Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01946 and RBAM_011650

See Amino acid alignment / Visit BSNT_01946 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:42
# Commandline: needle
#    -asequence dna-align/BSNT_01946___yjbQ.1.9828.seq
#    -bsequence dna-align/RBAM_011650___yjbQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01946___yjbQ-RBAM_011650___yjbQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01946___yjbQ-RBAM_011650___yjbQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01946___yjbQ
# 2: RBAM_011650___yjbQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1867
# Identity:    1429/1867 (76.5%)
# Similarity:  1429/1867 (76.5%)
# Gaps:          44/1867 ( 2.4%)
# Score: 5358.5
# 
#
#=======================================

BSNT_01946___      1 ATGGCGCATACATCTGTCGAATCTTTAGTTGTTGTACTTATCGTTGCATT     50
                     ||||..||.|||||.||||.|||||||||.||.||.||.|||||.||.||
RBAM_011650__      1 ATGGAACACACATCAGTCGCATCTTTAGTCGTCGTTCTGATCGTCGCTTT     50

BSNT_01946___     51 TTTGACACCCATCCTTTTGCATCGGTTTAAACTCAGCATCCCGGTTGTTG    100
                     ||||||.||..|||||||.|||||||||||.|||||||||||.||.||.|
RBAM_011650__     51 TTTGACGCCGCTCCTTTTACATCGGTTTAAGCTCAGCATCCCCGTCGTCG    100

BSNT_01946___    101 TTGCTGAAATCATTATGGGGCTGATAATTGGGAAAAGCGGCCTTAATTTA    150
                     |.||.||.|||||.||||||||.||.||.||.|||||||||||.|||.|.
RBAM_011650__    101 TCGCGGAGATCATCATGGGGCTTATTATCGGAAAAAGCGGCCTGAATCTT    150

BSNT_01946___    151 GTTGTGGAGGGTGACACCTGGCTCCAGACACTCTCTATGCTCGGATTTAT    200
                     ||.||..||||.|||||.|||||..||||.||.|||.|.|||||.|||||
RBAM_011650__    151 GTCGTTCAGGGAGACACGTGGCTGGAGACGCTGTCTGTTCTCGGCTTTAT    200

BSNT_01946___    201 CTTTTTAATGTTTTTAAGCGGGCTT-GAAATTGATTTTTCGTCGTTTGAG    249
                     ||||||||||||||||||| ||||| ||||||||||||||.||.||||||
RBAM_011650__    201 CTTTTTAATGTTTTTAAGC-GGCTTGGAAATTGATTTTTCTTCATTTGAG    249

BSNT_01946___    250 AAAGGAAAGAAAAAGCAGTTCCTGCCGAATGGCAAGGAAGCGCCGAATAC    299
                     |||||.||||||||.||.|||||.||||||||||||||||||||.||.||
RBAM_011650__    250 AAAGGGAAGAAAAAACAATTCCTTCCGAATGGCAAGGAAGCGCCCAACAC    299

BSNT_01946___    300 GTTTGCTGCGGCATCTG-TTATTTTCGTCGGTATTTTTATTTTATCATTG    348
                     ||||.||||.||| ||| ||||.||..||||.||.|||||||||||||||
RBAM_011650__    300 GTTTTCTGCCGCA-CTGATTATCTTTTTCGGCATCTTTATTTTATCATTG    348

BSNT_01946___    349 CTCTTGTCCTATGGGTTCGTCTTGGCCGGATTTATCCAAAATGCATTTTT    398
                     ||..|||||||||..||.||.||.|||||.|||||.|||||.||||||||
RBAM_011650__    349 CTGCTGTCCTATGCCTTTGTATTAGCCGGTTTTATTCAAAACGCATTTTT    398

BSNT_01946___    399 GATGACCCTGATTATTTCAACGATTTCATTAGGCGTTGTCGTTCCAACAT    448
                     .|||||.||.||||||||.|||||.|||.|.||.||.||.||.||.||.|
RBAM_011650__    399 AATGACGCTTATTATTTCGACGATATCACTCGGTGTGGTGGTCCCGACTT    448

BSNT_01946___    449 TAAAAGAAGAACGGATCATGAATTCGAATATCGGGCAGATTATTTTGCTT    498
                     ||||.|||||||||||||||||.||.||||||||.|||||.||..|||||
RBAM_011650__    449 TAAAGGAAGAACGGATCATGAACTCCAATATCGGCCAGATCATCCTGCTT    498

BSNT_01946___    499 GTTGCTGTTATTGCTGATTTGGCCACGATGATTCTTCTTGCTGTTTTTTC    548
                     ||.||.|||||.||.||.|||||.|||||||||||.||.|||.|.||.||
RBAM_011650__    499 GTCGCCGTTATCGCGGACTTGGCTACGATGATTCTGCTCGCTTTCTTCTC    548

