Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02277 and RBAM_013310
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:58
# Commandline: needle
# -asequence dna-align/BSNT_02277___kinE.1.9828.seq
# -bsequence dna-align/RBAM_013310___kinE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02277___kinE-RBAM_013310___kinE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02277___kinE-RBAM_013310___kinE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02277___kinE
# 2: RBAM_013310___kinE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2252
# Identity: 1674/2252 (74.3%)
# Similarity: 1674/2252 (74.3%)
# Gaps: 67/2252 ( 3.0%)
# Score: 6036.0
#
#
#=======================================
BSNT_02277___ 1 ATG---GAAACTCTTGGTGTCCAGACAAACTCGGAGCTGCGAGAGGAACT 47
||| ||||||||.|.|.|.||.|||||...|..||||..||||.|.||
RBAM_013310__ 1 ATGGCTGAAACTCTGGATTTGCAAACAAAAGAGTCGCTGAAAGAGCAGCT 50
BSNT_02277___ 48 GAATCGCCTCAAAGAAGAAAACGCGCGACTGAAAAAGGAATTGAATCAGC 97
|||.||..|.|||||.|||||.|..||.|||||.|..||.|||||.|.|.
RBAM_013310__ 51 GAAGCGAATGAAAGAGGAAAATGACCGCCTGAAGAGTGATTTGAACCGGT 100
BSNT_02277___ 98 ATCAAGTGATTGTCAACAATACGCTCGATGCTATTTTTATTTGTGATAAC 147
||||.||||||.|.||.||.|||||.|||||.||||||||.||...|||.
RBAM_013310__ 101 ATCACGTGATTATGAATAACACGCTTGATGCCATTTTTATATGCCGTAAG 150
BSNT_02277___ 148 GAAATGCGGATTGTTCAGGCAAATGAAGCAACAGAAAGGATGCTTCAAGT 197
||||||...||.||.|||||.||.||.||..|||...|||||.|.||..|
RBAM_013310__ 151 GAAATGAAAATCGTCCAGGCGAACGAGGCTGCAGCCCGGATGATGCAGAT 200
BSNT_02277___ 198 TGACTCGGA-AG----ATTTGAAAAAGCGTTCTGTTTTGGATTTTTTGTT 242
|||..|.|| || ||| ||.||.||.||..||||||||||.|.
RBAM_013310__ 201 TGAGGCAGAGAGCCTCATT-----AACCGCTCAGTCCTGGATTTTTTATA 245
BSNT_02277___ 243 TTCAATCCCAAAGGATGAACTGAATCTTTCCGTAAAGAAGTTTTTTAAAA 292
|||..|.||..||||.|||||||||....||||.||.||||||||.||||
RBAM_013310__ 246 TTCCGTGCCTCAGGAAGAACTGAATAAGGCCGTGAAAAAGTTTTTAAAAA 295
BSNT_02277___ 293 AAGGCTTTCTGTGGAAGGAGGTTCCGATCAGGCTTGATTGCGGGGCAACA 342
|||||..|||||||||.|||||.|||||.|.||||||..||||.||.||.
RBAM_013310__ 296 AAGGCCATCTGTGGAAAGAGGTGCCGATTAAGCTTGACAGCGGCGCGACG 345
BSNT_02277___ 343 AAATACATAGAGTTTCTGGCCAAAAGA-GGCATTGGTGAGGATTTCTTTT 391
||||||||.||.||.||.||| |.||| ||.|||||.|||||||..||||
RBAM_013310__ 346 AAATACATTGAATTCCTCGCC-AGAGACGGAATTGGGGAGGATTATTTTT 394
BSNT_02277___ 392 TTGTTGTCATGAGGGACATATCTTCTAAGAAGATTCTGGAGCGGGAATTC 441
||||.||.||||||||.||.||.|||||.||.||..|.|||||.||||||
RBAM_013310__ 395 TTGTGGTGATGAGGGATATCTCCTCTAAAAAAATATTAGAGCGCGAATTC 444
BSNT_02277___ 442 TCTATGAATGAACAGCTTTTTAAGGACTTGTTTGACAGAGCAGTTGACGG 491
||.|||||.||.|||||.|||||.||.|||||||||||.||.||.|||||
RBAM_013310__ 445 TCCATGAACGAGCAGCTGTTTAAAGATTTGTTTGACAGGGCTGTCGACGG 494
BSNT_02277___ 492 AATCGTCCTGTTTGATAAAGATGGCGGTTTTATTGATGCCAATTTGTCCT 541
.|||||.|||||||||||.||.|||||.|||||||||||.||..|.||.|
RBAM_013310__ 495 CATCGTGCTGTTTGATAAGGACGGCGGGTTTATTGATGCGAACCTCTCTT 544
BSNT_02277___ 542 TTTGTAAAAGCTTTGAAATCAATCATAATGAGCTGTCTCATTTATC---- 587
||||.|||||||||||.|||...||.|||||..||||.|||.|.||
RBAM_013310__ 545 TTTGCAAAAGCTTTGAGATCGGCCAGAATGAATTGTCCCATCTGTCGCTC 594
BSNT_02277___ 588 -----TTTGTA-TGAGTTCATAGACAGCGGCTCACGAAAAG-ATTTCGAC 630
||| || .|| |..|||.| ||.||||| ||.| ||.
