Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00984 and RBAM_013100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:40
# Commandline: needle
# -asequence dna-align/BSNT_00984___ydhD.1.9828.seq
# -bsequence dna-align/RBAM_013100___ydhD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00984___ydhD-RBAM_013100___ydhD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00984___ydhD-RBAM_013100___ydhD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00984___ydhD
# 2: RBAM_013100___ydhD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1316
# Identity: 900/1316 (68.4%)
# Similarity: 900/1316 (68.4%)
# Gaps: 106/1316 ( 8.1%)
# Score: 2808.0
#
#
#=======================================
BSNT_00984___ 1 ATGTTTATCCATATCGTCGGGCCTGGTGATTCTTTGTTTTCGATAGGCAG 50
||||||.|.||||..||...|.|||||||.||.||.|||||.||..||||
RBAM_013100__ 1 ATGTTTGTTCATACAGTGCAGTCTGGTGACTCGTTATTTTCCATCAGCAG 50
BSNT_00984___ 51 AAGATACGG-TGCTTCTGTTG-----ATCA-AATACGGGGTGTGAATGGT 93
||..||||| |.| .|||||| |||| || |.||.||.||.
RBAM_013100__ 51 AAAGTACGGATAC-CCTGTTGACAGCATCAGAA------GCGTCAACGGG 93
BSNT_00984___ 94 TTAGATGAAACGAATATCGTGCCGGGGCAGGCTCTGCTTATCCCTCTTTA 143
.|.||.||||||||||||||.|||||||||||.||..|.|||||||||.|
RBAM_013100__ 94 CTTGAGGAAACGAATATCGTTCCGGGGCAGGCGCTTTTAATCCCTCTTAA 143
BSNT_00984___ 144 TGTATATACAGTCCAGCCTGGA--GATACGCTTACCGCCATTGCAGCCAA 191
||.||||||.||.||||| || ||||||..|.|||..||.||||..||
RBAM_013100__ 144 TGAATATACGGTTCAGCC--GAATGATACGTATGCCGTTATCGCAGGTAA 191
BSNT_00984___ 192 AGCGTTTGTGCC----ATTAG-AGC-GACTGCGAGCCGCCAATCCGGGCA 235
.||.|.|||||| || | ||| || ||| || ||.||.||||..|
RBAM_013100__ 192 GGCTTATGTGCCGCAGAT--GCAGCTGA-TGC-AG--GCAAACCCGGATA 235
BSNT_00984___ 236 -TCAGCCCAA-ATGCTTTACAAGCGGGAG----CAAAAATAACGATTCCT 279
||.|||.|| ..||| |||||.| ..|||.|.|.|||||||
RBAM_013100__ 236 TTCCGCCGAACCGGCT------GCGGGCGGGTATGAAAGTGAAGATTCCT 279
BSNT_00984___ 280 TCGATCTCAAATTACATTGCGGGAACGTT--AAGTTTTTACGTGCTCCGA 327
...|||||.||.||..||||||||||..| || |||||.||..|.||.
RBAM_013100__ 280 GATATCTCTAACTATCTTGCGGGAACCCTGCAA--TTTTATGTCATTCGG 327
BSNT_00984___ 328 AATCCTGACCTCGATCGGGAATTAATCAATGATTATGCGCCATACTCGTC 377
|..|||||....|||.|.||..||||.|||||||.||||||.||.||.||
RBAM_013100__ 328 ACGCCTGAAGCGGATAGAGAGCTAATTAATGATTTTGCGCCGTATTCTTC 377
BSNT_00984___ 378 TTCGATTTCGATTTTCGAATACCATATTGCACCGAACGGCGA---CATTG 424
..|||||||..|.||.|||||.|||.|||...||||.||.|| ||||
RBAM_013100__ 378 GGCGATTTCTTTGTTTGAATATCATTTTGGCTCGAATGGAGATATCATT- 426
BSNT_00984___ 425 CAAACCAATTGAATGATGCGG--CCGCTATTGAGACAACATGGCAAAGAC 472
|||.|.||.||.|| |.| ||||.||.||.||.||||||||.| ||
RBAM_013100__ 427 --AACGATTTAAACGA--CAGAACCGCAATAGAAACCACATGGCAGA-AC 471
BSNT_00984___ 473 -GGGTGACG-CCGCTGGCAACAATAACGAACCTTACATCAGGAGGCTTCA 520
|.||| || |||||.||....||.|||||.||.|||..|||.||.||||
RBAM_013100__ 472 AGAGTG-CGTCCGCTTGCCGTCATTACGAATCTGACAGAAGGGGGATTCA 520
BSNT_00984___ 521 GTACGGAGATT-GTTCACCAAGTGCTAAACAATCCGACAGCGAGAACCAA 569
||.|||| ||| |..||.||||||||..|.||||||||.||.|||||.||
RBAM_013100__ 521 GTCCGGA-ATTAGCCCATCAAGTGCTGCAAAATCCGACGGCAAGAACGAA 569
BSNT_00984___ 570 TCTGGTCAACAACATTTATGACTTAGTTTCC---------ACAAGGGGAT 610
|||.||||||||.| |.||.||| |.||.|||||
RBAM_013100__ 570 TCTCGTCAACAATA---------TCGTCTCCTTAACCGTAAGAAAGGGAT 610
BSNT_00984___ 611 ATGGCGGTGTCACAATCGATTTTGAGCAGGTGAGCGCCGCGGATCGCGAT 660
|.||||||||.|..|||||||||||.|.|||.||.|..||.||..|.||.