BSNT_01946___    549 TTCTTTATACGGAGAGGACAGCGGAAACATGTGGCTCCTGATGATTCTGT    598
                     ||||.|.||||||||.|||||||||||.||||||||.|||.|||||||.|
RBAM_011650__    549 TTCTCTTTACGGAGAAGACAGCGGAAATATGTGGCTTCTGTTGATTCTCT    598

BSNT_01946___    599 TTGCGGCCGGAGTGGTGCTTTACTTTTTCGGCCGGGTCTTCAAACATCGC    648
                     ||||.||.||.||.|||||.||.||.||||||.||.||||.|||||.||.
RBAM_011650__    599 TTGCCGCGGGGGTCGTGCTGTATTTCTTCGGCAGGATCTTTAAACACCGT    648

BSNT_01946___    649 TCTTTTGTTCAATCCATGTCAAAAGGGACGATCCAGATCGGGACGCGTGC    698
                     ||.|||||.||.||.|||||.|||||.||..|.||||||||.|||.|.||
RBAM_011650__    649 TCATTTGTGCAGTCGATGTCCAAAGGCACCGTGCAGATCGGCACGAGAGC    698

BSNT_01946___    699 CATTTTTACGTTAATTATTGTACTCGTTGCCCTGTCTGAATCACTTGGGG    748
                     ||||||.||..|.|||||.||.||.||.||..|.||.|||||.||.||||
RBAM_011650__    699 CATTTTCACACTGATTATCGTGCTTGTCGCTTTATCGGAATCTCTCGGGG    748

BSNT_01946___    749 CGGAAAATATTCTCGGCGCTTTCTTAGCGGGGGTTCTTGTTTCCCTGCTT    798
                     |||||||||||||||||||.||.||.||.||.|||||.||.||.||.||.
RBAM_011650__    749 CGGAAAATATTCTCGGCGCGTTTTTGGCAGGCGTTCTGGTATCGCTTCTG    798

BSNT_01946___    799 TCGCCAAACAAAGAACTTGTTCAGCAGCTGGACTCATTCGGTTATGGGTT    848
                     ||.||.||.||||||.|.||..|.||||||||.||.|||||.||.|||||
RBAM_011650__    799 TCTCCGAATAAAGAAATGGTGGAACAGCTGGATTCCTTCGGCTACGGGTT    848

BSNT_01946___    849 CTTAATACCGATTTTCTTCGTGATGGTCGGTGTGAAGCTTGATATTTGGA    898
                     .|||||.|||||.||.|||||.||||||||.|||||..|.||.|||||||
RBAM_011650__    849 TTTAATTCCGATCTTTTTCGTCATGGTCGGGGTGAAATTGGACATTTGGA    898

BSNT_01946___    899 CTCTTTTCCAGGAT---AAAACAATTTTAATCATGATTCCGCTCCTGCTG    945
                     |.||.|||||.|||   ||||||   ||||..|||||||||||.||.|||
RBAM_011650__    899 CGCTCTTCCAAGATCCGAAAACA---TTAACGATGATTCCGCTGCTTCTG    945

BSNT_01946___    946 CTGGCGCTGTTAGTCAGCAAAATCATTCCTGTCATGTACTTAAAGAAGTG    995
                     ||.||||||||..||||||||||..|.||.||..|.||.||||||||.||
RBAM_011650__    946 CTTGCGCTGTTTATCAGCAAAATGTTCCCGGTGTTTTATTTAAAGAAATG    995

BSNT_01946___    996 GTATGATAACCGAACCATTTTCGCGTCTGGTTTCCTGCTGACATCAACGC   1045
                     ||||||.||..|||||.|.||.||.||.||.||..|||||||.||.||||
RBAM_011650__    996 GTATGACAAAAGAACCGTGTTTGCTTCGGGCTTTTTGCTGACGTCCACGC   1045

BSNT_01946___   1046 TTTCGCTCGTGATTGCCGCTGCAACAATCGGCCAGCA--GCTTCACGTGA   1093
                     |.|||||.||.||.||.||.||.||.|||||  ||.|  |||.|||.|.|
RBAM_011650__   1046 TGTCGCTTGTTATCGCGGCGGCTACGATCGG--AGAAAGGCTCCACATTA   1093

BSNT_01946___   1094 TCAGTGCAAATATGTCAGGAGCGCTAATTTTAGTAGCCGTCATTGCAAGT   1143
                     ||.|.||.||||||||.||.|||||.|.||||||.||.||.|||||.||.
RBAM_011650__   1094 TCGGCGCCAATATGTCCGGCGCGCTGACTTTAGTTGCGGTTATTGCCAGC   1143

BSNT_01946___   1144 ATTTTTACGCCGATCTGTTTTAAAAAATTATACAAACGG-GAAGAGCAGC   1192
                     ||..|.|||||||||.|.|||||.||||||||||||||| .|||.|| ||
RBAM_011650__   1144 ATCATCACGCCGATCGGCTTTAAGAAATTATACAAACGGCAAAGTGC-GC   1192

