Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01950 and RBAM_011680

See Amino acid alignment / Visit BSNT_01950 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:42
# Commandline: needle
#    -asequence dna-align/BSNT_01950___goxB.1.9828.seq
#    -bsequence dna-align/RBAM_011680___goxB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01950___goxB-RBAM_011680___goxB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01950___goxB-RBAM_011680___goxB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01950___goxB
# 2: RBAM_011680___goxB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1149
# Identity:     797/1149 (69.4%)
# Similarity:   797/1149 (69.4%)
# Gaps:          78/1149 ( 6.8%)
# Score: 2641.0
# 
#
#=======================================

BSNT_01950___      1 ATGAAAAGGCATTATGAAGCAGTGGTGATTGGAGGCGGAATGATCGGTTC     50
                     |||||.|.|||.|||||..|||.||||||.||.||||||||.|||||.|.
RBAM_011680__      1 ATGAAGAAGCACTATGATACAGCGGTGATCGGCGGCGGAATTATCGGGTG     50

BSNT_01950___     51 CGCGATTGCTTATTATTTGGCAAAGGAAAACAAAAGCACCGCA-------     93
                     |||.|||.|||||.|..||||.|||          .|||.|||       
RBAM_011680__     51 CGCCATTTCTTATGAGCTGGCGAAG----------ACACAGCAGAAGGTT     90

BSNT_01950___     94 ---TTGTTTGAAAGCGGAACAATGGGCGGCAGAACGACAAGTGCCGCTGC    140
                        |||.|||||..||||..|.|.|||.|.|.|||||||||.||.||.||
RBAM_011680__     91 GTCTTGCTTGAAGCCGGAGAAGTCGGCCGAAAAACGACAAGCGCTGCCGC    140

BSNT_01950___    141 CGGAATGCTGGGCGCCCATGCCGAATGCGAAGAACGTGACGCGTTTTTTG    190
                     .||||||||||||||.|||||.|||||.|||.|.||.||.||||||||||
RBAM_011680__    141 GGGAATGCTGGGCGCTCATGCGGAATGTGAAAACCGGGATGCGTTTTTTG    190

BSNT_01950___    191 ATTTCGCCATGCACAGTCAGCGTCTGTACAAA------GGTCTTGGAGAA    234
                     ||||.||||||||||||||..|.|||||..||      ||.|      ||
RBAM_011680__    191 ATTTTGCCATGCACAGTCAAAGGCTGTATGAACCGGCGGGGC------AA    234

BSNT_01950___    235 GAGCTTTATGCATTATCCGGTGTGGATATCAGGCAGCATAACGGCGGTAT    284
                     ||||||.|.|.|...|.|||..|.||.|||||||..|||||||||||.||
RBAM_011680__    235 GAGCTTGAGGAAGCTTGCGGCATTGACATCAGGCGCCATAACGGCGGAAT    284

BSNT_01950___    285 GTTTAAGCTTGCATTTTCTGAAGAAGATGT--GCTG-CAGCTGAGACAGA    331
                     |.||||.||.||.|.|.|.|||||||||.|  .||| |..|.||   |||
RBAM_011680__    285 GCTTAAACTGGCGTATACCGAAGAAGATATCGCCTGTCTACGGA---AGA    331

BSNT_01950___    332 TGGACGATTTGGACTCTGTCAGCTGGTATTCAAAAGAAGAGGTGTTAGAA    381
                     ||||.|||.||...||.||||.||||..||||...|||||.|...|.|||
RBAM_011680__    332 TGGATGATCTGCCTTCCGTCACCTGGCTTTCAGCGGAAGATGCCCTTGAA    381

BSNT_01950___    382 AAAGAGCCGTATGCGTCTGGTGACATCTTTGGTGCATCTTTTATTCAGGA    431
                     ||||||||.||.||.||....|||||..|.||.|||..||||||..|.||
RBAM_011680__    382 AAAGAGCCTTACGCTTCAAAAGACATTCTCGGCGCAAGTTTTATAAAAGA    431

BSNT_01950___    432 TGATGTGCATGTGGAGCCTTATTTTGTTTGCAAGGCATATGTGAAAGCAG    481
                     .|||||.|||||.||.||.||.|.|||.|||||.||.||||..||||.||
RBAM_011680__    432 CGATGTCCATGTCGAACCGTACTATGTCTGCAAAGCGTATGCAAAAGGAG    481

BSNT_01950___    482 CAAAAATGC------TTGGGGCGGAGATTTTTGAGCATACGCCTGT--CC    523
                     |      ||      .|||.||.||.||.|.|||||||||.|..||  ||
RBAM_011680__    482 C------GCGGCGCTATGGCGCTGATATATATGAGCATACACAAGTCACC    525

