Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01946 and RBAM_011650
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:42
# Commandline: needle
# -asequence dna-align/BSNT_01946___yjbQ.1.9828.seq
# -bsequence dna-align/RBAM_011650___yjbQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01946___yjbQ-RBAM_011650___yjbQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01946___yjbQ-RBAM_011650___yjbQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01946___yjbQ
# 2: RBAM_011650___yjbQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1867
# Identity: 1429/1867 (76.5%)
# Similarity: 1429/1867 (76.5%)
# Gaps: 44/1867 ( 2.4%)
# Score: 5358.5
#
#
#=======================================
BSNT_01946___ 1 ATGGCGCATACATCTGTCGAATCTTTAGTTGTTGTACTTATCGTTGCATT 50
||||..||.|||||.||||.|||||||||.||.||.||.|||||.||.||
RBAM_011650__ 1 ATGGAACACACATCAGTCGCATCTTTAGTCGTCGTTCTGATCGTCGCTTT 50
BSNT_01946___ 51 TTTGACACCCATCCTTTTGCATCGGTTTAAACTCAGCATCCCGGTTGTTG 100
||||||.||..|||||||.|||||||||||.|||||||||||.||.||.|
RBAM_011650__ 51 TTTGACGCCGCTCCTTTTACATCGGTTTAAGCTCAGCATCCCCGTCGTCG 100
BSNT_01946___ 101 TTGCTGAAATCATTATGGGGCTGATAATTGGGAAAAGCGGCCTTAATTTA 150
|.||.||.|||||.||||||||.||.||.||.|||||||||||.|||.|.
RBAM_011650__ 101 TCGCGGAGATCATCATGGGGCTTATTATCGGAAAAAGCGGCCTGAATCTT 150
BSNT_01946___ 151 GTTGTGGAGGGTGACACCTGGCTCCAGACACTCTCTATGCTCGGATTTAT 200
||.||..||||.|||||.|||||..||||.||.|||.|.|||||.|||||
RBAM_011650__ 151 GTCGTTCAGGGAGACACGTGGCTGGAGACGCTGTCTGTTCTCGGCTTTAT 200
BSNT_01946___ 201 CTTTTTAATGTTTTTAAGCGGGCTT-GAAATTGATTTTTCGTCGTTTGAG 249
||||||||||||||||||| ||||| ||||||||||||||.||.||||||
RBAM_011650__ 201 CTTTTTAATGTTTTTAAGC-GGCTTGGAAATTGATTTTTCTTCATTTGAG 249
BSNT_01946___ 250 AAAGGAAAGAAAAAGCAGTTCCTGCCGAATGGCAAGGAAGCGCCGAATAC 299
|||||.||||||||.||.|||||.||||||||||||||||||||.||.||
RBAM_011650__ 250 AAAGGGAAGAAAAAACAATTCCTTCCGAATGGCAAGGAAGCGCCCAACAC 299
BSNT_01946___ 300 GTTTGCTGCGGCATCTG-TTATTTTCGTCGGTATTTTTATTTTATCATTG 348
||||.||||.||| ||| ||||.||..||||.||.|||||||||||||||
RBAM_011650__ 300 GTTTTCTGCCGCA-CTGATTATCTTTTTCGGCATCTTTATTTTATCATTG 348
BSNT_01946___ 349 CTCTTGTCCTATGGGTTCGTCTTGGCCGGATTTATCCAAAATGCATTTTT 398
||..|||||||||..||.||.||.|||||.|||||.|||||.||||||||
RBAM_011650__ 349 CTGCTGTCCTATGCCTTTGTATTAGCCGGTTTTATTCAAAACGCATTTTT 398
BSNT_01946___ 399 GATGACCCTGATTATTTCAACGATTTCATTAGGCGTTGTCGTTCCAACAT 448
.|||||.||.||||||||.|||||.|||.|.||.||.||.||.||.||.|
RBAM_011650__ 399 AATGACGCTTATTATTTCGACGATATCACTCGGTGTGGTGGTCCCGACTT 448
BSNT_01946___ 449 TAAAAGAAGAACGGATCATGAATTCGAATATCGGGCAGATTATTTTGCTT 498
||||.|||||||||||||||||.||.||||||||.|||||.||..|||||
RBAM_011650__ 449 TAAAGGAAGAACGGATCATGAACTCCAATATCGGCCAGATCATCCTGCTT 498
BSNT_01946___ 499 GTTGCTGTTATTGCTGATTTGGCCACGATGATTCTTCTTGCTGTTTTTTC 548
||.||.|||||.||.||.|||||.|||||||||||.||.|||.|.||.||
RBAM_011650__ 499 GTCGCCGTTATCGCGGACTTGGCTACGATGATTCTGCTCGCTTTCTTCTC 548
BSNT_01946___ 549 TTCTTTATACGGAGAGGACAGCGGAAACATGTGGCTCCTGATGATTCTGT 598
||||.|.||||||||.|||||||||||.||||||||.|||.|||||||.|
RBAM_011650__ 549 TTCTCTTTACGGAGAAGACAGCGGAAATATGTGGCTTCTGTTGATTCTCT 598
BSNT_01946___ 599 TTGCGGCCGGAGTGGTGCTTTACTTTTTCGGCCGGGTCTTCAAACATCGC 648
||||.||.||.||.|||||.||.||.||||||.||.||||.|||||.||.