RBAM_013310__ 595 CGCCATTT-TACCGA---CGGAGAAA-------ACAAAAAGCATCT-GAA 632
BSNT_02277___ 631 A-ATATCTGGAAGGCGCTCAACCGCAAGGGAAAAGCGAAGGGGGAGCTGC 679
| |.||||||.|..|.|||..|.|.||.|||||.||.||.||.||.||||
RBAM_013310__ 633 AGAAATCTGGGAAACCCTCCGCAGAAAAGGAAACGCCAAAGGAGAACTGC 682
BSNT_02277___ 680 CTGTCAAGCTTCGTTCAGGAGTTCAAAAACTATTTGAATTCACGATTACA 729
|.||.||||||||.||.||.|...|.||.||.||||||||.||||||||.
RBAM_013310__ 683 CCGTTAAGCTTCGGTCGGGCGAAGAGAAGCTGTTTGAATTTACGATTACG 732
BSNT_02277___ 730 TCAAACATCATCAGCGGTTTTTATATGTCCATTATGAGGGATATCACAGA 779
||.|||.|.||||||||.||.||.|||||||||||||||||.||.|||||
RBAM_013310__ 733 TCCAACGTAATCAGCGGGTTCTACATGTCCATTATGAGGGACATAACAGA 782
BSNT_02277___ 780 GAAGCGGTCTATGGAGCTGCAGCTCTTTAAAAGTGAGGAGCGCTTCAGAG 829
|||.||||..|||||..||.|.|||||||||||.||.|||||.|||.|.|
RBAM_013310__ 783 GAAACGGTTGATGGAATTGAAACTCTTTAAAAGCGAAGAGCGATTCCGCG 832
BSNT_02277___ 830 AAATCTTTGAAAATGCAATGGACGCCATCATCATCTGGTCGAATGACGGA 879
||||.||||||||.||.||||||||.||..||||.|||||..||||||||
RBAM_013310__ 833 AAATTTTTGAAAACGCCATGGACGCGATTGTCATTTGGTCTGATGACGGA 882
BSNT_02277___ 880 AGAATCGTAAAAGCGAATCAATCAGCCTGTAAAATTTTTGAGCTGCCGAT 929
|..||.|..|||||.||..||||.||.||....|||||.||.||||||||
RBAM_013310__ 883 AAGATTGCCAAAGCAAACGAATCGGCGTGCCGCATTTTCGAACTGCCGAT 932
BSNT_02277___ 930 GAATTTGCTGTTGAAAAGAAAGCTGTGTGATTTTCTCGTTGACTCGCAGC 979
|.||...|||.||.|.|..||..|.|||...|||.|||||||..|||||.
