Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02174 and RBAM_012710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:51
# Commandline: needle
# -asequence dna-align/BSNT_02174___ykbA.1.9828.seq
# -bsequence dna-align/RBAM_012710___ykbA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02174___ykbA-RBAM_012710___ykbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02174___ykbA-RBAM_012710___ykbA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02174___ykbA
# 2: RBAM_012710___ykbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1349
# Identity: 1019/1349 (75.5%)
# Similarity: 1019/1349 (75.5%)
# Gaps: 64/1349 ( 4.7%)
# Score: 3780.5
#
#
#=======================================
BSNT_02174___ 1 ATGCATTCTGAAGACAACGGTTTGAAAAAAGAGATAGGCCTCTTGT---- 46
|||||...||||||.|||||..|.|||||||||||.||||| |
RBAM_012710__ 1 ATGCAGATTGAAGAGAACGGACTTAAAAAAGAGATCGGCCT----TACCA 46
BSNT_02174___ 47 TTGCCCTTACTCTTGTCATCGGAACCATTATCGGTTCTGGTGTTTTTATG 96
|.|||||..|.|||||.|||||.|||||.||||||||.||.||.||||||
RBAM_012710__ 47 TCGCCCTCTCACTTGTTATCGGCACCATCATCGGTTCCGGCGTATTTATG 96
BSNT_02174___ 97 AAGCCCGGCGCTGTGCTTGCTTATTCAGGCGATTCAAAAATGGCGCTTTT 146
||.||.|||||.||||||||.||.||.||.|||.|.||||..||||||.|
RBAM_012710__ 97 AAACCAGGCGCCGTGCTTGCCTACTCCGGTGATGCGAAAACCGCGCTTAT 146
BSNT_02174___ 147 CGCCTGGCTGTTAGGCGGTATTTTAACACTGGCGGGCGGTTTGACAATCG 196
|||.|||||||||||.||.|||||.||.||.||.|||||.|||||..|.|
RBAM_012710__ 147 CGCGTGGCTGTTAGGAGGCATTTTGACGCTTGCCGGCGGCTTGACCGTTG 196
BSNT_02174___ 197 CGGAAATCGGAACGCAGATTCCAAAAACCGGCGGGCTTTATACGTACCTT 246
||||||||||.||.||||||||.|||||.|||||.||||||||.||.||.
RBAM_012710__ 197 CGGAAATCGGCACTCAGATTCCGAAAACGGGCGGACTTTATACATATCTA 246
BSNT_02174___ 247 GAAGAAGTGTACGGCGAGTTTTGGGGATTTTTGTGCGGCTGGGTGCAGAT 296
|||||||||||||||||.||||||||.|||||||||||.|||||.||.||
RBAM_012710__ 247 GAAGAAGTGTACGGCGAATTTTGGGGCTTTTTGTGCGGATGGGTTCAAAT 296
BSNT_02174___ 297 TATCATTTACGGCCCGGCGATTATTGGCGCGCTGGGTTTATATTTTGGAT 346
|||||||||||||||.||.|||||.||.||..|.||.||.|||||.||.|
RBAM_012710__ 297 TATCATTTACGGCCCCGCCATTATCGGAGCAATCGGCTTGTATTTCGGCT 346
BSNT_02174___ 347 CTTTAATGGCGAATCTT-TTCGGCTGGGGAT-----CTGGACTATCAAAA 390
|.||.||||||.| ||| ||| ..|.||||| |||| ||.|||
RBAM_012710__ 347 CCTTGATGGCGCA-CTTGTTC-AATTGGGATTCCGGCTGG----TCTAAA 390
BSNT_02174___ 391 GTCATTGGAATTATAGCAGTTCTCTTTTTATGCGTCATTAATATTATCGG 440
.|.||.||.|||..|||.|||.|.||||||.||.|||||||.||||||||
RBAM_012710__ 391 TTGATCGGGATTTCAGCCGTTTTGTTTTTAAGCATCATTAACATTATCGG 440
BSNT_02174___ 441 TACAAAATACGGCGGTTTTGTCCA---AACGCTGACAACGATCGGAAAAC 487
.||.|||||.|||||..|.||||| || |.||.||..||||.|||.
RBAM_012710__ 441 AACGAAATATGGCGGCATCGTCCAGGGAA---TTACGACTGTCGGCAAAT 487
BSNT_02174___ 488 TGATTCCGATTGCCTGCATCATCATCTTTGGCCTTTGGAAAGGCGATCAG 537
|||||||||||..||||||.|||.|.||.|||||||||||||||||||||
RBAM_012710__ 488 TGATTCCGATTATCTGCATGATCGTATTCGGCCTTTGGAAAGGCGATCAG 537
BSNT_02174___ 538 CACATCTTCACAGCAGT---AAACGAAAGCATTTCTGATATGAACTTCGG 584
||.||.||.|||||.|| ||.| |||||.||.||.|||||.|||||
RBAM_012710__ 538 CATATTTTTACAGCCGTTACAAGC---AGCATGTCGGACATGAATTTCGG 584
BSNT_02174___ 585 GGCGGCTATTTTAGCTACGTTGTTTGCTTATGACGGATGGATTCTCCTTG 634
.||.||.||..|.||.||.||||||||||||||||||||||||||.||||
RBAM_012710__ 585 CGCTGCCATACTGGCCACCTTGTTTGCTTATGACGGATGGATTCTGCTTG 634
BSNT_02174___ 635 CCGCTCTCGGCGGAGAAATGAAAAATCCCGAAAAGCTGCTGCCACGCGCT 684
|.||.||||||||.||||||||||||||.|||||||||||.||..|.||.
