Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04576 and RBAM_012760
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:01
# Commandline: needle
# -asequence dna-align/BSNT_04576___yubD.1.9828.seq
# -bsequence dna-align/RBAM_012760___yubD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04576___yubD-RBAM_012760___yubD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04576___yubD-RBAM_012760___yubD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04576___yubD
# 2: RBAM_012760___yubD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1709
# Identity: 1032/1709 (60.4%)
# Similarity: 1032/1709 (60.4%)
# Gaps: 322/1709 (18.8%)
# Score: 2889.0
#
#
#=======================================
BSNT_04576___ 1 ATG-AAGACAAAACACTATTGGGTGATTTCTTTGCTCGCCGTCTTAGCGG 49
||| |||| ||||||..|.|||.|.||||||.|||||||.||.||.||||
RBAM_012760__ 1 ATGAAAGA-AAAACATCACTGGATTATTTCTCTGCTCGCTGTATTGGCGG 49
BSNT_04576___ 50 TCGGGCCGGGATTGATGTCTAACACGGCATTGTCGTCAGTTCAAGGCCTT 99
||||||||||..|||||||.||.||.||..|.|||.|.||.|||.|||||
RBAM_012760__ 50 TCGGGCCGGGGCTGATGTCGAATACCGCTCTTTCGGCTGTCCAAAGCCTT 99
BSNT_04576___ 100 GTTCAGAAAGCGGT-----TGGAACAAGTGTCTTCACATCAGTAAATCCG 144
||.|.|.|..|||| .|||| ||.| ||.|| ||..|..|||||
RBAM_012760__ 100 GTCCGGCAGACGGTCGGCGGGGAA-AACT---TTGAC-TCTTTTCATCCG 144
BSNT_04576___ 145 A-TATTGATCGGCAATATGGCCTTTGCCTTGTTAGTTCCGGCAGGACCGC 193
| |||| |||||.||||||||.||||||||.||.||.|||||.||.|||
RBAM_012760__ 145 ATTATT-ATCGGTAATATGGCATTTGCCTTATTCGTGCCGGCGGGGCCG- 192
BSNT_04576___ 194 TGCTGAGGAAAAA-ATTCGGTGCGCGTCCCGTCTATCTGGCTTC-ATTAC 241
|..|.|.|||||| ||||||..|.||.||.||||||.||..||| |||.|
RBAM_012760__ 193 TATTTAAGAAAAAGATTCGGCTCCCGGCCTGTCTATATGATTTCAATTGC 242
BSNT_04576___ 242 C-----TGTCTTTATACTAG-GCTCACTGCTCATCGCATGT-TCAGGCGA 284
| |||| ||...|| ||||..|||| || ||| .||...||
RBAM_012760__ 243 CGCGGGTGTC---ATCGGAGCGCTCCTTGCT----GC-TGTGACAAATGA 284
BSNT_04576___ 285 TATT-----GCATGGATGGCGGCAGGGCGCTTTTTACAGGGGGCGGCAAC 329
|||| || |.||.||.||.||.|||||||||||.||.||..|
RBAM_012760__ 285 TATTTATCCGC-----TCGCCGCGGGCCGTTTTTTACAGGGAGCTGCGGC 329
BSNT_04576___ 330 AGGCGTCATGCTGATGATTATGATTCCAATGCTTGTACTGTCATTCCCGA 379
.|||...|||||||||||||||||.||.|||||.||.||.||.||.||||
RBAM_012760__ 330 GGGCACTATGCTGATGATTATGATCCCGATGCTGGTGCTTTCGTTTCCGA 379
BSNT_04576___ 380 TTGAACGCAGGAACTATGCACTGCTTGTGCTGATCGGGGGATTCTATGGT 429
||||.|||.||||.||.|||.|..|||||.|.|||||.|||||.||.||.