RBAM_011650__ 599 TTGCCGCGGGGGTCGTGCTGTATTTCTTCGGCAGGATCTTTAAACACCGT 648
BSNT_01946___ 649 TCTTTTGTTCAATCCATGTCAAAAGGGACGATCCAGATCGGGACGCGTGC 698
||.|||||.||.||.|||||.|||||.||..|.||||||||.|||.|.||
RBAM_011650__ 649 TCATTTGTGCAGTCGATGTCCAAAGGCACCGTGCAGATCGGCACGAGAGC 698
BSNT_01946___ 699 CATTTTTACGTTAATTATTGTACTCGTTGCCCTGTCTGAATCACTTGGGG 748
||||||.||..|.|||||.||.||.||.||..|.||.|||||.||.||||
RBAM_011650__ 699 CATTTTCACACTGATTATCGTGCTTGTCGCTTTATCGGAATCTCTCGGGG 748
BSNT_01946___ 749 CGGAAAATATTCTCGGCGCTTTCTTAGCGGGGGTTCTTGTTTCCCTGCTT 798
|||||||||||||||||||.||.||.||.||.|||||.||.||.||.||.
RBAM_011650__ 749 CGGAAAATATTCTCGGCGCGTTTTTGGCAGGCGTTCTGGTATCGCTTCTG 798
BSNT_01946___ 799 TCGCCAAACAAAGAACTTGTTCAGCAGCTGGACTCATTCGGTTATGGGTT 848
||.||.||.||||||.|.||..|.||||||||.||.|||||.||.|||||
RBAM_011650__ 799 TCTCCGAATAAAGAAATGGTGGAACAGCTGGATTCCTTCGGCTACGGGTT 848
BSNT_01946___ 849 CTTAATACCGATTTTCTTCGTGATGGTCGGTGTGAAGCTTGATATTTGGA 898
.|||||.|||||.||.|||||.||||||||.|||||..|.||.|||||||
RBAM_011650__ 849 TTTAATTCCGATCTTTTTCGTCATGGTCGGGGTGAAATTGGACATTTGGA 898
BSNT_01946___ 899 CTCTTTTCCAGGAT---AAAACAATTTTAATCATGATTCCGCTCCTGCTG 945
|.||.|||||.||| |||||| ||||..|||||||||||.||.|||
RBAM_011650__ 899 CGCTCTTCCAAGATCCGAAAACA---TTAACGATGATTCCGCTGCTTCTG 945
BSNT_01946___ 946 CTGGCGCTGTTAGTCAGCAAAATCATTCCTGTCATGTACTTAAAGAAGTG 995
||.||||||||..||||||||||..|.||.||..|.||.||||||||.||
RBAM_011650__ 946 CTTGCGCTGTTTATCAGCAAAATGTTCCCGGTGTTTTATTTAAAGAAATG 995
BSNT_01946___ 996 GTATGATAACCGAACCATTTTCGCGTCTGGTTTCCTGCTGACATCAACGC 1045
||||||.||..|||||.|.||.||.||.||.||..|||||||.||.||||
RBAM_011650__ 996 GTATGACAAAAGAACCGTGTTTGCTTCGGGCTTTTTGCTGACGTCCACGC 1045
BSNT_01946___ 1046 TTTCGCTCGTGATTGCCGCTGCAACAATCGGCCAGCA--GCTTCACGTGA 1093
|.|||||.||.||.||.||.||.||.||||| ||.| |||.|||.|.|
RBAM_011650__ 1046 TGTCGCTTGTTATCGCGGCGGCTACGATCGG--AGAAAGGCTCCACATTA 1093
BSNT_01946___ 1094 TCAGTGCAAATATGTCAGGAGCGCTAATTTTAGTAGCCGTCATTGCAAGT 1143
||.|.||.||||||||.||.|||||.|.||||||.||.||.|||||.||.
