Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02206 and RBAM_012940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:54
# Commandline: needle
# -asequence dna-align/BSNT_02206___proA.1.9828.seq
# -bsequence dna-align/RBAM_012940___proA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02206___proA-RBAM_012940___proA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02206___proA-RBAM_012940___proA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02206___proA
# 2: RBAM_012940___proA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1288
# Identity: 941/1288 (73.1%)
# Similarity: 941/1288 (73.1%)
# Gaps: 80/1288 ( 6.2%)
# Score: 3321.5
#
#
#=======================================
BSNT_02206___ 1 ATGAGTGAAGTTTCTG-TAAAAGCGAAGC--TTGCGAAAGAAGCAGCAGC 47
|||||||||||.| || .|||||| ||| |.||.||||||||.||.||
RBAM_012940__ 1 ATGAGTGAAGTAT-TGCAAAAAGC--AGCCTTGGCAAAAGAAGCGGCTGC 47
BSNT_02206___ 48 CGAAATGATCATGAAAACAACAGCCGAGAAGGATGAGGCGCTCAGCCTC- 96
|||||||.||||||||||.||.||.||.||..|.||.||||| ||
RBAM_012940__ 48 CGAAATGGTCATGAAAACGACGGCTGAAAAAAACGAAGCGCT-----TCA 92
BSNT_02206___ 97 ----ATTGCAAACGGACTCCGCAAAGAACTG------GATTTTCTCTTGG 136
||||||.||||||||.|.||.|||| | |||| ||..
RBAM_012940__ 93 ATGTATTGCAGACGGACTCAGAAATGAAC-GCCGGCTGATT-----TTAA 136
BSNT_02206___ 137 CGGAGAATGCA-AAAGACATTG----TGAACGGAAAAGA-GAATGGTTTA 180
|.|||||| || |||||.|||| .|.||||||.||| ||.||
RBAM_012940__ 137 CAGAGAAT-CAGAAAGATATTGAAGCGGGACGGAACAGAGGACTG----- 180
BSNT_02206___ 181 ACACCGGACATCATTGACCGTCTCACATTGGATGAGAAACGTATACGCGA 230
|||||.|||||.||||||.|.||.||..|.|||||.|||||..|.|.|||
RBAM_012940__ 181 ACACCTGACATTATTGACAGGCTGACTCTTGATGAAAAACGCCTGCTCGA 230
BSNT_02206___ 231 TATCGCGGACGCGGTGGAGCTCTTAATC-GACTTAGCGGACCCAATCGGC 279
||||||||||||.|||||.||.|||||| |.||| |..||.||..||||.
RBAM_012940__ 231 TATCGCGGACGCCGTGGAACTATTAATCGGTCTT-GAAGATCCCGTCGGT 279
BSNT_02206___ 280 GACTCTCTTGAAACGATTGAAAAAGAAAACGGCCTGTTTATTGAAAAAAT 329
||.||.||.||.||.|||.|||||||.||.||..|.|..|||||||||||
RBAM_012940__ 280 GAATCGCTGGAGACCATTCAAAAAGAGAATGGATTATCCATTGAAAAAAT 329
BSNT_02206___ 330 CCGTGTGCCGCTCGGTGTCGTAGGAATGATTTATGAGGCGAGGCCAAACG 379
|||.|||||.||.||.||.||.||.|||||.||||||||.||.||.||||
RBAM_012940__ 330 CCGCGTGCCCCTTGGAGTAGTGGGCATGATCTATGAGGCCAGACCGAACG 379
BSNT_02206___ 380 TCACAGTTGATGCGGCTACCCTTTGCCTGAAGACAGGGAACGCGGTTGTG 429
|.||.||.||.|||||.||.||.||.|||||.||.||.||||||||||||
RBAM_012940__ 380 TTACCGTAGACGCGGCCACACTCTGTCTGAAAACCGGAAACGCGGTTGTG 429
BSNT_02206___ 430 CTGCGGGGAAGCTCCTCAGCCATCCACAGCAACAAAGCGCTCGTCAGTGT 479
||..|.|||||.||.||.||||||||||||||||.||||||.||||||||
RBAM_012940__ 430 CTCAGAGGAAGTTCTTCCGCCATCCACAGCAACATAGCGCTTGTCAGTGT 479
BSNT_02206___ 480 CATTCACAGAGCACTTGAGCAATCAGCGCTTCCGATTCACGCTGTGCAGC 529
.||..|..|.|||||.|.||..|||..||||||||||.|.||.||.||||
RBAM_012940__ 480 GATGAAACGCGCACTGGGGCTGTCAAAGCTTCCGATTGATGCCGTTCAGC 529
BSNT_02206___ 530 TGATTGAGGATACGAGCAGAGAGACAGCAAAAGAGCTCTTTACGTTAAAT 579
|.||.||.|||||.||||.|||.||.||.|||.||||||||||.||||||
RBAM_012940__ 530 TCATAGAAGATACAAGCAAAGAAACCGCCAAACAGCTCTTTACATTAAAT 579
BSNT_02206___ 580 GATGGTTTAGACGTATTGATTCCGCGCGGAGGCAAGAAACTGATTGATCT 629
||.||..|.||.||||||||.||||||||.||.||.||..|.||||||||
RBAM_012940__ 580 GACGGGCTGGATGTATTGATCCCGCGCGGCGGTAAAAATTTAATTGATCT 629
BSNT_02206___ 630 CGTTGTGAGAGAATCAACAGTTCCTGTATTAGAAACGGGAGCAGGAAACT 679
.||.||.||.||||||||.||.||.||.||||||||.|||||.||.||.|
RBAM_012940__ 630 AGTGGTCAGGGAATCAACCGTACCCGTTTTAGAAACCGGAGCGGGCAATT 679
BSNT_02206___ 680 GCCACATATTCATTGACGAAACAGCCAAACCTCAAATGGCAGAAAAGGTT 729
|||||.|.|.|||.||.||..||||..|.||||||||||||....||||.
