Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02185 and RBAM_012810
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:52
# Commandline: needle
# -asequence dna-align/BSNT_02185___dppE.1.9828.seq
# -bsequence dna-align/RBAM_012810___dppE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02185___dppE-RBAM_012810___dppE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02185___dppE-RBAM_012810___dppE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02185___dppE
# 2: RBAM_012810___dppE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1654
# Identity: 1241/1654 (75.0%)
# Similarity: 1241/1654 (75.0%)
# Gaps: 56/1654 ( 3.4%)
# Score: 4582.5
#
#
#=======================================
BSNT_02185___ 1 ATGAAACGAGTGAAAAAGCTATGGGGCATGGGT---CTTGCATTAGGACT 47
.||||||||..|||||..||.||| .||||..|.| |
RBAM_012810__ 1 ---------ATGAAAAAGAGATGGGCGATCGGTGTGATTGCTGTTG---T 38
BSNT_02185___ 48 TTCGTTTGCGCTGATGGGGTGCACAGCAAATGAACAGGCCGGAAAAGAAG 97
|||||||||.||||||||.||.|||||.|||||||||||.||.|.||||
RBAM_012810__ 39 TTCGTTTGCTCTGATGGGCTGTACAGCCAATGAACAGGCGGGGACAGAA- 87
BSNT_02185___ 98 GCAGTCATGATAAGGCAAAA-ACCA--GCGGAGAAAAGGTGCTGTATGTA 144
|..|..||.|||||| |.|| |.||.||||.|||||||....|.
RBAM_012810__ 88 -----CCCGGAAAAGCAAAAGAACAGGGGGGTGAAACGGTGCTGCGGCTC 132
BSNT_02185___ 145 AATAATGAAAATGAACCGACTTCATTCGATCCGCCGATCGGCTTTAATAA 194
|||||.||||||||.|||||.|||.|.||||||||||||||.||||||||
RBAM_012810__ 133 AATAACGAAAATGAGCCGACCTCACTTGATCCGCCGATCGGATTTAATAA 182
BSNT_02185___ 195 TGTGTCATGGCAGCCGTTAAATAACATCATGGAGGGGCTGACGCGTCTTG 244
|||.||.|||||||||.|.||||||||||||||.||..|||||.|.||.|
RBAM_012810__ 183 TGTTTCCTGGCAGCCGCTGAATAACATCATGGAAGGATTGACGAGGCTCG 232
BSNT_02185___ 245 GCGAAGATCATGAGCCCGAGCCGGCAATGGCGGAGAAATGGTCTGTTTCG 294
|..|||||.||.|||||||.|||||.||||||||.|..|||...||.||.
RBAM_012810__ 233 GAAAAGATAATAAGCCCGAACCGGCCATGGCGGAAAGCTGGAAGGTGTCC 282
BSNT_02185___ 295 AAAGATAATAAAACTTACACATTTACGATTCGGGAAAATGCGAAATGGAC 344
...|||||....||.||.||.||.|..||.|||||.||.||..|||||||
RBAM_012810__ 283 GCTGATAAGCTGACATATACCTTCAATATCCGGGATAACGCCGAATGGAC 332
BSNT_02185___ 345 AAACGGAGATCCTGTAACAGCCGGAGACTTCGAATACGCGTGGAAGCGGA 394
|||.||.|||||.||.||.||.|.||||||||..|||||.|||||.||||
RBAM_012810__ 333 AAATGGCGATCCCGTTACGGCGGAAGACTTCGTGTACGCCTGGAAACGGA 382
BSNT_02185___ 395 TGCTTGATCCGAAAAAAGGCGCTTCATCGGCATTCCTAGGTTATTTTATT 444
||||.||||||||||..|||||.||.||.||.||.||.||.|||.|.||.
