Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02113 and RBAM_012490
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:49
# Commandline: needle
# -asequence dna-align/BSNT_02113___yjqB.1.9828.seq
# -bsequence dna-align/RBAM_012490___yjqB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02113___yjqB-RBAM_012490___yjqB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02113___yjqB-RBAM_012490___yjqB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02113___yjqB
# 2: RBAM_012490___yjqB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 619
# Identity: 469/619 (75.8%)
# Similarity: 469/619 (75.8%)
# Gaps: 29/619 ( 4.7%)
# Score: 1772.5
#
#
#=======================================
BSNT_02113___ 1 ATGAAAGATATGTATGACAGCTTTGCAGCCCTTTCTGCTTCTGAGTCGGA 50
||||||||||..|||||||..||.|||||||||||||||.||||.|||||
RBAM_012490__ 1 ATGAAAGATAGATATGACAATTTCGCAGCCCTTTCTGCTGCTGAATCGGA 50
BSNT_02113___ 51 GTACCGGATTATTTATGAGGAGAAAAACGGAAGTGAGCTTATCGTCCTCG 100
.|||.|.|||||||||||.||.|||.|.||||||.|...|||||||||||
RBAM_012490__ 51 ATACAGAATTATTTATGAAGAAAAAGAGGGAAGTAAATGTATCGTCCTCG 100
BSNT_02113___ 101 GTCCCCACGGCGGCAGAATTGAGCCTGGCGTCAGTGAATTGGTGCGGGCA 150
.|||||||||||||||..|||||||.||.||||||||..|||||||||||
RBAM_012490__ 101 CTCCCCACGGCGGCAGGGTTGAGCCGGGTGTCAGTGAGCTGGTGCGGGCA 150
BSNT_02113___ 151 TTTTCGGATCGATGCTCCATCTATTTGTTTGAGGGTGTAAAACAGCGAA- 199
|||||.||.|.|.||||.||.|||||.|||||.|| |.||||
RBAM_012490__ 151 TTTTCTGACCAAAGCTCAATTTATTTATTTGAAGG--------AACGAAG 192
BSNT_02113___ 200 -------ACAATCGTTCCTTGCATCTCACCAGCATTCGTTTTGATGAGCC 242
|.||.|||||..|.|||.|.||.||||..||.|||||.||.||
RBAM_012490__ 193 CGGTGCGATAACCGTTCTCTCCATTTGACAAGCACACGCTTTGACGAACC 242
BSNT_02113___ 243 GCTGGCTTTAGAAAAAGTGAATGCCCACCATTACGCATTAGCGTTTCACG 292
.|||||||||||||||||||..|||||.|||||||||||.||.|||||.|
RBAM_012490__ 243 CCTGGCTTTAGAAAAAGTGACCGCCCATCATTACGCATTGGCTTTTCATG 292
BSNT_02113___ 293 GGTATTATGATCCAAACATCCCGCATACTTTGGTCGGCGGGGCTGATCGA 342
|||||.||||||..||.|...|..||||..|.|||||.||.||.||||..
RBAM_012490__ 293 GGTATCATGATCTGAAAAAGGCAAATACACTCGTCGGGGGCGCGGATCTG 342
BSNT_02113___ 343 AAAAAAGCCAAG-CTCATTTGTGAGCGTCTGAATGAAGCGGGTTTTAGCG 391
.|||||| |||| ||.||||||||.|..|||..|||||||||.|||...|
RBAM_012490__ 343 GAAAAAG-CAAGACTGATTTGTGATCTGCTGCGTGAAGCGGGGTTTGATG 391
BSNT_02113___ 392 CCGAGCTAACTAATGAGAAAGACCGCCTGGCAGGTGTACACCCAAGCAAT 441
|||||||.||..|..||||.||.||.||||||||||||.|.||..||||.
RBAM_012490__ 392 CCGAGCTGACAGAGAAGAATGATCGGCTGGCAGGTGTAAATCCCCGCAAC 441
BSNT_02113___ 442 ATTGTCAATCGGACGAAAAGAGAAATGGGGCTGCAATTGGAGGTGAGCAC 491
||||||||||||||.|||||..|||||||||||||||||||.||||||||
RBAM_012490__ 442 ATTGTCAATCGGACAAAAAGGAAAATGGGGCTGCAATTGGAAGTGAGCAC 491
BSNT_02113___ 492 GGCACAAAGAAACGCGCTGTTCTGCAATTTTGGGTGCC-GTGATAAAAGC 540
|||.||.|||.|||||||||||.||||||||||.|||| |.||.||||
RBAM_012490__ 492 GGCGCAGAGACACGCGCTGTTCAGCAATTTTGGCTGCCGGGGAGAAAA-- 539
BSNT_02113___ 541 TACATA--CAAAACGACTTGTTTGATCGATATGTGGAAGCCGTCAAGCTT 588
|.||| |.||.|||..|||||..|||.|||||.||||||||.|||...
RBAM_012490__ 540 -ATATACGCCAACCGATCTGTTTTTTCGGTATGTAGAAGCCGTGAAGGCC 588
BSNT_02113___ 589 GGCTTTTATACATAA---- 603
||.|||||| .||||
RBAM_012490__ 589 GGTTTTTAT-GATAAATGA 606
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