Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02226 and RBAM_013090

See Amino acid alignment / Visit BSNT_02226 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:55
# Commandline: needle
#    -asequence dna-align/BSNT_02226___ykoE.1.9828.seq
#    -bsequence dna-align/RBAM_013090___ykoE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02226___ykoE-RBAM_013090___ykoE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02226___ykoE-RBAM_013090___ykoE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02226___ykoE
# 2: RBAM_013090___ykoE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 612
# Identity:     446/612 (72.9%)
# Similarity:   446/612 (72.9%)
# Gaps:          24/612 ( 3.9%)
# Score: 1545.5
# 
#
#=======================================

BSNT_02226___      1 ATGAAAAGCTGGAAAGTAAAAGAAATTGTCATCATGTCCGTTATCAGTAT     50
                     |||||||..||||||.|.|.||||||||||.|||||||.||.||||||.|
RBAM_013090__      1 ATGAAAAATTGGAAAATGAGAGAAATTGTCGTCATGTCGGTCATCAGTGT     50

BSNT_02226___     51 CGTATTTGCCGTTGTTTATTTATTATTTACACATTTCGGAAAC------G     94
                     .||||||||.||..||||||||.|||..||.|||   |.||.|      |
RBAM_013090__     51 TGTATTTGCTGTCATTTATTTAGTATCAACTCAT---GCAAGCAATATAG     97

BSNT_02226___     95 TGCTTGCAGGTATGTTTGGGCC-GATCGCCTATGAACCGATTTACGGCAT    143
                     .|   ||||| ||.|||.|||| |||...||||||||||||||||||.||
RBAM_013090__     98 CG---GCAGG-ATTTTTCGGCCGGATGAGCTATGAACCGATTTACGGTAT    143

BSNT_02226___    144 TTGGTTTATCGTTTCTGTGATCGCCGCGTACATGATTCGAAAACCGGGTG    193
                     .|||||||||||.||.|||||.|||||||||||.||||.|||||||||.|
RBAM_013090__    144 CTGGTTTATCGTCTCGGTGATTGCCGCGTACATTATTCAAAAACCGGGAG    193

BSNT_02226___    194 CGGCGCTCGTTTCTGAAATCATTGCCGCTCTCGTTGAGTGCCTGCTGGGA    243
                     ||||.|||||||||||||||||.|||||..|.||.||||||.|.||.|||
RBAM_013090__    194 CGGCTCTCGTTTCTGAAATCATCGCCGCGTTTGTGGAGTGCTTACTCGGA    243

BSNT_02226___    244 AATCCGTCTGGCCCGATGGTCATCGTCATTGGCATTGTTCAAGGGCTCGG    293
                     ||||||||.||.||||||||.||..|.||.||.||.|..||.||..||||
RBAM_013090__    244 AATCCGTCAGGACCGATGGTGATTCTGATCGGGATCGCACAGGGAATCGG    293

BSNT_02226___    294 GGCTGAGGCTGTGTTTCTTGCAACACGCTGGAAAGCATACTCTCTCCCTG    343
                     .||.||.||.||.|||.||||.|||||||||...|..||..|.||.||.|
RBAM_013090__    294 TGCGGAAGCGGTCTTTTTTGCGACACGCTGGCGGGTGTATACCCTGCCCG    343

BSNT_02226___    344 TCCTTATGCTGGCCGGTATGGGGTCTTCAGTAGCCAGCTTTATCTATGAT    393
                     |.|||.|..|..||||||||||||||||.||..|.|||||.||.|||||.
RBAM_013090__    344 TGCTTCTTTTATCCGGTATGGGGTCTTCTGTGACGAGCTTCATTTATGAC    393

BSNT_02226___    394 CTCTTTGTTTCTGGCTATGCAGCCTATTCA--CCAGG-TTATCTGCTCAT    440
                     .|.||.|||||.||.||..|.|  |.||.|  ||.|| ||||..|| |.|
RBAM_013090__    394 TTGTTCGTTTCCGGATACTCTG--TTTTGAATCCGGGTTTATTAGC-CGT    440

BSNT_02226___    441 TATGCTTGTGATCCGTCTCATTTCCGGCGCGCTTTTGGCGGGGCTTCTCG    490
                     .||||||.|.||||||||..|.||.||.||||||.|.||.||.|||||||
RBAM_013090__    441 CATGCTTCTCATCCGTCTGGTCTCAGGTGCGCTTCTTGCCGGCCTTCTCG    490

BSNT_02226___    491 GAAAAGCTGTTAGCGACTCTCTCGCTTATACAGGTGTGTTAAACGGAATG    540
                     |.|||||..|.||.||..|.||.|||||.|||||.|||.|.|.|||.|||
RBAM_013090__    491 GCAAAGCAATCAGTGATGCGCTGGCTTACACAGGGGTGCTGAGCGGCATG    540

BSNT_02226___    541 GCACTCGGAAAGGAACTGAAAAAGAAACGGAAGCGGGCGTCAG--AACAT    588
                     ||.||||||||..||.|.||.||||||..|||.|.|  ||.||  ||.||
RBAM_013090__    541 GCGCTCGGAAAACAATTCAAGAAGAAAAAGAAACAG--GTGAGCCAAGAT    588

BSNT_02226___    589 GCAAGCCTTTGA    600
                     |||.||.|.|||
RBAM_013090__    589 GCAGGCATGTGA    600


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