RBAM_012760__ 380 TTGAGCGCCGGAATTACGCATTATTTGTGTTAATCGGCGGATTTTACGGG 429
BSNT_04576___ 430 TCTGTTATCATCGGCACAATCCTCGGAACCATTGCAACAAGCTGCGGGCA 479
||.||.||.||.||.||..|..|.||.||....||..|||||..|||.||
RBAM_012760__ 430 TCCGTCATTATGGGAACCGTTTTAGGCACGGCGGCGGCAAGCGCCGGCCA 479
BSNT_04576___ 480 TTGGAGATGGCTGTTTTTCATCTTTGGCACCT--TGTCCCTGATCGGTGT 527
||||...||||||||...|||.||||| ||| ||||..|..||||..|
RBAM_012760__ 480 TTGGCATTGGCTGTTCGGCATTTTTGG--CCTGCTGTCTTTTTTCGGCCT 527
BSNT_04576___ 528 CGCGGTGAGCTATTTCTTTCTTC---ATGACGAGCATCACGGGGCGTCGG 574
|....|.||.|||.|.|..||.| ||||||..|||
RBAM_012760__ 528 CATTTTCAGTTATATGTGGCTGCGGGATGACGCTCAT------------- 564
BSNT_04576___ 575 ATCAAGAACAGCCGCTTGATCATGCGGAAA----TTCTTTT------ATC 614
||.| ||||.|||| |.|.||| |||
RBAM_012760__ 565 ------AAAA-----------ATGCTGAAAAATGTCCATTTGACGGCATC 597
BSNT_04576___ 615 TGTTTTC--CTTGCCGCAGCCTCAGCGGT------------TTCATTCAT 650
.|||||| .|.||.|..|..|||||.|| |.||||.||
RBAM_012760__ 598 GGTTTTCTGTTAGCGGGTGTATCAGCCGTGCTGACCGCCTATACATTTAT 647
BSNT_04576___ 651 TTTTCTGCAAAAATGGGGGCTGTCATCGGGTTATGTATGG-----ATTGG 695
|..|||||..||||||||..|.||||| |||| |||||
RBAM_012760__ 648 TCATCTGCCGAAATGGGGCTTTTCATC---------ATGGCAGACATTGG 688
BSNT_04576___ 696 TTTCGGGGT---GACGTTATGTTTGCTCATTGGTCT-AT-----TGATTG 736
||||.| ||.| |.|..|..|||||..||| || ||||..
RBAM_012760__ 689 ---CGGGATTTGGAGG--AAGCATCGTCATTCTTCTGATCTTGCTGATCA 733
BSNT_04576___ 737 TGGAATATAAAGTGAAA--AACCCAT----TCATATCTATTAAACTGATG 780
||.|.||.| |||| || ||| |.||.||.||||||||.|||
RBAM_012760__ 734 TGCAGTACA----GAAACGAA--CATGCGCTGATTTCGATTAAACTTATG 777
BSNT_04576___ 781 CTGCTGCCAAAACCGGTGCTTGGCTTATTGATCATAGCTGCAGGGACGAT 830
|||.|.|||||.|||.|.||.||..|.||.||.||.|||||.||.|..||
RBAM_012760__ 778 CTGATTCCAAAGCCGATTCTGGGTGTTTTCATGATCGCTGCGGGCAGTAT 827
BSNT_04576___ 831 AACGGTAGCTGTCAGCCTGTCTGCTTTTCAAGGCTTGCT-----CCGTCA 875
..|..||||.|||||.||.|||||.|||||.||...||| ||| ||
RBAM_012760__ 828 TTCCATAGCGGTCAGTCTTTCTGCATTTCACGGGGAGCTTCAGACCG-CA 876
BSNT_04576___ 876 AATGTATGATATTTCTCAGGAGCATCTC-------ATTCTTTTACACTTG 918
|||.||||.||.|| |.||| ||||.||||..| |
RBAM_012760__ 877 ----TATCATATGTCACA-----AACTCAACTGATATTCCTTTATGC--G 915
BSNT_04576___ 919 ACTCTTTTAATCGGAGTGGCGATCGCGGC-----------CATTTTGAGC 957
|..|||||....||.|||||.|||||.|| |||| |||
RBAM_012760__ 916 AGCCTTTTGGGAGGCGTGGCCATCGCCGCTGTCATCAGTGCATT---AGC 962
BSNT_04576___ 958 GCTCTGTTTTATGATAAAGTCGGACCAGGGATGCTCGGTATTATCGGCGG 1007
.||||||||||||||.||.||.||||||||.||.| |.|
RBAM_012760__ 963 --------ATATGATAAAGTCGGTCCGGGCATGCTCGGCATAA----CAG 1000
BSNT_04576___ 1008 ACTC----ATTCTCGTCTTTGTGAATTTTCAATGG----CTGCATATGCA 1049
.||| ||.||.||.||.||||||||.|||||| |.|||
RBAM_012760__ 1001 GCTCTGTTATACTGGTGTTCGTGAATTTCCAATGGATGACGGCA------ 1044
BSNT_04576___ 1050 GGATCGATCAT----CTCTTTATATGTTCGCGGCACTGTTTATCATGCTT 1095
|||| ||||| |.|||..|.|.||.||||..||.||..|.|||||.
