Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_02240 and RBAM_013140

See Amino acid alignment / Visit BSNT_02240 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:56
# Commandline: needle
#    -asequence dna-align/BSNT_02240___ykzB.1.9828.seq
#    -bsequence dna-align/RBAM_013140___ykzB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02240___ykzB-RBAM_013140___ykzB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02240___ykzB-RBAM_013140___ykzB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02240___ykzB
# 2: RBAM_013140___ykzB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 156
# Identity:     126/156 (80.8%)
# Similarity:   126/156 (80.8%)
# Gaps:           0/156 ( 0.0%)
# Score: 510.0
# 
#
#=======================================

BSNT_02240___      1 ATGGAGGAAGAAAAAGCGGTCTCACTGGCAAAAGAAATTATAGAGTTGGA     50
                     ||||||.|||||||||||||.||.||||||||||||||.||.||.||.||
RBAM_013140__      1 ATGGAGAAAGAAAAAGCGGTTTCGCTGGCAAAAGAAATCATTGAATTAGA     50

BSNT_02240___     51 TATCAAGCGTGATGAAATGCTGGAGACGTTTATGCAGCTTGCCGGAGAAC    100
                     |||.||.||.||.||||||||||||.||||.||||||||||||||.||||
RBAM_013140__     51 TATGAAACGCGACGAAATGCTGGAGGCGTTCATGCAGCTTGCCGGGGAAC    100

BSNT_02240___    101 AGGCTTTTCAATTATTAAGATCGGTTCAAAACGGACAATACCGAAAATCT    150
                     |.|||||||...|..|.|||.|.||.||.|||||||..|||||||||.|.
RBAM_013140__    101 ATGCTTTTCCGCTGCTCAGAGCCGTCCAGAACGGACTTTACCGAAAAACA    150

BSNT_02240___    151 TCGTAA    156
                     ||.|||
RBAM_013140__    151 TCATAA    156


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.