RBAM_013100__ 611 ACGGCGGTGTAAATATCGATTTTGAACGGGTCAGAGAAGCTGACAGGGAC 660
BSNT_00984___ 661 CTTTTCACTGGGTTTTTACGCCAGCTGAGAGATC--GCCTTCAG-GCGGG 707
||.|||||.||.|||.|.||.||| |.|.|.|.| ||.||||| ||
RBAM_013100__ 661 CTCTTCACAGGATTTCTCCGGCAG-TTAAAAACCCGGCTTTCAGAGC--- 706
BSNT_00984___ 708 AGGGTAT------GTGCTGACGATAGCTGTTCCGGCAAAAACAAGCGATA 751
|| |.|.|.||||||.|.||||||||.||||||||.|||.
RBAM_013100__ 707 -----ATCAGCTCGCGTTAACGATATCGGTTCCGGCGAAAACAAGTGATG 751
BSNT_00984___ 752 ATATTCCCTGGCTGAGAGGCTACGATTACGGGGGGATAGGAGCGGTTGTC 801
...|.||.||||||||.||.||.||||||||.||.||.|||||.||.|||
RBAM_013100__ 752 CAGTGCCGTGGCTGAGGGGATATGATTACGGCGGAATCGGAGCCGTCGTC 801
BSNT_00984___ 802 AATTATATGTTTATCATGGCTTATGATTGGCATCATGCCGGAAGTGAGCC 851
.||||||||||.||.|||||.||.||.|||||.||.|||||.||||||||
RBAM_013100__ 802 GATTATATGTTCATTATGGCGTACGACTGGCACCACGCCGGCAGTGAGCC 851
BSNT_00984___ 852 GGGTCCTGTAGCGCCGATTACTGAAATAAGGAGAACCATTGAGTTTACGA 901
|||.||.||.|||||..|.||.||..|.|||..|||.||..|.|||.|.|
RBAM_013100__ 852 GGGACCCGTGGCGCCTTTGACAGAGGTCAGGCAAACGATCAATTTTGCCA 901
BSNT_00984___ 902 TTGC-GCA-GGTGCCGAGCAGAAAAATCATTATCGGAGTCCCGCTCTACG 949
| | ||| |||||||||.||||||.|.|||.||||.||.|||||.||||
RBAM_013100__ 902 T--CAGCAGGGTGCCGAGAAGAAAAGTGATTCTCGGTGTTCCGCTGTACG 949
BSNT_00984___ 950 GGTACGACTGGATCATCCCGTACCAGCCGGGCACAGTTGCTTCAGCGATT 999
||||.||.|||.|.||.|||||||..|||||.||..|.|..||.||.||.
RBAM_013100__ 950 GGTATGATTGGGTGATTCCGTACCGTCCGGGAACGATCGGATCCGCCATC 999
BSNT_00984___ 1000 TCAAATCAAAACGCAATCGAAAGAGCGATGAGGTACCAATCCCCGATACA 1049
||.|||||...|||.||.||||..||.||||.|.|.|||||...|||.|.
RBAM_013100__ 1000 TCCAATCAGCGCGCCATGGAAATGGCCATGAAGCATCAATCAGTGATCCG 1049
BSNT_00984___ 1050 ATATT--CAGCCGAATATCAATCACCGTTTTTCCGGTACAGTGATCAGCA 1097
.|||| |||| |..|.|..||.||.|..||||||||.|.||||.|..|
RBAM_013100__ 1050 TTATTCCCAGC--AGGAGCGTTCCCCTTACTTCCGGTATACTGATGAAAA 1097
BSNT_00984___ 1098 GGGGCGGACGCATGAGGTATGGTTTGAGGATGTCAGAAGCATGAGCCGGA 1147
.||..|.||||||||.||.||||||||||||||..||||||||||....|
RBAM_013100__ 1098 TGGAAGAACGCATGAAGTGTGGTTTGAGGATGTGCGAAGCATGAGTGAAA 1147
BSNT_00984___ 1148 AGATGCAGATCGTCCGCGAATACAGATTGCAGGCTATTGGCGCTTGGCAG 1197
|.|||....||||.||.||.|.|.||.|||||||.||.|||||.|||||.
RBAM_013100__ 1148 AAATGGTTCTCGTTCGGGAGTTCGGACTGCAGGCGATCGGCGCGTGGCAA 1197
BSNT_00984___ 1198 TTAACGCTGGGCTTTACACCGGGCCCATGGCTTCTGCGGAAATTTTTTAC 1247
||||||||.||.||.|.|||||||||.|||||.||..||||.|||||.||
RBAM_013100__ 1198 TTAACGCTCGGTTTCAAACCGGGCCCGTGGCTGCTTAGGAACTTTTTCAC 1247
BSNT_00984___ 1248 GATCAGAAAAGTGTAA 1263
||||.|||||.|.||.
RBAM_013100__ 1248 GATCCGAAAAATATAG 1263
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