RBAM_012760__ 1045 -GATC-ATCATATACCGCTTATTCTATTTGCGGGGCTTTTCGTGATGCTG 1092
BSNT_04576___ 1096 GCAGCGGGAACAGGCCTGACAGTCGCCGCAGGGCTGATGGGAGCTGCCAT 1145
||.||.||.|||||.||.|..||.||.||.||.|||||||||||.||..|
RBAM_012760__ 1093 GCGGCCGGGACAGGGCTTATTGTGGCAGCCGGACTGATGGGAGCCGCGTT 1142
BSNT_04576___ 1146 GGGAGGCCCGCTGCCTGATTTGGTCAAGAGAATGACAGCTGTTCAGTTTT 1195
|||.||.|||||.||.||..||||.||..|.|||||.||.||||||||||
RBAM_012760__ 1143 GGGCGGACCGCTTCCGGAACTGGTGAAACGCATGACGGCAGTTCAGTTTT 1192
BSNT_04576___ 1196 TAAGATTGTTTGTCTATATGGGAGTTCCTATTCTCATCGGCTTTTTCACG 1245
|.||..|.||..|.||||||||.|..|||.||.|.||.||.|.|||.|||
RBAM_012760__ 1193 TGAGGCTTTTCATTTATATGGGCGCACCTGTTTTAATAGGGTATTTTACG 1242
BSNT_04576___ 1246 AAAAAAGATGCTGCCAGACAAAGCGGTT-----------CGGTACAGGAT 1284
||||.|||||||.|| |.|| ||.|| |||.|||
RBAM_012760__ 1243 AAAAGAGATGCTTCC-GGCA---CGCTTCGGGGCGCGCGCGGCACA---- 1284
BSNT_04576___ 1285 TCTAT-----GATGA-CTGCTTAT-----CAT-----GATCT-CTTCTTC 1317
|.|| .|||| |||||.|| ||| |||.| .|||||
RBAM_012760__ 1285 -CAATCGCCGCATGACCTGCTGATGGGGACATACAGCGATTTGTTTCTT- 1332
BSNT_04576___ 1318 ATTTCTTTTATCCTTAGCGTGCTGCTCGTCTGCCTGTCATTTTGT-ATGA 1366
|||.||||.|||.|.|||.||||..|.||.||..|.||| ||||| ||||
RBAM_012760__ 1333 ATTGCTTTCATCTTAAGCTTGCTTTTAGTGTGTTTATCA-TTTGTCATGA 1381
BSNT_04576___ 1367 ATGCCACTGGAATGGGGCACAAGCTGGCACATAAACCACATGATAAAGCG 1416
||||.||.||.|||||.||.||||||||.||||||||.||||
RBAM_012760__ 1382 ATGCGACCGGCATGGGACATAAGCTGGCGCATAAACCGCATG-------- 1423
BSNT_04576___ 1417 AAAACAGCTTCGGAAAAACCGGCCGTTTCAGCAGAAGG----------TT 1456
|||.||| |.|||||..|| ||
RBAM_012760__ 1424 ------------------CCGTCCG--TAAGCAGGCGGCTGAACAGCCTT 1453
BSNT_04576___ 1457 TGTCGAAGGCAACTGTCAA---ATC--TTATAAAGTAATAAATGATACGG 1501
.|.||.||||..||| || ||| ..||.|.||.||....|||...|
RBAM_012760__ 1454 CGCCGCAGGCTCCTG--AACCGATCAGGCATCAGGTCATTCCCGATCATG 1501
BSNT_04576___ 1502 AATATCGTAATGCACTCAGAAATTT-----------------ACAAAAAT 1534
||||..|.|.|||..|||||.|.|| .||||||.
RBAM_012760__ 1502 AATACAGAAGTGCGGTCAGACAGTTTCAGCGTCATCATATAAGCAAAAAC 1551
BSNT_04576___ 1535 AG------- 1536
||
RBAM_012760__ 1552 AGTATGTAA 1560
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