Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02166 and RBAM_012650

See Amino acid alignment / Visit BSNT_02166 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:50
# Commandline: needle
#    -asequence dna-align/BSNT_02166___xhlB.1.9828.seq
#    -bsequence dna-align/RBAM_012650___xhlB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02166___xhlB-RBAM_012650___xhlB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02166___xhlB-RBAM_012650___xhlB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02166___xhlB
# 2: RBAM_012650___xhlB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 274
# Identity:     201/274 (73.4%)
# Similarity:   201/274 (73.4%)
# Gaps:          20/274 ( 7.3%)
# Score: 726.0
# 
#
#=======================================

BSNT_02166___      1 ATGAA---CACGTTTGACAAGGGCACGGTCATCAGGACGGTGCTTCTTTT     47
                     |||||   |.||   |||||.|||||||||.|||||||||||||||||||
RBAM_012650__      1 ATGAAATTCGCG---GACAAAGGCACGGTCGTCAGGACGGTGCTTCTTTT     47

BSNT_02166___     48 AATTGCTTTAATCAACCAGACCATGCTGATGCTCGGCAAATCACCATTGG     97
                     ..||||||||.|.||.||.||..||||||||.||||||||||.||..||.
RBAM_012650__     48 GCTTGCTTTATTGAATCAAACTTTGCTGATGTTCGGCAAATCGCCGCTGA     97

BSNT_02166___     98 ACATTCAGGAGGAGCAGGTCAATCAGCTCGCTGACGCCCTTTATTCAGCC    147
                     |.|||||||||||.|||||||..|||||.||.||..|.||.|||.|.|||
RBAM_012650__     98 ATATTCAGGAGGACCAGGTCAGCCAGCTTGCAGATACGCTGTATGCCGCC    147

BSNT_02166___    148 GGTT---CCATTGCATTTACAATTGGAACGACACTTGCCGCTTGGTTTAA    194
                     ||.|   ||.||   ||||||||...||||||....|||||.||||||||
RBAM_012650__    148 GGGTCGGCCGTT---TTTACAATCATAACGACTGCCGCCGCCTGGTTTAA    194

BSNT_02166___    195 AAACAACTATATAACAGAAAAAGGGAAAAAACAGCGCGACTTGTTAAGGG    244
                     ||||||.||..|.||||.|||||||||||||||||..|..||.|||    
RBAM_012650__    195 AAACAATTACGTTACAGCAAAAGGGAAAAAACAGCAGGCTTTATTA----    240

BSNT_02166___    245 ACAAT----AATCTGACGAAATAA    264
                     |.|||    |||.|..|||||||.
RBAM_012650__    241 AAAATAAACAATTTATCGAAATAG    264


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