Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02121 and RBAM_012550

See Amino acid alignment / Visit BSNT_02121 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:50
# Commandline: needle
#    -asequence dna-align/BSNT_02121.1.9828.seq
#    -bsequence dna-align/RBAM_012550.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02121-RBAM_012550.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02121-RBAM_012550.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02121
# 2: RBAM_012550
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 185
# Identity:     120/185 (64.9%)
# Similarity:   120/185 (64.9%)
# Gaps:          34/185 (18.4%)
# Score: 383.0
# 
#
#=======================================

BSNT_02121         1 ATGTGCAAGCTTTGTCAAACAAAGAAAGTCATTGT---GGAACATACCGG     47
                     |||||.|||||.||.....|.|||||.||||||||   ||||   ||.||
RBAM_012550        1 ATGTGTAAGCTGTGCGGGCCGAAGAAGGTCATTGTGACGGAA---ACGGG     47

BSNT_02121        48 TATTGGAGTCGTTTTTCATCCATGTCCGAACTGCCGGTCCGGCACTGACT     97
                     |.|.||.|..||.|||||.||.||.|||||||||....|.||||||||.|
RBAM_012550       48 TTTCGGCGCTGTCTTTCACCCTTGCCCGAACTGCAAAACAGGCACTGATT     97

BSNT_02121        98 TAACGCCTGTCATTCAAAAG-CTGGAGCAAATGCT----GACAGCGGGAA    142
                     |||||||.|||||| |||.| ||.||||.||||.|    |||    |.||
RBAM_012550       98 TAACGCCGGTCATT-AAACGTCTTGAGCGAATGGTTCAAGAC----GCAA    142

BSNT_02121       143 AAGCGAGGCTGAATATCTATGAT---------TAA    168
                     ||||||||||         ||||         |||
RBAM_012550      143 AAGCGAGGCT---------TGATGCACGTGTATAA    168


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