Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02287 and RBAM_013370
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:58
# Commandline: needle
# -asequence dna-align/BSNT_02287___mtnW.1.9828.seq
# -bsequence dna-align/RBAM_013370___mtnW.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02287___mtnW-RBAM_013370___mtnW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02287___mtnW-RBAM_013370___mtnW.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02287___mtnW
# 2: RBAM_013370___mtnW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1267
# Identity: 958/1267 (75.6%)
# Similarity: 958/1267 (75.6%)
# Gaps: 47/1267 ( 3.7%)
# Score: 3538.5
#
#
#=======================================
BSNT_02287___ 1 AT---GGATGAAAATGAAAGGAGCTCTGGCATGAGTGAGTTATTAGCGAC 47
| |.|.|||| ||.|||.|.||..|||||||.||..||||.||.||
RBAM_013370__ 1 -TTGCGAAAGAAA--GAGAGGCGTTCACGCATGAGCGAAGTATTGGCAAC 47
BSNT_02287___ 48 ATATCTCCTGACCGA---ACCGGGAGCCGATACAGAGAAGAAA----GCA 90
||||||.|||||.|| |.||| ||||.|| ||| ||.
RBAM_013370__ 48 ATATCTTCTGACAGACACAACGG--------ACAGTGA--AAAGCGGGCG 87
BSNT_02287___ 91 GAACAAATCGCAACAGGATTGACAGTAGGCTCCTGGACTGATCTGCCCCT 140
|||||.||.||..|.||..||||.|||||||||||||||||.||||||||
RBAM_013370__ 88 GAACAGATTGCGGCGGGGCTGACGGTAGGCTCCTGGACTGACCTGCCCCT 137
BSNT_02287___ 141 TGTAAAACAGGAGCAAATGCA-AAAGCACAAGGGGCGGGTGATAAAAGTT 189
.||.||.|||||.||..| || |||.||.||.||||||||..||||||||
RBAM_013370__ 138 GGTGAAGCAGGAACAGCT-CAGAAAACATAAAGGGCGGGTCGTAAAAGTT 186
BSNT_02287___ 190 GAGGAGAGAGAGGGAACTGCTGCATCAGAAAA------ACAAGCGGTCAT 233
|||||||.|||.|||| |.|||||||| ||||.|.|||||
RBAM_013370__ 187 GAGGAGAAAGAAGGAA------CCTCAGAAAACGAAACACAATCCGTCAT 230
BSNT_02287___ 234 CACAATTGCCTATCCTGAAATCAATTTCTCTCAG-GATATTCCGGCTTTG 282
|||.||.||||||||.|||.|.||.||.|| .|| |||||||||||..|.
RBAM_013370__ 231 CACCATCGCCTATCCCGAAGTGAACTTTTC-AAGAGATATTCCGGCCGTC 279
BSNT_02287___ 283 CTGACAACAGTGTTTGGCAAGCTGTCCCTGGACGGAAAAATCAAATTAAT 332
|||||.||.||.||.||.||||||||.||||||||||||||.|||||.|.
RBAM_013370__ 280 CTGACGACGGTATTCGGAAAGCTGTCACTGGACGGAAAAATAAAATTGAC 329
BSNT_02287___ 333 CGATCTTCACTTCTCTGAAGTATTTAAGCGTGCACTGCCGGGACCGAAGT 382
.||||||.|.||.||.||||..|||||.|||.|.||.||.||.|||||.|
RBAM_013370__ 330 TGATCTTGAATTTTCCGAAGGGTTTAAACGTTCCCTTCCCGGGCCGAAAT 379
BSNT_02287___ 383 TTGGCGTATACGGCATCCGGAAGCTGCTGGGAGAGTTTGAGAGACCGCTG 432
|.||..|||||||||||||.||.||||||||.||.|||||.||||||||.
RBAM_013370__ 380 TCGGTATATACGGCATCCGCAAACTGCTGGGCGAATTTGAAAGACCGCTT 429
BSNT_02287___ 433 TTAATGAGCATATTTAAAGGCGTAATCGGAAGGGACCTGAGTGATATTAA 482
.|.||||||||||||||||||||.||||||.||||.||....||.|||||
RBAM_013370__ 430 CTGATGAGCATATTTAAAGGCGTGATCGGACGGGATCTTGCCGACATTAA 479
BSNT_02287___ 483 AGAACAGCTCCGGCAGCAGGCGCTTGGCGGAGTTGA-CTTGATTAAAGAC 531
||||||||||.|.|||||||||||.|||||.||.|| ||| ||||||||.
RBAM_013370__ 480 AGAACAGCTCAGACAGCAGGCGCTCGGCGGCGTGGATCTT-ATTAAAGAT 528
BSNT_02287___ 532 GATGAAATTTTCTTTGAGACTGGTCTAGCGCCTTTTGAAACAAGAATTGC 581
||.||||||||||||||.|.||..||.||.||.||||||||..|.|||..
