Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02226 and RBAM_013090
See
Amino acid alignment /
Visit
BSNT_02226 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:55
# Commandline: needle
# -asequence dna-align/BSNT_02226___ykoE.1.9828.seq
# -bsequence dna-align/RBAM_013090___ykoE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02226___ykoE-RBAM_013090___ykoE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02226___ykoE-RBAM_013090___ykoE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02226___ykoE
# 2: RBAM_013090___ykoE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 612
# Identity: 446/612 (72.9%)
# Similarity: 446/612 (72.9%)
# Gaps: 24/612 ( 3.9%)
# Score: 1545.5
#
#
#=======================================
BSNT_02226___ 1 ATGAAAAGCTGGAAAGTAAAAGAAATTGTCATCATGTCCGTTATCAGTAT 50
|||||||..||||||.|.|.||||||||||.|||||||.||.||||||.|
RBAM_013090__ 1 ATGAAAAATTGGAAAATGAGAGAAATTGTCGTCATGTCGGTCATCAGTGT 50
BSNT_02226___ 51 CGTATTTGCCGTTGTTTATTTATTATTTACACATTTCGGAAAC------G 94
.||||||||.||..||||||||.|||..||.||| |.||.| |
RBAM_013090__ 51 TGTATTTGCTGTCATTTATTTAGTATCAACTCAT---GCAAGCAATATAG 97
BSNT_02226___ 95 TGCTTGCAGGTATGTTTGGGCC-GATCGCCTATGAACCGATTTACGGCAT 143
.| ||||| ||.|||.|||| |||...||||||||||||||||||.||
RBAM_013090__ 98 CG---GCAGG-ATTTTTCGGCCGGATGAGCTATGAACCGATTTACGGTAT 143
BSNT_02226___ 144 TTGGTTTATCGTTTCTGTGATCGCCGCGTACATGATTCGAAAACCGGGTG 193
.|||||||||||.||.|||||.|||||||||||.||||.|||||||||.|
RBAM_013090__ 144 CTGGTTTATCGTCTCGGTGATTGCCGCGTACATTATTCAAAAACCGGGAG 193
BSNT_02226___ 194 CGGCGCTCGTTTCTGAAATCATTGCCGCTCTCGTTGAGTGCCTGCTGGGA 243
||||.|||||||||||||||||.|||||..|.||.||||||.|.||.|||
RBAM_013090__ 194 CGGCTCTCGTTTCTGAAATCATCGCCGCGTTTGTGGAGTGCTTACTCGGA 243
BSNT_02226___ 244 AATCCGTCTGGCCCGATGGTCATCGTCATTGGCATTGTTCAAGGGCTCGG 293
||||||||.||.||||||||.||..|.||.||.||.|..||.||..||||
RBAM_013090__ 244 AATCCGTCAGGACCGATGGTGATTCTGATCGGGATCGCACAGGGAATCGG 293
BSNT_02226___ 294 GGCTGAGGCTGTGTTTCTTGCAACACGCTGGAAAGCATACTCTCTCCCTG 343
.||.||.||.||.|||.||||.|||||||||...|..||..|.||.||.|
RBAM_013090__ 294 TGCGGAAGCGGTCTTTTTTGCGACACGCTGGCGGGTGTATACCCTGCCCG 343
BSNT_02226___ 344 TCCTTATGCTGGCCGGTATGGGGTCTTCAGTAGCCAGCTTTATCTATGAT 393
|.|||.|..|..||||||||||||||||.||..|.|||||.||.|||||.
RBAM_013090__ 344 TGCTTCTTTTATCCGGTATGGGGTCTTCTGTGACGAGCTTCATTTATGAC 393
BSNT_02226___ 394 CTCTTTGTTTCTGGCTATGCAGCCTATTCA--CCAGG-TTATCTGCTCAT 440
.|.||.|||||.||.||..|.| |.||.| ||.|| ||||..|| |.|
RBAM_013090__ 394 TTGTTCGTTTCCGGATACTCTG--TTTTGAATCCGGGTTTATTAGC-CGT 440
BSNT_02226___ 441 TATGCTTGTGATCCGTCTCATTTCCGGCGCGCTTTTGGCGGGGCTTCTCG 490
.||||||.|.||||||||..|.||.||.||||||.|.||.||.|||||||
RBAM_013090__ 441 CATGCTTCTCATCCGTCTGGTCTCAGGTGCGCTTCTTGCCGGCCTTCTCG 490
BSNT_02226___ 491 GAAAAGCTGTTAGCGACTCTCTCGCTTATACAGGTGTGTTAAACGGAATG 540
|.|||||..|.||.||..|.||.|||||.|||||.|||.|.|.|||.|||
RBAM_013090__ 491 GCAAAGCAATCAGTGATGCGCTGGCTTACACAGGGGTGCTGAGCGGCATG 540
BSNT_02226___ 541 GCACTCGGAAAGGAACTGAAAAAGAAACGGAAGCGGGCGTCAG--AACAT 588
||.||||||||..||.|.||.||||||..|||.|.| ||.|| ||.||
RBAM_013090__ 541 GCGCTCGGAAAACAATTCAAGAAGAAAAAGAAACAG--GTGAGCCAAGAT 588
BSNT_02226___ 589 GCAAGCCTTTGA 600
|||.||.|.|||
RBAM_013090__ 589 GCAGGCATGTGA 600
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.