RBAM_012940__ 680 GCCACGTGTACATAGATGAGTCAGCAGATCCTCAAATGGCAAGCGAGGTC 729
BSNT_02206___ 730 GTCGTAAATGCCAAAACTCAGCGCCCTTCTGTATGCAACGCGATTGAATC 779
|||.|.|||||||||||.|||||.|||||.||.|||||||||||||||||
RBAM_012940__ 730 GTCATCAATGCCAAAACACAGCGTCCTTCGGTCTGCAACGCGATTGAATC 779
BSNT_02206___ 780 ATTGCTGATTC----ACAAGGCTTGGGC--AAGACAGCACGG--GAAAGA 821
..|..|||||| |.|| ||||| ||| |.||||| |||||
RBAM_012940__ 780 TCTTTTGATTCATGAAAAA----TGGGCCGAAG--AACACGGACGAAAG- 822
BSNT_02206___ 822 ATTGCTGGACCAGCTG---GAAAACGCGGGAGTTGAAATTCGGGGTGA-- 866
.|||||.|.|||||| ||||| .||.||.||..|.||.||.||
RBAM_012940__ 823 -CTGCTGAATCAGCTGACAGAAAA---AGGGGTGGAGCTCCGAGGAGACC 868
BSNT_02206___ 867 ---TGAATTG--GTATGTGAACTTCATCCTTCAAGC-AAACAAGCATCAA 910
|||.||| | |||..|.|| |||||| |||||||||..|.
RBAM_012940__ 869 AGGTGATTTGCAG-------ACTGGAGCC-TCAAGCGAAACAAGCAGAAG 910
BSNT_02206___ 911 AAGAAGATTGGGAAACCGAATTCTTAGCGCCTGTCCTCAGCGTAAAAACG 960
|||..|||||||.|.|.||.|.|.|.|||||..|.|||||.||.||||||
RBAM_012940__ 911 AAGCCGATTGGGGAGCGGAGTACCTGGCGCCGATTCTCAGTGTGAAAACG 960
BSNT_02206___ 961 GTTGAAAACGTCCAAGAAGCTGTGAAGCATATCCAACAATACGGCACCAA 1010
||..|..||||.||.||.||.||....||.||.||.||.||||||||.||
RBAM_012940__ 961 GTGCAGGACGTACAGGAGGCGGTCCGCCACATTCAGCAGTACGGCACAAA 1010
BSNT_02206___ 1011 TCATTCTGAAGCGATTTTAACTGAAAATGACAAAAACGCAGCATATTTTC 1060
.|||||.|||||.|||.|.||.||.||.|.|.|..|.||.||.||.||.|
RBAM_012940__ 1011 CCATTCAGAAGCCATTCTGACGGAGAACGCCGAGCATGCGGCTTACTTCC 1060
BSNT_02206___ 1061 AAACGGCTGTCGATGCTGCCGCTGTCTATCATAACGCGTCAACCCGCTTT 1110
|.||.||.||.||.||.|||||.||.||||||||.||.||||||||.|||
RBAM_012940__ 1061 AGACCGCCGTTGACGCCGCCGCCGTGTATCATAATGCTTCAACCCGGTTT 1110
BSNT_02206___ 1111 ACCGACGGCTTTGAATTCGGCTACGGAGCCGAAATCGGCATCAGCACGCA 1160
||.|||||.|||||||||||.|||||||||||||||||||||||||||||
RBAM_012940__ 1111 ACGGACGGTTTTGAATTCGGATACGGAGCCGAAATCGGCATCAGCACGCA 1160
BSNT_02206___ 1161 AAAGCTTCATGCAAGAGGACCGATGGGGCTTCCTGCACTGACTTCTACAA 1210
|||||||||.||.|||||.||||||||||||||.||..|.||.|||||||
RBAM_012940__ 1161 AAAGCTTCACGCGAGAGGGCCGATGGGGCTTCCGGCGTTAACATCTACAA 1210
BSNT_02206___ 1211 AATACATCATTAAAGGAACTGGGCAAATCCGTGAATAG 1248
||..||||||.|||||||..||.||||||||.|.|||.
RBAM_012940__ 1211 AAATCATCATCAAAGGAAACGGACAAATCCGCGTATAA 1248
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