Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01964 and RBAM_011770
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:43
# Commandline: needle
# -asequence dna-align/BSNT_01964___cotX.1.9828.seq
# -bsequence dna-align/RBAM_011770___cotX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01964___cotX-RBAM_011770___cotX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01964___cotX-RBAM_011770___cotX.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01964___cotX
# 2: RBAM_011770___cotX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 569
# Identity: 313/569 (55.0%)
# Similarity: 313/569 (55.0%)
# Gaps: 154/569 (27.1%)
# Score: 861.5
#
#
#=======================================
BSNT_01964___ 1 ATGGAATCAAGACCTTACTCATGGGTTGCCCTAGATAATTCATGTACACA 50
||||||...|||||.|||||.||||||||.||.|||..|..||||..|||
RBAM_011770__ 1 ATGGAAAGCAGACCATACTCTTGGGTTGCACTTGATCCTGAATGTGAACA 50
BSNT_01964___ 51 CCCGGGTAGCGGCTATAAAAG--------------AGAAGCGGTTTGTCA 86
.|||.| ||..|..|.|.||| |||.||.||
RBAM_011770__ 51 TCCGCG-AGAAGAAAAAGAAGAAAAAGAAGGAAGAAGATGCAGT------ 93
BSNT_01964___ 87 TGACGTTTGTTCT---GGA---------GGAGAAGATGCTAACGCATT-- 122
|||||.|.| ||| ||.||||| |||.||.||
RBAM_011770__ 94 ----GTTTGCTGTAACGGACACGGGTTCGGCGAAGA---TAATGCCTTCA 136
BSNT_01964___ 123 ----TCAAGATTTTGATCA-GCTAAGCCTTAACAAACAAACATCTGAAGA 167
.|||||..|.|..|| ||.|| .||.|||||||||...||||||||
RBAM_011770__ 137 TCGACCAAGACCTGGCACAGGCGAA-TCTCAACAAACAAGTTTCTGAAGA 185
BSNT_01964___ 168 AATGATTATCGTTAGAGATTCTTGCGACATTGATGTTACGTCTACTGACA 217
|..||||||..|.|||||||||||.||.|||.|.||.||.||.||.||
RBAM_011770__ 186 AGCGATTATTATCAGAGATTCTTGTGATATTAACGTGACATCGACAGA-- 233
BSNT_01964___ 218 CTCAAGTTGCTGCATCCATTCAAGCCGCCCTCCAAACTGCTGTCATTACA 267
.|||||.||.|.| |||.|.|||||.|||
RBAM_011770__ 234 ----------------TATTCAGGCAGTC------ACTTCAGTCATGACA 261
BSNT_01964___ 268 ---ATT------------GTAA-----------ACTTATCAATAGCAGAC 291
||| |||| ||| |||||.||.|||
RBAM_011770__ 262 GCGATTAATGCAGCAGTCGTAACGGCCACTCTCACT--TCAATCGCTGAC 309
BSNT_01964___ 292 GGTGATTTAGCAGATCAAGTCATC---------------CAAGACTTAGT 326
|| ||||||| |||||||||.|
RBAM_011770__ 310 GG---------------AGTCATCGCTGAATTGGTCGCACAAGACTTATT 344
BSNT_01964___ 327 GCAACAATCTGTTAACAAGC-AGTCAAACCGTCAAAAACTAGTGATTGAA 375
|||.|.|.|.|.||||||.| |.|| ||||||||||||||..|.||.|||
RBAM_011770__ 345 GCAGCTAACAGCTAACAAACAAATC-AACCGTCAAAAACTGCTCATCGAA 393
BSNT_01964___ 376 AACTCTAGAAATGTTAATGTCACAACAACCGATACAGATATTGCACTATC 425
|||||..|....||.||.||.||||||...|||.|.|||||.|||..||.
RBAM_011770__ 394 AACTCCCGCGGCGTAAACGTGACAACAGTAGATGCCGATATCGCAACATT 443
BSNT_01964___ 426 GATCCAAACACTGACACAGACAC---TTGCCGCTACAATTATCGCAGT-- 470
||||..||||...|||.|.|||| ||||| |||..|||
RBAM_011770__ 444 GATCTCAACAGCAACAAATACACTGATTGCC---------ATCTTAGTCA 484
BSNT_01964___ 471 ------TGGAATCCTCTAA 483
|.| ||||||||
RBAM_011770__ 485 TCACCCTCG--TCCTCTAA 501
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