Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02269 and RBAM_013260

See Amino acid alignment / Visit BSNT_02269 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:57
# Commandline: needle
#    -asequence dna-align/BSNT_02269___htpX.1.9828.seq
#    -bsequence dna-align/RBAM_013260___ykrL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02269___htpX-RBAM_013260___ykrL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02269___htpX-RBAM_013260___ykrL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02269___htpX
# 2: RBAM_013260___ykrL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 907
# Identity:     704/907 (77.6%)
# Similarity:   704/907 (77.6%)
# Gaps:          23/907 ( 2.5%)
# Score: 2712.5
# 
#
#=======================================

BSNT_02269___      1 ATGGCGAAAAGAATTTTTCTGTTTATTCTAACGAATATTTTGGTGCTTAC     50
                     ||||||||||||||.||||||||||||.|||||||..|||||||..||||
RBAM_013260__      1 ATGGCGAAAAGAATATTTCTGTTTATTTTAACGAACCTTTTGGTCATTAC     50

BSNT_02269___     51 AACAATCGGGATCG---TTTTGTCTGTTTTAAGCTCTGTTACAGGAGTCG     97
                     .||||||||.||.|   ||..|..|.||..||||   |||||.||.||||
RBAM_013260__     51 GACAATCGGAATTGTGCTTACGATTATTACAAGC---GTTACCGGTGTCG     97

BSNT_02269___     98 GGACGTACTTTACAGCTGATGGCGGTATCGATCCAATGGCGCTTCTTGTG    147
                     |..|||| |.||||  ..|||||.|.||.||||..|||||..|.||.|||
RBAM_013260__     98 GCTCGTA-TATACA--AAATGGCCGCATTGATCTGATGGCATTGCTCGTG    144

BSNT_02269___    148 TTCAGTTTAGTCGTTGGGTTTGTCGGTTCCTTTACGTCTCTTGCGATGTC    197
                     ||||||.|.|||||.||.|||||||||||.||||..|||||.|..|||||
RBAM_013260__    145 TTCAGTCTTGTCGTCGGTTTTGTCGGTTCTTTTATTTCTCTCGGAATGTC    194

BSNT_02269___    198 CAGATGGATGGCAAAGACGATGATGGGCGTCAGAGTGCTGAATCCGAAAA    247
                     ||||||||||||.||.|||||||||||||||.|.|||.|.||||||||.|
RBAM_013260__    195 CAGATGGATGGCCAAAACGATGATGGGCGTCCGGGTGTTAAATCCGAAGA    244

BSNT_02269___    248 AACACTCGCTCAGCTATGAGGAACAGCAATTGGTTGATCGTGTTCACAGA    297
                     ||||.||||||||||||||||||||||||||||||||.|||||.||||||
RBAM_013260__    245 AACAGTCGCTCAGCTATGAGGAACAGCAATTGGTTGACCGTGTGCACAGA    294

BSNT_02269___    298 TTAAGCCGCTCTGCCGGTTTAACGAAAATGCCGGAAGTCGGGATTTACCG    347
                     ||...|||..|.||.||..|.|||||||||||.||||||||.|||||.|.
RBAM_013260__    295 TTGTCCCGTGCCGCAGGGATGACGAAAATGCCTGAAGTCGGCATTTATCA    344

BSNT_02269___    348 TTCACCTGAAGTAAACGCGTTTGCGACTGGACCGTCAAAACGCCGTTCAC    397
                     |||.||.||.||.||.||.||||||||.|||||.||.||.||||||||.|
RBAM_013260__    345 TTCCCCGGAGGTCAATGCTTTTGCGACCGGACCTTCTAAGCGCCGTTCGC    394

BSNT_02269___    398 TTGTCGCAGTATCGTCAGGGCTGCTGGAGCAGATGGATGACGCAGCGGTT    447
                     |||||||.||.||.|||||..|..||.|||||||||||||.||.|||||.
RBAM_013260__    395 TTGTCGCGGTTTCTTCAGGTTTATTGCAGCAGATGGATGATGCTGCGGTG    444

BSNT_02269___    448 GAAGGTGTGCTTGCCCACGAGGTCGCGCATATCACAAATGGTGATATGGT    497
                     |||||.||.||||||||.||.|||||.||.||||||||.|||||||||||
RBAM_013260__    445 GAAGGGGTTCTTGCCCATGAAGTCGCACACATCACAAACGGTGATATGGT    494

BSNT_02269___    498 AACAATGACGCTTTTACAAGGTATCGTTAATACCTTTGTCGTCTTTTTAT    547
                     .||.||||||||..|.||.||.|||||.|||||.||.|||||.||..|.|
RBAM_013260__    495 CACGATGACGCTGCTGCAGGGAATCGTCAATACGTTCGTCGTATTCCTTT    544

BSNT_02269___    548 CGCGTATCGCCGCTTGGATAGCAAGCCGTTTTGTCAAAGAAGATCTAGCG    597
                     |.||.|||||.||.|||.|.||||||||.||||||||||||||.||.|||
RBAM_013260__    545 CACGAATCGCGGCATGGGTTGCAAGCCGCTTTGTCAAAGAAGACCTCGCG    594

BSNT_02269___    598 CCGATCGTTCATTTTATTGCAATGATTATTTTTCAGATTGTCTTTTCGAT    647
                     |||.|||||||||||||.||.|||||..|.|||||||||.|||||||.||
RBAM_013260__    595 CCGGTCGTTCATTTTATCGCGATGATCGTGTTTCAGATTATCTTTTCCAT    644

BSNT_02269___    648 ACTTGGCAGCCTGGTTGTGTTTGCGTATTCACGCCATCGTGAATTCCATG    697
                     .||.|||||.||.||.||.||.||.||.||.||||||.|.||.||.||.|
RBAM_013260__    645 TCTCGGCAGTCTTGTCGTCTTCGCCTACTCGCGCCATAGAGAGTTTCACG    694

BSNT_02269___    698 CTGACAGGGGAGGAGCGGATCTTGCCGGCAAGGACAAGATGATTCATGCG    747
                     |||||.|.||.||.||.||.||||||||||||||.||.||||||||.||.
RBAM_013260__    695 CTGACCGCGGCGGTGCAGACCTTGCCGGCAAGGATAAAATGATTCACGCC    744

BSNT_02269___    748 CTGCGGACGCTTAAAAGCTATTCT--TCCCGGATTATG-----GAAGACG    790
                     |||||.|||||.|      |.|||  |.|.||| .|||     |||||.|
RBAM_013260__    745 CTGCGTACGCTGA------AGTCTTATACAGGA-CATGTGAATGAAGAGG    787

BSNT_02269___    791 ATCAGACAGCTGTCCAAACGTTAAAGATTAATGGCAAGAAGCGCTCTTCG    840
                     |.|||||.||.||.||.||||||||.|||||.|||||.||||..||.||.
RBAM_013260__    788 ACCAGACGGCGGTGCAGACGTTAAAAATTAACGGCAAAAAGCATTCGTCA    837

BSNT_02269___    841 CTTTTCTCTACTCACCCTGATTTAGATGAGCGAATCAGGCGGCTGGAAGC    890
                     ||.|||||.||.|||||||||.|.||||||||.|||.|..||||||||||
RBAM_013260__    838 CTGTTCTCCACACACCCTGATCTCGATGAGCGCATCCGCAGGCTGGAAGC    887

BSNT_02269___    891 TAAATAA    897
                     .||||||
RBAM_013260__    888 AAAATAA    894


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02269 and RBAM_013260

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
