Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02099 and RBAM_012420

See Amino acid alignment / Visit BSNT_02099 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:49
# Commandline: needle
#    -asequence dna-align/BSNT_02099___uxaA.1.9828.seq
#    -bsequence dna-align/RBAM_012420___uxaA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02099___uxaA-RBAM_012420___uxaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02099___uxaA-RBAM_012420___uxaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02099___uxaA
# 2: RBAM_012420___uxaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1524
# Identity:    1120/1524 (73.5%)
# Similarity:  1120/1524 (73.5%)
# Gaps:          60/1524 ( 3.9%)
# Score: 4004.0
# 
#
#=======================================

BSNT_02099___      1 TTGAA----GTCGTTTATAAAGATTCATAAGCAAGATAATATCCTTCTTG     46
                     .||||    |||    |||||.||.|||||..|.|||||..|.|||||.|
RBAM_012420__      1 ATGAAAGAGGTC----ATAAAAATCCATAAAAACGATAACGTGCTTCTCG     46

BSNT_02099___     47 CTCTGCGGGATATCCA-AAAGGGAGAGAGGCTGCATGCGGACGGCGTGTC     95
                     ||.||||..||.|..| |||||| |||.||||||||.|.|||||..||.|
RBAM_012420__     47 CTATGCGCCATTTTGACAAAGGG-GAGCGGCTGCATACAGACGGACTGAC     95

BSNT_02099___     96 GATTGAAGTAAAGAATGATATAAAAAGAGGCCATAAGATTGCATTGCAGT    145
                     |||||||||.|||.|...|.||||..|.||.|||||.||.||..||||..
RBAM_012420__     96 GATTGAAGTGAAGGACCCTGTAAAGCGGGGGCATAAAATCGCGCTGCAAA    145

BSNT_02099___    146 CTATCAAAGAAAACGACAGCATCATCAAGTACGGGTTTCCAATCGGTCAT    195
                     |.||..|||||||||..||||||||.||.|||||.|||.|||||||.|.|
RBAM_012420__    146 CCATTGAAGAAAACGGTAGCATCATTAAATACGGTTTTTCAATCGGGCGT    195

BSNT_02099___    196 GCATCACAAG--ATATCTCGATCGGAGAGCATATTCATGTCCATAATACG    243
                     ||  .|||||  ..||.|||..|||.||||||||||||..|||||||..|
RBAM_012420__    196 GC--GACAAGGCGGATTTCGGCCGGCGAGCATATTCATACCCATAATCTG    243

BSNT_02099___    244 AAAACAAACCTGTCTGATATCCAATCATACAGCTATACACCGAGATTTGA    293
                     .||||.||..|.||.|||.|.|||..|||||..|||.|||||.|.||.||
RBAM_012420__    244 CAAACGAATTTATCCGATGTGCAAGAATACACGTATTCACCGCGCTTCGA    293

BSNT_02099___    294 TGAAAATCCGTATTCTAATGAGAACCGGACGTTTAAAGGTTTTAGAAGAG    343
                     .||.|||||.|.|.|.||||||||||||||.||||||||.|..|||||||
RBAM_012420__    294 GGACAATCCTTTTACAAATGAGAACCGGACATTTAAAGGCTACAGAAGAG    343

BSNT_02099___    344 AAAACGG-AGATGCGGGTGTACGGAATGAATTGTGGATTGTCCCAACTGT    392
                     ||||||| |.|| |.||.||.|||||||||.|||||||.||.||.||.||
RBAM_012420__    344 AAAACGGTACAT-CCGGCGTCCGGAATGAACTGTGGATCGTACCTACAGT    392

BSNT_02099___    393 CGGCTGTGTCAATGGAATAGCAGAAAAAATGCTGCAGCGTTTTGTCAGAG    442
                     ||||||.||.||.||..|.||.||.|||||.||||||||.||.||.|.||
RBAM_012420__    393 CGGCTGCGTAAACGGCGTCGCTGAGAAAATCCTGCAGCGCTTCGTAAAAG    442