RBAM_013310__ 933 GGATAAACTGGTGGAGACGAATTTATGTACGTTTATCGTTGATCCGCAGA 982
BSNT_02277___ 980 AGAAATACAGCATAAC----GAAGAGGAAATACGCAAAATACGGAGAGAT 1025
|.||||||| ||| .||||..|||||.|.|||||||||.||.||
RBAM_013310__ 983 AAAAATACA----AACAGATTAAGAAAAAATATGAAAAATACGGGGAAAT 1028
BSNT_02277___ 1026 CAGAGAAGAGCTGCTGTTTCAAATGGGGAACGGGCAATTCAAAGAGCTTG 1075
|.|.|||||..||||||||||.||||..|||||.|||||.||||||||.|
RBAM_013310__ 1029 CCGTGAAGAAATGCTGTTTCAGATGGCAAACGGCCAATTTAAAGAGCTGG 1078
BSNT_02277___ 1076 AATTTACTTCAAAACGGACAATCCTTGAAAATCAGCATTTGACGATCTTA 1125
||||.||.||||||||.||.||.||||||..|||||||||.||.||.|||
RBAM_013310__ 1079 AATTCACATCAAAACGAACCATACTTGAAGGTCAGCATTTAACCATTTTA 1128
BSNT_02277___ 1126 AGAAATGTAAGCGACAGAAAGCGGATGGAAAAGGAGCTTCGGGAAAGCGA 1175
||||||||.|||||..|.||||||||||||||.||..|.|||||||||||
RBAM_013310__ 1129 AGAAATGTCAGCGATCGTAAGCGGATGGAAAAAGAATTGCGGGAAAGCGA 1178
BSNT_02277___ 1176 GCTGAAATTCAGAAAAGTGTTCAACGGCTCAATGGACGGCAATGTGTTGT 1225
||||||||||||||||||.|||||||||||||||||.|||||.||.||.|
RBAM_013310__ 1179 GCTGAAATTCAGAAAAGTATTCAACGGCTCAATGGATGGCAAGGTCTTAT 1228
BSNT_02277___ 1226 TCGACAATCAATACAGGATCATTGACGCCAACCCGTTAGCAAGCCATATT 1275
|.|||||.||||.|.|.||.||||||||.||.||..|.|||||||.|||.
RBAM_013310__ 1229 TTGACAACCAATTCCGCATTATTGACGCGAATCCTCTCGCAAGCCGTATA 1278
BSNT_02277___ 1276 TTGGGCCTGTCACATGAAGAGATCAAACAGCACAGCCTGTT--AGATATT 1323
.|.||..||.|..||||.|||.|.|.|..|.||| |.||| .||||||
RBAM_013310__ 1279 CTCGGTATGCCGGATGAGGAGCTGAGAGCGTACA--CCGTTCCGGATATT 1326
BSNT_02277___ 1324 ATTTCTGCTTA--TGAAATAGAAAA-TCTGGCATCACCGGCAAGGCAGAT 1370
.||||| ||| |||.||.||||| .|.||..| .||.||.||..||||
RBAM_013310__ 1327 CTTTCT--TTATTTGATATTGAAAACGCGGGTGT-TCCCGCCAGAAAGAT 1373
BSNT_02277___ 1371 TAATTTTGATGAAATGGACAACGAAATTCCATTTTTGCTGAGCAGCGGTG 1420
|.||||.||.|.||||||.||.|||||.||.||..||.|.||||||.|.|
RBAM_013310__ 1374 TGATTTAGAAGGAATGGATAATGAAATCCCCTTCCTGTTAAGCAGCAGCG 1423
BSNT_02277___ 1421 ATAACAGAAAACTCGAATTCTCATTTAAACGGAATATTATTCAAAATATG 1470
|.|.|.|.|||||.||||||||.||.|||.|.|||||.||||||||||||
RBAM_013310__ 1424 ACAGCCGCAAACTGGAATTCTCCTTCAAAAGAAATATCATTCAAAATATG 1473
BSNT_02277___ 1471 AACTTGGCTATCTTTAAAGACGTAACAGAGCGAAAAGAATTGGAGGAACG 1520
||..||||.|||||||||||.||.||||||...|||||..|.||.||..|
RBAM_013310__ 1474 AATCTGGCCATCTTTAAAGATGTCACAGAGGCCAAAGAGCTTGAAGAGAG 1523
BSNT_02277___ 1521 CCTGCGCAAATCAGATACCCTTCATGTTGTCGGCGAACTCGCAGCCGGCA 1570
.|||||.|||||.||.||.|||||||||||.||.||.||.||.||.||||
RBAM_013310__ 1524 GCTGCGGAAATCCGACACTCTTCATGTTGTAGGGGAGCTGGCGGCGGGCA 1573
BSNT_02277___ 1571 TTGCTCATGAAATCAGAAATCCGATGACTGCTCTTAAAGGCTTCATTCAG 1620
|.|||||.|||||||||||.||||||||.||.||.|||||.|||||||||