RBAM_013370__ 529 GACGAAATTTTCTTTGAAAATGAACTGGCTCCGTTTGAAACCCGCATTAT 578
BSNT_02287___ 582 AGAAGGAAAGCAAATATTGAAAGAAACGTATGAACAAACCGGACATAAAA 631
.||||||||.|||.|..||||.|||||....||..||||.||.|||||||
RBAM_013370__ 579 CGAAGGAAAACAAGTCCTGAAGGAAACCCGGGAGGAAACGGGGCATAAAA 628
BSNT_02287___ 632 CGCTGTATGCGGTGAATTTGACCGGACGTACGGCTGATCTGAAAGACAAA 681
||||||||||.||.||..|.||.|||.|.||.|||||..||...||.|||
RBAM_013370__ 629 CGCTGTATGCCGTAAACCTTACGGGAAGGACCGCTGAATTGCGGGATAAA 678
BSNT_02287___ 682 GCGAGACGCGCCGCCGAGTTGGGAGCGGATGCGCTTTTGTTTAATGTCTT 731
|||||.|||||.||.||..|.||.|||||.||||||||.||.|||||.||
RBAM_013370__ 679 GCGAGGCGCGCGGCAGAACTCGGGGCGGACGCGCTTTTATTGAATGTGTT 728
BSNT_02287___ 732 CGCTTACGGCTTGGACGTTATGCAAGGCCTTGCGGAAGATCCTGAAATCC 781
|||||||||.||.||.||.|||||..|||||||.||.|||...|||||||
RBAM_013370__ 729 CGCTTACGGTTTAGATGTGATGCAGAGCCTTGCTGAGGATAAGGAAATCC 778
BSNT_02287___ 782 CAGTTCCGATTATGGCGCATCCAGCAGTGAGCGGAGCGTTTACGTCTTCT 831
|..|||||||.|||||||||||.|||||.|||||.|||||.||.||.|||
RBAM_013370__ 779 CGCTTCCGATCATGGCGCATCCGGCAGTCAGCGGCGCGTTCACATCATCT 828
BSNT_02287___ 832 CCGTTTTACGGTTTTTCTCACGCTCTTTTACTCGGAAAATTAAACCGATA 881
||..|||||||.||.||.||.||.|||||.|||||.||..|.|||||.||
RBAM_013370__ 829 CCCGTTTACGGCTTGTCGCATGCGCTTTTGCTCGGCAAGCTGAACCGCTA 878
BSNT_02287___ 882 TTGCGGTGCTGACTTCAGCCTCTTTCCGTCTCCATATGGTTCGGTTGCGC 931
||||||.|||||.|||||..|.||||||||.||.||.||.||.|||||.|
RBAM_013370__ 879 TTGCGGCGCTGATTTCAGTTTATTTCCGTCACCTTACGGATCCGTTGCTC 928
BSNT_02287___ 932 TTCCAAGAGCAGAT--GCACTGGCGATTCATGAAGAATGTGTGAGAGAGG 979
||||.| ||.|| | ||.||.||.||.|||||.||||||||.|.|||.|
RBAM_013370__ 929 TTCCGA-AGGAG-TCCGCGCTTGCAATCCATGATGAATGTGTAAAAGACG 976
BSNT_02287___ 980 ATG-CTTTTAACCAAACATTTGCTGTTCCGTCAGCAGGCATTCATCCCGG 1028
||| ||||.|.|| ..|.|||||.||.|||||||||||||||||.|||||
RBAM_013370__ 977 ATGTCTTTCATCC-GTCGTTTGCCGTCCCGTCAGCAGGCATTCACCCCGG 1025
BSNT_02287___ 1029 CATGGTTCCGCTATTAATGCGTGATTTCGGCATAGACCACATTATTAACG 1078
.|||||.||..|.||.|||||.|||||||||||.||.|||||.||.||.|
RBAM_013370__ 1026 TATGGTGCCATTGTTGATGCGCGATTTCGGCATCGATCACATCATCAATG 1075
BSNT_02287___ 1079 CCGGAGGAGGCGTACATGGACATCCGAACGGTGCCCAAGGCGGGGGGCGA 1128
||||.||||||.|.||.||.||||||||.||.|.|.|.||||||||...|
RBAM_013370__ 1076 CCGGCGGAGGCATTCACGGCCATCCGAAAGGAGGCGAGGGCGGGGGAAAA 1125
BSNT_02287___ 1129 GCGTTCAGAGCCATTATTGATGCGGTCCTAGAGGCCCAGCCGATTGATGA 1178
||||||.|.|||||.|||||||||||.||.||.||.|||||||||||.||
RBAM_013370__ 1126 GCGTTCCGCGCCATCATTGATGCGGTGCTTGAAGCGCAGCCGATTGAAGA 1175
BSNT_02287___ 1179 AAAAGCCGAACAATGCAAGGATCTTAAGCTTGCGCTAGATAAATGGGGAA 1228
||||||||.....|||||.||||||.||||.||..||||.||||||||||
RBAM_013370__ 1176 AAAAGCCGCGTCGTGCAAAGATCTTCAGCTCGCATTAGACAAATGGGGAA 1225
BSNT_02287___ 1229 AGGTTGAAGCCGTATGA 1245
.|||.||||||||||||
RBAM_013370__ 1226 GGGTGGAAGCCGTATGA 1242
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