Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02173 and RBAM_012700
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:51
# Commandline: needle
# -asequence dna-align/BSNT_02173___ykaA.1.9828.seq
# -bsequence dna-align/RBAM_012700___ykaA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02173___ykaA-RBAM_012700___ykaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02173___ykaA-RBAM_012700___ykaA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02173___ykaA
# 2: RBAM_012700___ykaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 619
# Identity: 537/619 (86.8%)
# Similarity: 537/619 (86.8%)
# Gaps: 2/619 ( 0.3%)
# Score: 2345.0
#
#
#=======================================
BSNT_02173___ 1 ATGATAAGAAGAAAAAAAGATAAGTTCTCACTCCTTTTAACAGAAATTGC 50
|||||||.|||||||||||||||||||||||||||||||||||||||.||
RBAM_012700__ 1 ATGATAAAAAGAAAAAAAGATAAGTTCTCACTCCTTTTAACAGAAATCGC 50
BSNT_02173___ 51 AAAGAACATAGACGAAACTGCAGAATATTTTGTGAATTTTAAGGTCACTA 100
|||.||||||||||||||.||||||||||||||.||.|||||.||.||.|
RBAM_012700__ 51 AAAAAACATAGACGAAACCGCAGAATATTTTGTCAACTTTAAAGTGACGA 100
BSNT_02173___ 101 ACCAAACGACTCTTAAA-GAATTTGCAGATACGTTAAAGGAATATGAAAC 149
||||.|||||| ||||| ||||||||.|||||||||||.||.|.||||||
RBAM_012700__ 101 ACCAGACGACT-TTAAAGGAATTTGCCGATACGTTAAAAGAGTTTGAAAC 149
BSNT_02173___ 150 AAAAGGTGACAATCATGTCCATGTCATGATTAAAGAGCTTAACAAAGCGT 199
||||||.||.||||||||.||||||||||||||||||||.||||||||.|
RBAM_012700__ 150 AAAAGGAGATAATCATGTTCATGTCATGATTAAAGAGCTGAACAAAGCTT 199
BSNT_02173___ 200 TCATCACTCCTATTGAGCGCGAAGATATCCTTCAGCTGACAAACAGCTTG 249
|.||||||||.|||||.||.|||||.||||||.||||||||||||||.|.
RBAM_012700__ 200 TTATCACTCCCATTGAACGTGAAGACATCCTTGAGCTGACAAACAGCCTC 249
BSNT_02173___ 250 GATGATGTGCTTGACGGAATCGAACATTTCTCTGCCATGATGGAAATTTT 299
|||||.|||||||||||||||||||||||.||.||.||||||||.|||||
RBAM_012700__ 250 GATGACGTGCTTGACGGAATCGAACATTTTTCAGCAATGATGGAGATTTT 299
BSNT_02173___ 300 CTCAATTACTTCATCAGACGAGCATATCGATAAATTCAGCGGATACATCA 349
|||.||.|||||.||.||.||||||||||||||.||||||||||||||||
RBAM_012700__ 300 CTCGATCACTTCTTCCGATGAGCATATCGATAAGTTCAGCGGATACATCA 349
BSNT_02173___ 350 GAGAATGCGCGAAAGAGATTTTGATTACGATCGAGCTGCTGGCAGAAAAT 399
||||.||||||||.||.|||||.||.|||||.||||||||.||||||||.
RBAM_012700__ 350 GAGAGTGCGCGAAGGAAATTTTAATCACGATTGAGCTGCTTGCAGAAAAC 399
BSNT_02173___ 400 CGCTTAAAGGATATTCAGCCTCACGCAATCAAAATAAAAGAGTATGAGCA 449
||.||.|||||.|||||.||||||||.||.|||||.||.||.||.|||||
RBAM_012700__ 400 CGATTGAAGGACATTCACCCTCACGCCATTAAAATTAAGGAATACGAGCA 449
BSNT_02173___ 450 CAGCTGTGACAACTTGCACAGAAAATCATTAAAGAATCTTTTCGGAAATG 499
|||||||||.|||.|||||.|.|||||||||||.|||||.|||||.|..|
RBAM_012700__ 450 CAGCTGTGATAACCTGCACCGTAAATCATTAAAAAATCTGTTCGGCACAG 499
BSNT_02173___ 500 AAACAGACCCAATCAAAGTCATTCAATATCGTGAAATTTACGAAACGCTT 549
||||.||.||.||.|||||.|||||.||.||.||.|||||||||||||||
RBAM_012700__ 500 AAACCGATCCGATTAAAGTGATTCAGTACCGCGAGATTTACGAAACGCTT 549
BSNT_02173___ 550 GAAGAAATCGCCGACTCTTGTCAAAGTGTTGCCAATAATCTTGAAACCAT 599
||.|||||.|||||||||||.|||||.|||||||||||.|||||||||||
RBAM_012700__ 550 GAGGAAATTGCCGACTCTTGCCAAAGCGTTGCCAATAACCTTGAAACCAT 599
BSNT_02173___ 600 CATTATGAAAAACGCGTAA 618
.||||||||||||||||||
RBAM_012700__ 600 TATTATGAAAAACGCGTAA 618
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