RBAM_013310__ 1574 TCGCTCACGAAATCAGAAACCCGATGACGGCGCTGAAAGGGTTCATTCAG 1623
BSNT_02277___ 1621 CTTCTGAAAGGGAGTGTCGAGGGAGACTACGCCCTTTACTTCAACGTGAT 1670
|||||..||||.||..|.||.||.||.||..|.||.|||||.|||||.||
RBAM_013310__ 1624 CTTCTTCAAGGAAGCATTGAAGGCGAATATTCTCTGTACTTTAACGTCAT 1673
BSNT_02277___ 1671 CACCTCAGAACTAAAGCGCATCGAATCCATCATCACCGAATTCTTGATTT 1720
.|||||||||.||||.||||||||.||.||||||||.|||||.||.||||
RBAM_013310__ 1674 TACCTCAGAATTAAAACGCATCGAGTCTATCATCACTGAATTTTTAATTT 1723
BSNT_02277___ 1721 TAGCCAAGCCCCAGGCCATTATGTATGAGGAAAAACATGTTACCCAAATT 1770
||||.||.||||||||.||..|.|||||.||||||.|.||.||.||.|||
RBAM_013310__ 1724 TAGCGAAACCCCAGGCGATATTATATGAAGAAAAAGACGTGACGCAGATT 1773
BSNT_02277___ 1771 ATGAGGGACACGATAGACCTTCTAAATGCGCAAGCCAATCTCAGCAATGT 1820
||||..||||||...||.|||.|.|||||.||.||||||||...||||||
RBAM_013310__ 1774 ATGAAAGACACGGCTGATCTTTTGAATGCCCAGGCCAATCTTGTCAATGT 1823
BSNT_02277___ 1821 ACAAATGCAACTTGATTTAATTGAC----GACATTCCCCCGATTTACTGT 1866
.||.||.||.| ||| |..|||| .||||.||.||||||||||||
RBAM_013310__ 1824 GCAGATCCATC-TGA---ACCTGACCGGAAACATCCCGCCGATTTACTGT 1869
BSNT_02277___ 1867 GAACCGAATCAGCTGAAACAGGTTTTTATCAATATATTAAAAAACGCCAT 1916
|||||||||||..|.||||||||.|||||||||||.||||||||||||||
RBAM_013310__ 1870 GAACCGAATCAATTAAAACAGGTGTTTATCAATATTTTAAAAAACGCCAT 1919
BSNT_02277___ 1917 CGAAGTGATGCCTGACGGCGGAAATATTTTTGTAACGATAAAGGCATTGG 1966
.|||||.|||||.|.||||||.|||||.|..||.||.||..||.|.|..|
RBAM_013310__ 1920 TGAAGTCATGCCGGGCGGCGGCAATATCTACGTGACCATTCAGTCTTCTG 1969
BSNT_02277___ 1967 ATCAAGATCATGTTCTTATCTCCTTAAAAGACGAGGGAATCGGAATGACA 2016
|||||||.||..||.|.||.||..|..||||.||.||||..||.||..|.
RBAM_013310__ 1970 ATCAAGACCACATTTTGATTTCTATTCAAGATGAAGGAACAGGCATTTCC 2019
BSNT_02277___ 2017 GAAGATAAATTAAAGCGCCTTGGTGAACCGTTTTATACGACAAAGGAACG 2066
|||||.||||||||.||.||.||||||||.|||||.||||||||.||..|
RBAM_013310__ 2020 GAAGACAAATTAAAACGTCTGGGTGAACCATTTTACACGACAAAAGACAG 2069
BSNT_02277___ 2067 GGGAACTGGACTTGGGCTTATGGTAAGCTATAAAATTATTGAAGAACATC 2116
||||||.||.||.||.||.|||||.|||||||||||.||.||||||||||
RBAM_013310__ 2070 GGGAACGGGTCTCGGTCTCATGGTCAGCTATAAAATCATCGAAGAACATC 2119
BSNT_02277___ 2117 AAGG-CGAAATTATGGTAGAAAGTGAAGAAGGGAAGGGCACCGTTTTCCA 2165
|.|| ||.|.|.|| ||.|||||||||||||||||||||||||||||.||
RBAM_013310__ 2120 AGGGACGCATTCAT-GTGGAAAGTGAAGAAGGGAAGGGCACCGTTTTTCA 2168
BSNT_02277___ 2166 TATTACGCTTCCTGTCAGACAGAATGCTGAAGAAAGAAGGAATGATGAAT 2215
|.|.||||||||..||.|.||||||.|.|||||||||||||..|..||||
RBAM_013310__ 2169 TTTGACGCTTCCGATCCGGCAGAATACCGAAGAAAGAAGGAGCGGGGAAT 2218
BSNT_02277___ 2216 GA 2217
||
RBAM_013310__ 2219 GA 2220
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