BSNT_01950___    524 TGCATGTCGAACG--TG-ACGGTGAAGCCCT-GTCCATCAAGACCCCTAG    569
                     |.|  ||..||||  || ||||.|||    | .|.|||||..||..|..|
RBAM_011680__    526 TCC--GTAAAACGGATGAACGGAGAA----TATTGCATCACAACGTCCGG    569

BSNT_01950___    570 CGGAGACGTATGGGCTAATCATGTTGTCGTTGCCAGCGGGGTGTGGAGCG    619
                     |||.||.||.|..|||.|..|.||.|..|||||.|||||.||.|||||||
RBAM_011680__    570 CGGGGATGTTTATGCTGACAAAGTCGCAGTTGCAAGCGGTGTATGGAGCG    619

BSNT_01950___    620 GAATGTTTTTTAAACAGCTTGGACT--GAACAATG-CTTTTCTCCCTGTA    666
                     |...||||||.|..|||||.|| ||  |.|||  | |||||.|.|||||.
RBAM_011680__    620 GCCGGTTTTTCAGCCAGCTCGG-CTTGGGACA--GCCTTTTTTTCCTGTG    666

BSNT_01950___    667 AAAGGGGAGTGCCTGTCCGTTTGGAATGATGATATCCCGCTGACAAAAAC    716
                     |||||.||.|||||.|||||.||||||||.||||.|||||||||.|||||
RBAM_011680__    667 AAAGGAGAATGCCTTTCCGTGTGGAATGACGATACCCCGCTGACCAAAAC    716

BSNT_01950___    717 GCTTTACCATGATCACTGCTATATCGTACCGAGAAAAAGCGGCAAACTGG    766
                     .|||||.||||||||.||.|||.||||.|||||||||||||||...||.|
RBAM_011680__    717 CCTTTATCATGATCATTGTTATGTCGTCCCGAGAAAAAGCGGCCGGCTTG    766

BSNT_01950___    767 TTGTCGGCGCGACAATGAAGCTGGGAGACTGGAGTGAAACACCGGATCTT    816
                     |..|||||||.||.|||||.|..||.||||||||.||.||.||.||..|.
RBAM_011680__    767 TCATCGGCGCAACGATGAAACACGGCGACTGGAGCGATACGCCTGACATC    816

BSNT_01950___    817 GGCGGATTGGAATCGGTTATGAAAAAAGCAAAAACGATGCTGCCGGCTAT    866
                     ||.|||.|.||..|.||.||...||||||.|||||.|||||.||.||.||
RBAM_011680__    817 GGAGGAATTGAGGCCGTCATTGGAAAAGCGAAAACCATGCTTCCTGCCAT    866

BSNT_01950___    867 ACAGAATATGAAGGTGGATCGTTTTTGGGCGGGACTCCGGCCGGGAACAA    916
                     ..|..|||||||..|.||.||.|||||||||||||||.||||||||||||
RBAM_011680__    867 CGAACATATGAAAATAGACCGGTTTTGGGCGGGACTCAGGCCGGGAACAA    916

BSNT_01950___    917 AGGATGGAAAACCGTACATCGGCAGACATCCTGAGGACAGCCGTATTTTA    966
                     ..||.|||||.||||..|||||..|.||||||||.||||||.|.||..|.
RBAM_011680__    917 GAGACGGAAAGCCGTTTATCGGGCGGCATCCTGAAGACAGCGGCATCATC    966

BSNT_01950___    967 TTTGCGGCGGGCCATTTCAGAAATGGGATCCTGCTTGCTCCCGCAACAGG   1016
                     ||.||.||.||||||||..|.||.||.||||||.|.||.||.||||| ||
RBAM_011680__    967 TTCGCCGCCGGCCATTTTCGGAACGGCATCCTGTTGGCGCCGGCAAC-GG   1015

BSNT_01950___   1017 CGCTTTGA-----TCAGTGATCTCATCATGAATAAAGAGGTCAACCAAGA   1061
                     |    |||     |..|.|||.|.|||.||.|.|.|.||.|.||.||.||
RBAM_011680__   1016 C----TGAAATGGTGCGGGATATGATCCTGGAAAGACAGATTAAACAGGA   1061

BSNT_01950___   1062 CTGGCTGCACGCATTCCGAATTGATCGCAAGGAGGCGGTTCAGATATGA   1110
                     .|||....|.||.||.||||||||||||||||||||.|||||.||||||
RBAM_011680__   1062 ATGGGAAGAAGCGTTTCGAATTGATCGCAAGGAGGCTGTTCATATATGA   1110


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