BSNT_02099___    443 AAACAGGG-----GATATCGCTCCATTTGATAACGTACTGGTGTTAAAGC    487
                     |     ||     ||.||.||.||.|||||.||.||.|||||.|||||||
RBAM_012420__    443 A-----GGCGAAAGACATTGCGCCCTTTGACAATGTGCTGGTTTTAAAGC    487

BSNT_02099___    488 ATCAATACGGATGCTCGCAGCTTGGCGATGATCACGAAAATACGAAGCAA    537
                     |.||||||||.|||||.|||||||||||||||||.||.||||||||.|||
RBAM_012420__    488 ACCAATACGGCTGCTCCCAGCTTGGCGATGATCATGAGAATACGAAACAA    537

BSNT_02099___    538 ATCCTGCTGAATGCCATTCGCCATCCAAATGCCGGCGGCGTCTTGGTGTT    587
                     ||.|||.||||.|||||.||.|||||||||||.|||||.||..||||.||
RBAM_012420__    538 ATGCTGATGAACGCCATCCGTCATCCAAATGCTGGCGGTGTGCTGGTTTT    587

BSNT_02099___    588 AGGGCTTGGCTGTGAAAACAATGAGCTGGCAAGAATGAAGGAAGCACTGC    637
                     ||||||.|||||||||||.|||||||||||....||.||||||.|.||..
RBAM_012420__    588 AGGGCTCGGCTGTGAAAATAATGAGCTGGCGGCGATTAAGGAAACGCTTT    637

BSNT_02099___    638 AAGATGTGAACCTGGAG--CGGGTGAAGTTTCTGGAATCCCAGTCGGTGA    685
                     ..||.||||||  ||||  ||||||||.|||||.|||||.||..|.||.|
RBAM_012420__    638 CTGAAGTGAAC--GGAGATCGGGTGAAATTTCTCGAATCACAAGCTGTCA    685

BSNT_02099___    686 CCGACGAAATGGAGGCAGGTGTTGCTTTGCTGAAGGAAATTCATGAAGCG    735
                     |.||.|||||.||.||.||...|||..|.||.||.||.||.||....|||
RBAM_012420__    686 CAGATGAAATTGAAGCGGGGACTGCGCTTCTTAAAGAGATACACCTTGCG    735

BSNT_02099___    736 GCCAAAGGAGATAAGAGAGAAGACATTCCGCTGTCTGAACTGAAGATCGG    785
                     ||.||.||||||||..|.||.||.|||||||||||.|||.|||..|||||
RBAM_012420__    736 GCAAAGGGAGATAAACGTGAGGAGATTCCGCTGTCAGAATTGAGCATCGG    785

BSNT_02099___    786 GCTGAAATGCGGAGGTTCGGACGGTTTTTCCGGCATAACCGCAAACCCGC    835
                     ..||||||||||.||.||||||||||||||||||||.|||||||||||..
RBAM_012420__    786 ATTGAAATGCGGCGGGTCGGACGGTTTTTCCGGCATCACCGCAAACCCTT    835

BSNT_02099___    836 TGCTTGGACGTTTTTCAGATTATCTCATTGCACAGGGAGGGAGCACGGTG    885
                     |..|.||..|.|||||||||||..|.|||||||||||||||||||||||.
RBAM_012420__    836 TATTAGGGAGATTTTCAGATTACTTGATTGCACAGGGAGGGAGCACGGTC    885

BSNT_02099___    886 CTGACGGAAGTACCGGAAATGTTCGGCGCAGAAACCATCCTGATGCAGCG    935
                     .|.|||||.||.||.||.|||||||||||.||.||.||.||.||||||||
RBAM_012420__    886 TTAACGGAGGTGCCTGAGATGTTCGGCGCTGAGACGATTCTCATGCAGCG    935

BSNT_02099___    936 GGCTGCCAATGAAGAAGTGTTTCATAAGATAGT-CGATTTAATCAATGAT    984
                     .||.||.|.||||||||||||||||||.|.||| ||| ||.|||||||||
RBAM_012420__    936 TGCGGCGAGTGAAGAAGTGTTTCATAAAACAGTCCGA-TTGATCAATGAT    984