RBAM_012710__ 635 CGGCACTCGGCGGCGAAATGAAAAATCCGGAAAAGCTGCTCCCGAGAGCG 684
BSNT_02174___ 685 ATGACGGGCGGATTATTAATTGTAACGGCGATCTATATTTTCATTAATTT 734
||||||||||||.|..|..|.||.||.||.||.|||.||||||||||.||
RBAM_012710__ 685 ATGACGGGCGGACTGCTGGTCGTCACCGCCATTTATCTTTTCATTAACTT 734
BSNT_02174___ 735 TGCATTGCTTCACATCCTGTCAGCGAACGAAATTGTCACGCTTGGTGAAA 784
|||..||||.|||||.||..|.||||.|||.||.||||..||.|||||||
RBAM_012710__ 735 TGCGCTGCTGCACATTCTTCCTGCGACCGACATCGTCAAACTCGGTGAAA 784
BSNT_02174___ 785 ATGCGACAAGCACCGCGGCAACCATGCTGTTCGG-GTCAATTGGCGGAAA 833
|||||||..|||||||.||....||||||||.|| |.| ||.||.|||||
RBAM_012710__ 785 ATGCGACCGGCACCGCTGCCGGAATGCTGTTTGGCGAC-ATCGGAGGAAA 833
BSNT_02174___ 834 GCTGATCAGTGTAGGGATTATCGTCAGCATCTTTGGGTGCTTAAATGGAA 883
..|||||||.||.||.||.||||||||||||||.||.||.|||||.||||
RBAM_012710__ 834 ATTGATCAGCGTCGGAATCATCGTCAGCATCTTCGGCTGTTTAAACGGAA 883
BSNT_02174___ 884 AGGTGCTTTCTTTCCCGCGTGTTTCATTTGCAATGGCGGAACGCAAACAG 933
||.|.||..||||.||||||||.||.|||||.|||||||||||.||||||
RBAM_012710__ 884 AGATTCTCGCTTTTCCGCGTGTCTCGTTTGCGATGGCGGAACGGAAACAG 933
BSNT_02174___ 934 CTTCCATTTGCTGAAAAACTGTCACATGTACACCCGTCGTTCCGCACACC 983
||.||.|||||.|.|.|..|.||.|..||.||.|||.||||||||||.||
RBAM_012710__ 934 CTGCCGTTTGCCGGACAGATTTCGCGGGTGCATCCGACGTTCCGCACCCC 983
BSNT_02174___ 984 ATGGATTGCAATTTCTTTTCAAATTGCTTTAGC-----TTTGATTATGAT 1028
.||||||||..|.||.|||||.||.||..|.|| ||| |||||||
RBAM_012710__ 984 GTGGATTGCCGTGTCATTTCAGATCGCGCTGGCCATTATTT--TTATGAT 1031
BSNT_02174___ 1029 -GCTGATCAGCAACCCTGATAAGCTCTCAGAAATCTCCATTTTCATGATC 1077
|| ||||||.||.||||||||.||.||||||||.|||||||||||.
RBAM_012710__ 1032 CGC----CAGCAATCCCGATAAGCTGTCTGAAATCTCTATTTTCATGATT 1077
BSNT_02174___ 1078 TACATCTTTTATGTGATGGCCTTTTTTGCAGTGTTTATTCTCCG-----C 1122
||.||.|||||.||.|||||||||||.||.||||||||.|||.| .
RBAM_012710__ 1078 TATATTTTTTACGTCATGGCCTTTTTCGCCGTGTTTATCCTCAGAAAAAA 1127
BSNT_02174___ 1123 AAGCGAGCAAAGGGAAAAAAGCGCGCCTACAGTGTTCCGCTTTATCCATT 1172
||||| || ||||||..||||||||||||.||.||..|.|||||..|
RBAM_012710__ 1128 AAGCG-GC----GGAAAACCGCGCGCCTACAGCGTGCCTTTGTATCCGAT 1172
BSNT_02174___ 1173 TATGCCAATTCTGGCAATCGCGGGCTCCTTCTTTGTGCTAGGCAGCACAC 1222
.||.||..||.||||.||||||||.||..|.||||||||...||||||..
RBAM_012710__ 1173 CATTCCTGTTTTGGCCATCGCGGGTTCACTGTTTGTGCTGATCAGCACGA 1222
BSNT_02174___ 1223 TCATTACAGATACAATGAGCTGCGGATTATCCATCCTCATCGGCCTTGCC 1272
||||||||||||||.|||||||||...|.|||.||.|.||||||||.|||
RBAM_012710__ 1223 TCATTACAGATACACTGAGCTGCGCGCTGTCCCTCTTGATCGGCCTCGCC 1272
BSNT_02174___ 1273 GGACTGCCTGTCTATTACGGGATGAAAAAAC----GAAAAGCAAGCTGA 1317
||.|||||..|.||||...||.|| |||||| |||| ||.||||
RBAM_012710__ 1273 GGGCTGCCGCTTTATTTTTGGCTG-AAAAACGGCAGAAA---AAACTGA 1317
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