298___motB-RBAM_013440___motB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02298___motB-RBAM_013440___motB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02298___motB
# 2: RBAM_013440___motB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 803
# Identity:     601/803 (74.8%)
# Similarity:   601/803 (74.8%)
# Gaps:          37/803 ( 4.6%)
# Score: 2204.5
# 
#
#=======================================

BSNT_02298___      1 ATGGCGAGAAAA---AAGAAGAAGCATGAGGACGAGCAAGTTGATGAATC     47
                     ||||||||||||   ||||||||||||||.||||||||.||.|||||.||
RBAM_013440__      1 ATGGCGAGAAAAAAGAAGAAGAAGCATGATGACGAGCATGTGGATGAGTC     50

BSNT_02298___     48 ATGGCTCGTTCCTTACGCCGACATCCTTACTCTTCTCCTGGCATTGTTTA     97
                     .|||||..|.||.|||||.||..|.||.||.|||||..||||..||||.|
RBAM_013440__     51 TTGGCTGATCCCGTACGCGGATTTGCTCACCCTTCTTTTGGCTCTGTTCA    100

BSNT_02298___     98 TTGTGCTGTACGCGAGCAGCTCGATTGACGCAGCTAAGTTTCAAATGCTC    147
                     ||||..|||.|||.|..||||||.|.||.||.||.||.||.||||||||.
RBAM_013440__    101 TTGTATTGTTCGCCATGAGCTCGGTCGATGCGGCGAAATTCCAAATGCTG    150

BSNT_02298___    148 TCAAAATCATTTAATGAAGTTTTTACAGGCGGCACCGGTGTACTGGACTA    197
                     ||.|||||||||||.|..||.|||||.||.|||||.|||||.||.||.||
RBAM_013440__    151 TCTAAATCATTTAACGCCGTGTTTACCGGAGGCACGGGTGTTCTTGAATA    200

BSNT_02298___    198 CTCCAGTGTCACTCCTCCTGAAAACGAGTCAGACGGCATCGATGAAGTGA    247
                     .||.||.|||||.||||||||||||||...|||||||.|.||| .|||.|
RBAM_013440__    201 TTCGAGCGTCACCCCTCCTGAAAACGAAAAAGACGGCGTTGAT-CAGTTA    249

BSNT_02298___    248 AA-------AAGGAAAAAGA-AGAGAAAGAGAAAAACAAGAAAGAAAAAG    289
                     ||       ||||||||||| |.|| ||.|||||   ||||||||||.||
RBAM_013440__    250 AAAAAAGACAAGGAAAAAGATAAAG-AACAGAAA---AAGAAAGAAAGAG    295

BSNT_02298___    290 AAAAAGCAGCTGATCAAGAAGAACTTGAAAATGTG-AAGAGCCAGGTGGA    338
                        |||||||.||||..||||||||||||...||| ||.|||.||.|   
RBAM_013440__    296 ---AAGCAGCCGATCGCGAAGAACTTGAAGGCGTGCAAAAGCAAGTT---    339

BSNT_02298___    339 AA--AGTTCATCAAAGATAAAAAGCTGGAACATCAGCTGGAGACGAAGAT    386
                     ||  |.||.||.|||.||||||||||.|||..|||||||||.||.|||.|
RBAM_013440__    340 AATCAATTTATAAAAAATAAAAAGCTTGAAACTCAGCTGGAAACAAAGCT    389

BSNT_02298___    387 GACTAGTGAAGGCCTTCTGATTACGATTAAAGACAGCATCTTCTTTGATT    436
                     |||||..|||||.||..|.|||||.|||||||||||.|||||.|||||||
RBAM_013440__    390 GACTAAAGAAGGACTCTTAATTACCATTAAAGACAGTATCTTTTTTGATT    439

BSNT_02298___    437 CTGGAAAAGCGACCATCCGTAAGGAAGATGTGCCGCTTGCAAAAGAGATT    486
                     |.|||...|||...||||||.||||||||.|.||||||||.||.||.||.
RBAM_013440__    440 CCGGACGGGCGGATATCCGTCAGGAAGATATTCCGCTTGCCAAGGAAATC    489

BSNT_02298___    487 TCAAATCTTCTTGTGATTAACCCGCCAAGAAATATCATTATCAGCGGACA    536
                     ||.|||||.||||||.|.||.||||||||.||.||.||.|||||||||||
RBAM_013440__    490 TCGAATCTCCTTGTGCTGAATCCGCCAAGGAACATTATCATCAGCGGACA    539

BSNT_02298___    537 TACTGATAATATGCCAATTAAAAATTCTGAATTCCAATCAAACTGGCATT    586
                     |||.||.|||.|.||.||||||||.||..|||..|||||.||||||||||
RBAM_013440__    540 TACGGACAATGTACCGATTAAAAACTCACAATATCAATCTAACTGGCATT    589

BSNT_02298___    587 TAAGCGTCATGAGAGCGGTAAACTTTATGGGGCTCCTGATTGAAAACCCC    636
                     |||||||||||.|.||.||.|||||.||||...|.||||..||||||||.
RBAM_013440__    590 TAAGCGTCATGCGGGCCGTCAACTTCATGGCTATTCTGACGGAAAACCCG    639

BSNT_02298___    637 AAGCTCGATGCAAAAGTGTTCAGCGCCAAGGGTTATGGCGAGTATAAACC    686
                     ||.||.||.||||||||.|||||||||||.||||..||.|||||||||||
RBAM_013440__    640 AAACTTGACGCAAAAGTATTCAGCGCCAAAGGTTTCGGAGAGTATAAACC    689

BSNT_02298___    687 GGTGGCTTCCAACAAAACTGCGGAAGGCCGAAGCAAAAACCGGCGGGTTG    736
                     ||..|..||.||||||||.||.|||||.||.|||||||||.||||.||.|
RBAM_013440__    690 GGCCGTGTCGAACAAAACCGCTGAAGGGCGCAGCAAAAACAGGCGCGTCG    739

BSNT_02298___    737 AAGTTCTCATTTTGCCGAGAGGCGCAGCGGAAACAAATGA--AAAAT-AG    783
                     |.||..|.||...|||.|||..|||.|||      |.|||  ||||| ||
RBAM_013440__    740 AGGTATTGATACAGCCTAGAAACGCCGCG------ACTGACCAAAATCAG    783

BSNT_02298___    783 ---    783
                        
RBAM_013440__    784 TAA    786


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02298 and RBAM_013440

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