BSNT_02099___    985 TTCAAACAATACTTTATTAAACATGATCAGCCGGTGTACGAAAATCCCTC   1034
                     |||||.|||||.|||||.||.||.||.||||||.|.||.|||||.||.||
RBAM_012420__    985 TTCAAGCAATATTTTATGAAGCACGAGCAGCCGATTTATGAAAACCCGTC   1034

BSNT_02099___   1035 ACCGGGCAACAAAGCGGGCGGCATTTCTACACTTGAGGATAAATCGCTGG   1084
                     |||.||.||.||.|..|||||||||||.||.||.||.||.||.|||||.|
RBAM_012420__   1035 ACCAGGGAATAAGGAAGGCGGCATTTCAACGCTCGAAGACAAGTCGCTCG   1084

BSNT_02099___   1085 GCTGTACGCAAAAAGCGGGGATTTCTCCTGTCACGGATGTCTTGAAATAC   1134
                     ||||.||.||||||||.||..||.|.||.||..|.|||||..|||.||||
RBAM_012420__   1085 GCTGCACCCAAAAAGCCGGTCTTGCACCGGTTTCTGATGTGCTGACATAC   1134

BSNT_02099___   1135 GGGGAAGTGCTCAAGACAAGAGGG-CTGACGCTTTTGAGCGCGCCAGGCA   1183
                     ||.|||...||.||.|||| |||| .||||.||..|.||.|||||.||||
RBAM_012420__   1135 GGTGAAACACTGAAAACAA-AGGGATTGACACTGCTCAGTGCGCCCGGCA   1183

BSNT_02099___   1184 ATGATTTGATCGCCTCCTCCGCATTGGCGGCGGCCGGCTGCCAAATTGTC   1233
                     |||||||.|||||.||.||.||..|.||.|||||.||.||.||.||.||.
RBAM_012420__   1184 ATGATTTAATCGCTTCTTCAGCGCTCGCCGCGGCGGGTTGTCACATCGTT   1233

BSNT_02099___   1234 CTCTTTACAACGGGGAGAGGCACGCCGTTTGGCAGCTTTGTCCCGACGGT   1283
                     .|.||||||||.||.||||||||||||||.||||..|||||||||||.||
RBAM_012420__   1234 TTGTTTACAACCGGAAGAGGCACGCCGTTCGGCACATTTGTCCCGACTGT   1283

BSNT_02099___   1284 GAAAGTAGCGACAAACACCGAGCTGTATGAAGCGAAGCCGCATTGGATTG   1333
                     |||||||.|.|||||.|||||..|.|.|.||.|.|||||.||||||||||
RBAM_012420__   1284 GAAAGTATCAACAAATACCGATTTATTTCAATCAAAGCCTCATTGGATTG   1333

BSNT_02099___   1334 ATTTTAACGCAGGCCTTTTAGCAGAGGA---------TGATGTTCA---T   1371
                     |||..|||||.|||...||.||.||.||         .||.|.|||   |
RBAM_012420__   1334 ATTACAACGCGGGCAGATTGGCGGAAGACCAAACAACAGAAGATCACATT   1383

BSNT_02099___   1372 G-AGGAATATGTGCTGCGTGAGTTTATCCACTATATGGTTGAGGTGGCAA   1420
                     | |.||             ||.|||||.||.||.||..||.|.||.||||
RBAM_012420__   1384 GTAAGA-------------GATTTTATACAATACATTATTAAAGTTGCAA   1420

BSNT_02099___   1421 GCGGCCAGCTTGTGAACCATGAAAAAAATGATTTCAGAGAACTCGCCATT   1470
                     ||||..|..|.||.||..|.||||||||.|||||..|.||.||.||.||.
RBAM_012420__   1421 GCGGAGAATTCGTCAATAACGAAAAAAACGATTTTCGGGAGCTTGCAATC   1470

BSNT_02099___   1471 TTTAAATCGGGTGTGACGCTATAA   1494
                     |||||.||.|||||||||.|||||
RBAM_012420__   1471 TTTAAGTCCGGTGTGACGTTATAA   1494


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