RBAM_012810__ 383 TGCTCGATCCGAAAACGGGCGCATCTTCCGCTTTTCTCGGCTATATGATC 432
BSNT_02185___ 445 GAAGGCGGCGAAGCATATAACAGCGGGAAAGGGAAAAAAGACGATGTGAA 494
.|||||||.||||.||.|||||||||.|||||.|||.||||.||.|||||
RBAM_012810__ 433 AAAGGCGGGGAAGAATTTAACAGCGGAAAAGGCAAACAAGAAGACGTGAA 482
BSNT_02185___ 495 GGTGACGGCAAAGGATGATCGAACCCTTGAAGTTACACTGGAAGCACCGC 544
.||.||||||||.|||.|...|||.||||..||.|||.|||..|||||||
RBAM_012810__ 483 AGTCACGGCAAAAGATAAAAAAACGCTTGTCGTCACATTGGCGGCACCGC 532
BSNT_02185___ 545 AAAAATATTTTCTGAGCGTTGTGTCCAATCCTGCGTATTTTCCGGTAAAT 594
|..|.||||||||||||||.|||||||||||.||||||||.|||.|.|||
RBAM_012810__ 533 AGGATTATTTTCTGAGCGTCGTGTCCAATCCGGCGTATTTCCCGATTAAT 582
BSNT_02185___ 595 GAAAAGGTCGATAAAGACAATCCGAAGTGGTTTGCTGAGGCGGATACATT 644
||.|||||||..||.|...|||||||.|||||..||||.||..|.||.||
RBAM_012810__ 583 GAGAAGGTCGCCAAGGCTGATCCGAAATGGTTCACTGAAGCAAAAACCTT 632
BSNT_02185___ 645 TGTCGGAAACGGCCCGTTTAAGCTGACGGAATGGAAGCATGATGACAGCA 694
||||||.|||||.|||||.||.||||||||||||||||||||.|||||||
RBAM_012810__ 633 TGTCGGCAACGGGCCGTTCAAACTGACGGAATGGAAGCATGACGACAGCA 682
BSNT_02185___ 695 TCACAATGGAGAAAAGCGACACGTATTGGGATAAAGATACAGTGAAGCTT 744
|.||.||||..||||.|||.|||||||||||||||.|.||.|||||.||.
RBAM_012810__ 683 TGACGATGGTCAAAAACGAGACGTATTGGGATAAAAAGACGGTGAAACTG 732
BSNT_02185___ 745 GATAAGGTGAAATGGGCGATGGTCAGTGACAGAAATACAGATTACCAGAT 794
|||||.||.|.|||||||||||||||||||.|.|||||.||.||.|||||
RBAM_012810__ 733 GATAAAGTCACATGGGCGATGGTCAGTGACCGGAATACCGACTATCAGAT 782
BSNT_02185___ 795 GTTTCAATCAGGGGAACTTGATACCGCTTATGTCCCTGCTGAGCTGAGTG 844
|||.||.||.|||||..|.||||||||.|.|||.||.||.||||||||.|
RBAM_012810__ 783 GTTCCAGTCGGGGGATTTGGATACCGCCTTTGTGCCGGCAGAGCTGAGCG 832
BSNT_02185___ 845 ATCAGCTGCTTGATCAGGATAACGTCAATAT-------TGTTGACCAGGC 887
|.||||||.|.| .||||.|| |||.| || .||.|||||
RBAM_012810__ 833 AGCAGCTGATGG--GAGGAAAA----AATGTCCGCACGTG-GGATCAGGC 875
BSNT_02185___ 888 GGGTCTCTATTTCTATCGATTTAATGTCAACATGGAGCCATTCCAAAATG 937
.||.||||||||||||||.|||||.||.||.||||||||.||.|||||||
RBAM_012810__ 876 CGGACTCTATTTCTATCGTTTTAACGTAAAAATGGAGCCGTTTCAAAATG 925
BSNT_02185___ 938 AAAACATCAGAAAAGCCTTTGCGATGGCTGTGGATCAAGAGGAAATTGTA 987
||||.|||||||||||.||.|||...||..|.|||||..|.|||||....