BSNT_01946___   1193 CGGAGGAGAAAAAGACG-ATTACGTTCATTGGCGCCAATCAAATGACTTT   1241
                     ||.||||.|||||| || |||||.||.||.||||||||.||||||||..|
RBAM_011650__   1193 CGCAGGAAAAAAAG-CGCATTACATTTATCGGCGCCAACCAAATGACACT   1241

BSNT_01946___   1242 GCCTGTTACACTTGAATTGCCAGAGGAAGAGTATGACGTGCGTGTTGTAC   1291
                     .||.|||||.||.||||||||.||.||.||.|||||.||.||.||.||.|
RBAM_011650__   1242 TCCGGTTACGCTGGAATTGCCCGATGAGGAATATGAAGTACGGGTCGTCC   1291

BSNT_01946___   1292 ACGTCTACCAAGAGAATGCGGAGGAAAAGCTGTCAGAATCAGTGTTTGCT   1341
                     |.||.||.||.||.|||||.|.|||||.|||..|.|||||.||.|||.|.
RBAM_011650__   1292 ATGTGTATCAGGAAAATGCCGGGGAAACGCTTGCGGAATCCGTTTTTTCG   1341

BSNT_01946___   1342 GTTGAAACAATTTCTGACTATGAATACGAGACGCTTGAATCACTCGGCAT   1391
                     |||||.||.||||||||.||.||...||..||||||||.||.|.|||.||
RBAM_011650__   1342 GTTGACACGATTTCTGATTACGAGCCCGGCACGCTTGAGTCGCACGGTAT   1391

BSNT_01946___   1392 TTTTGAAACGGATATCCTCGTTGTGGCGACAGGAAATGAAGATATGAATG   1441
                     |||..||||||||||.||.||.||||||||.||||||||||||.||||.|
RBAM_011650__   1392 TTTCAAAACGGATATTCTTGTCGTGGCGACGGGAAATGAAGATGTGAACG   1441

BSNT_01946___   1442 CACACATTGCATTACTTGCAAAAGAAAAAGGCACAGAAAGAGTCATTGCA   1491
                     |..|.||.||.|||.|.||.|||||.|||||.||.||..|..||||.|||
RBAM_011650__   1442 CCGAAATCGCCTTAATAGCGAAAGAGAAAGGGACTGAGCGTATCATCGCA   1491

BSNT_01946___   1492 AGCGTAGGATCACCGGAGCATGAAGCAGCTCTGAAGGAGCAGGGAATCAG   1541
                     |||||.||.||....|||||||||.||...|||||.||..||||.|||||
RBAM_011650__   1492 AGCGTCGGCTCGGTTGAGCATGAAACAAAACTGAAAGAAGAGGGCATCAG   1541

BSNT_01946___   1542 CATCTTTTCTATTCTGCTGTCGACAAAAACGCTGCTT-CGCGCACTGATA   1590
                     .||.||||||||.||.|||||.|||||.||||| ||| ||||||.|.||.
RBAM_011650__   1542 TATTTTTTCTATCCTTCTGTCTACAAAGACGCT-CTTGCGCGCATTAATT   1590

BSNT_01946___   1591 GAAGCGCCTGGCGTCATGAAGCTGCTCACGAACCAAGAGTCTTCGCTGTA   1640
                     ||.|||||.|||||.||||..||.||.|||||..|.|||||||||.|.||
RBAM_011650__   1591 GAGGCGCCGGGCGTGATGAGCCTCCTGACGAATGAGGAGTCTTCGTTATA   1640

BSNT_01946___   1641 TCAAATTAATATGGAGAACAGTAAA-------TATGATGGTGTCATTTTA   1683
                     |||.||.|||.||||       |||       |||.|.||..|||||.|.
RBAM_011650__   1641 TCAGATCAATCTGGA-------AAACCCGGCGTATAACGGCATCATTCTG   1683

BSNT_01946___   1684 CGGGAATTCCCTTTAACAGGTGACGTCATCTTTGTCAGGATTTTCAGAGG   1733
                     ||||||||.||..|.|..||.||.||.||.||.|||.|||||||||||||
RBAM_011650__   1684 CGGGAATTTCCGCTGATGGGCGATGTGATTTTCGTCCGGATTTTCAGAGG   1733

BSNT_01946___   1734 TGTGGACAGCATCGTTCCTCATGGGGATACTAGGCTGAAACTGGGAGATC   1783
                     ||||||||||||||||||.||.||.||.||..||||||||...|||||.|
RBAM_011650__   1734 TGTGGACAGCATCGTTCCGCACGGAGACACGCGGCTGAAAACAGGAGACC   1783

BSNT_01946___   1784 GCTTAATTGTCACCGGATCTCGGGGGTACGTAACGGATCTTAAGAAAACA   1833
                     |..|.||.|||||.||.||.||....|||||..||||.| |.|||||| |
RBAM_011650__   1784 GTCTCATCGTCACGGGCTCGCGCAACTACGTGTCGGAAC-TGAGAAAA-A   1831

BSNT_01946___   1834 T--TGGAAG---GATAA   1845
                     |  |.||||   ||   
RBAM_011650__   1832 TCCTTGAAGCTTGA---   1845


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