RBAM_011650__ 1094 TCGGCGCCAATATGTCCGGCGCGCTGACTTTAGTTGCGGTTATTGCCAGC 1143
BSNT_01946___ 1144 ATTTTTACGCCGATCTGTTTTAAAAAATTATACAAACGG-GAAGAGCAGC 1192
||..|.|||||||||.|.|||||.||||||||||||||| .|||.|| ||
RBAM_011650__ 1144 ATCATCACGCCGATCGGCTTTAAGAAATTATACAAACGGCAAAGTGC-GC 1192
BSNT_01946___ 1193 CGGAGGAGAAAAAGACG-ATTACGTTCATTGGCGCCAATCAAATGACTTT 1241
||.||||.|||||| || |||||.||.||.||||||||.||||||||..|
RBAM_011650__ 1193 CGCAGGAAAAAAAG-CGCATTACATTTATCGGCGCCAACCAAATGACACT 1241
BSNT_01946___ 1242 GCCTGTTACACTTGAATTGCCAGAGGAAGAGTATGACGTGCGTGTTGTAC 1291
.||.|||||.||.||||||||.||.||.||.|||||.||.||.||.||.|
RBAM_011650__ 1242 TCCGGTTACGCTGGAATTGCCCGATGAGGAATATGAAGTACGGGTCGTCC 1291
BSNT_01946___ 1292 ACGTCTACCAAGAGAATGCGGAGGAAAAGCTGTCAGAATCAGTGTTTGCT 1341
|.||.||.||.||.|||||.|.|||||.|||..|.|||||.||.|||.|.
RBAM_011650__ 1292 ATGTGTATCAGGAAAATGCCGGGGAAACGCTTGCGGAATCCGTTTTTTCG 1341
BSNT_01946___ 1342 GTTGAAACAATTTCTGACTATGAATACGAGACGCTTGAATCACTCGGCAT 1391
|||||.||.||||||||.||.||...||..||||||||.||.|.|||.||
RBAM_011650__ 1342 GTTGACACGATTTCTGATTACGAGCCCGGCACGCTTGAGTCGCACGGTAT 1391
BSNT_01946___ 1392 TTTTGAAACGGATATCCTCGTTGTGGCGACAGGAAATGAAGATATGAATG 1441
|||..||||||||||.||.||.||||||||.||||||||||||.||||.|
RBAM_011650__ 1392 TTTCAAAACGGATATTCTTGTCGTGGCGACGGGAAATGAAGATGTGAACG 1441
BSNT_01946___ 1442 CACACATTGCATTACTTGCAAAAGAAAAAGGCACAGAAAGAGTCATTGCA 1491
|..|.||.||.|||.|.||.|||||.|||||.||.||..|..||||.|||
RBAM_011650__ 1442 CCGAAATCGCCTTAATAGCGAAAGAGAAAGGGACTGAGCGTATCATCGCA 1491
BSNT_01946___ 1492 AGCGTAGGATCACCGGAGCATGAAGCAGCTCTGAAGGAGCAGGGAATCAG 1541
|||||.||.||....|||||||||.||...|||||.||..||||.|||||
RBAM_011650__ 1492 AGCGTCGGCTCGGTTGAGCATGAAACAAAACTGAAAGAAGAGGGCATCAG 1541
BSNT_01946___ 1542 CATCTTTTCTATTCTGCTGTCGACAAAAACGCTGCTT-CGCGCACTGATA 1590
.||.||||||||.||.|||||.|||||.||||| ||| ||||||.|.||.
RBAM_011650__ 1542 TATTTTTTCTATCCTTCTGTCTACAAAGACGCT-CTTGCGCGCATTAATT 1590
BSNT_01946___ 1591 GAAGCGCCTGGCGTCATGAAGCTGCTCACGAACCAAGAGTCTTCGCTGTA 1640
||.|||||.|||||.||||..||.||.|||||..|.|||||||||.|.||
RBAM_011650__ 1591 GAGGCGCCGGGCGTGATGAGCCTCCTGACGAATGAGGAGTCTTCGTTATA 1640
BSNT_01946___ 1641 TCAAATTAATATGGAGAACAGTAAA-------TATGATGGTGTCATTTTA 1683
|||.||.|||.|||| ||| |||.|.||..|||||.|.
RBAM_011650__ 1641 TCAGATCAATCTGGA-------AAACCCGGCGTATAACGGCATCATTCTG 1683
BSNT_01946___ 1684 CGGGAATTCCCTTTAACAGGTGACGTCATCTTTGTCAGGATTTTCAGAGG 1733
||||||||.||..|.|..||.||.||.||.||.|||.|||||||||||||
RBAM_011650__ 1684 CGGGAATTTCCGCTGATGGGCGATGTGATTTTCGTCCGGATTTTCAGAGG 1733
BSNT_01946___ 1734 TGTGGACAGCATCGTTCCTCATGGGGATACTAGGCTGAAACTGGGAGATC 1783
||||||||||||||||||.||.||.||.||..||||||||...|||||.|
RBAM_011650__ 1734 TGTGGACAGCATCGTTCCGCACGGAGACACGCGGCTGAAAACAGGAGACC 1783
BSNT_01946___ 1784 GCTTAATTGTCACCGGATCTCGGGGGTACGTAACGGATCTTAAGAAAACA 1833
|..|.||.|||||.||.||.||....|||||..||||.| |.|||||| |
RBAM_011650__ 1784 GTCTCATCGTCACGGGCTCGCGCAACTACGTGTCGGAAC-TGAGAAAA-A 1831
BSNT_01946___ 1834 T--TGGAAG---GATAA 1845
| |.|||| ||
RBAM_011650__ 1832 TCCTTGAAGCTTGA--- 1845
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