RBAM_012810__ 926 AAAAGATCAGAAAAGCGTTCGCGGCAGCGATTGATCAGAAAGAAATCACG 975
BSNT_02185___ 988 AAGTACGTCACGAAAAATAATGAAAAACCGGCGCGCGCCTTTGTATCGCC 1037
.|.||.||.||.|||||.|.||||||.|||||.|..|||||||||||.||
RBAM_012810__ 976 GATTATGTGACCAAAAACAGTGAAAAGCCGGCACATGCCTTTGTATCCCC 1025
BSNT_02185___ 1038 TGGGTTTACGCAGCCTGACGGCAAAGATTTCCGTGAAGCAGGCGG-AGAC 1086
.||.|||||.|||||||||||.|||||||||||.|||||.||||| ||
RBAM_012810__ 1026 GGGATTTACTCAGCCTGACGGGAAAGATTTCCGCGAAGCGGGCGGCAG-- 1073
BSNT_02185___ 1087 TTGA-TCAAGCCTAACGAA--AGCAAAGCGAAGCAGCTGCTAGAAAAGGG 1133
||.| |.||.||..|.||| || ||||.||..|.|||||.|||||.||
RBAM_012810__ 1074 TTTATTAAATCCGGATGAATCAG--AAGCCAAAAAACTGCTGGAAAAAGG 1121
BSNT_02185___ 1134 CATGAAGGAAGAAAACTATAATAAGCTTCCTGCGATCACGCTTACTTACA 1183
||||...|||||..|.|||.|.|||||.||.||..|.||..|.||.||||
RBAM_012810__ 1122 CATGGCAGAAGAGCATTATGACAAGCTGCCCGCCGTTACATTGACATACA 1171
BSNT_02185___ 1184 GCACAAAGCCGGAGCATAAAAAGATTGCCGAAGCTATTCAGCAAAAATTG 1233
|||||||.|||||||||||.||.||.||.|||||.||||||||.||..|.
RBAM_012810__ 1172 GCACAAAACCGGAGCATAAGAAAATAGCGGAAGCGATTCAGCAGAAGCTC 1221
BSNT_02185___ 1234 AAAAATAGCCTTGGAGTCGATGTAAAGCTGGCCAATATGGAATGGAACGT 1283
||||.|...||.||..|.||.||.|||||.||||||||||||||||||||
RBAM_012810__ 1222 AAAAGTGTGCTCGGTATAGACGTTAAGCTCGCCAATATGGAATGGAACGT 1271
BSNT_02185___ 1284 ATTTTTAGAGGATCAAAAAGCGCTGAAATTCCAATTCTCTCAAAGCTCAT 1333
.||||||||.||.||.||||..|||||.|||||.||||||||||||||||
RBAM_012810__ 1272 CTTTTTAGAAGAGCAGAAAGGACTGAAGTTCCAGTTCTCTCAAAGCTCAT 1321
BSNT_02185___ 1334 TTTTGCCTGATTATGCAGACCCTATCAGTTTTCTGGAAGCCTTTCAAACG 1383
||||.||.|||||.|||||.||.|||||||||||.||.||.||.||.|||
RBAM_012810__ 1322 TTTTACCGGATTACGCAGATCCGATCAGTTTTCTAGAGGCTTTCCAGACG 1371
BSNT_02185___ 1384 GGTAATTCGATGAACCGCACAGGCTGGGCCAATAAAGAATACGATCAGCT 1433
|.||||||.|||||||||||.|||||||.||.....|.|||||| |.|||
RBAM_012810__ 1372 GATAATTCCATGAACCGCACCGGCTGGGGCAGCGCGGCATACGA-CGGCT 1420
BSNT_02185___ 1434 -GATCAAACAGGCGAAAAATGAAGCCGATGAAAAAACACGGTTCTCTCTT 1482
.|||||.|||||.|||.|.||||||||||..||||.|||.||..|.||.
RBAM_012810__ 1421 ACATCAAGCAGGCAAAACAGGAAGCCGATGCCAAAAAACGTTTTGCGCTC 1470
BSNT_02185___ 1483 ATGCATCAAGCTGAAGAGCTGCTCATCAATGAAGCGCCGATCATCCCGGT 1532
||||||.||||.|||.|.||||||||.||.||.||.||||||||.|||.|
RBAM_012810__ 1471 ATGCATAAAGCGGAAAAACTGCTCATGAACGAGGCTCCGATCATTCCGAT 1520
BSNT_02185___ 1533 TTATTTTTATAATCAGGTTCACCTGCAAAATGAACA----AGTAAAGGGA 1578
|||.|||||.||||||||.||.||||| ||||| .||.|||||.
RBAM_012810__ 1521 TTACTTTTACAATCAGGTGCATCTGCA----GAACAGCGGCGTGAAGGGC 1566
BSNT_02185___ 1579 ATTGTCCGTCACCCTGTCGGCTATATCGATTTAAAATGGGCAGATAAAAA 1628
||||||||.|||||.|||||.||.||.|||.|.||.|||||.||.||...
RBAM_012810__ 1567 ATTGTCCGGCACCCCGTCGGTTACATTGATCTGAAGTGGGCGGAAAAGTC 1616
BSNT_02185___ 1629 CTGA 1632
||||
RBAM_012810__ 1617 CTGA 1620
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