Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01929 and RBAM_011530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:40
# Commandline: needle
# -asequence dna-align/BSNT_01929___yjbF.1.9828.seq
# -bsequence dna-align/RBAM_011530___yjbF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01929___yjbF-RBAM_011530___yjbF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01929___yjbF-RBAM_011530___yjbF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01929___yjbF
# 2: RBAM_011530___yjbF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1316
# Identity: 739/1316 (56.2%)
# Similarity: 739/1316 (56.2%)
# Gaps: 319/1316 (24.2%)
# Score: 1829.0
#
#
#=======================================
BSNT_01929___ 1 TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGC-- 48
.||||.|||||||||||||..|||||.|...|..||||.|| |||
RBAM_011530__ 1 ATGTTCAGTGCTGTGACTGCCGACGGACGGCTCATTCAGCT----GGCCG 46
BSNT_01929___ 49 ---GCTCAGCAAAACCAGAAATTAAAGCG--------------GAGACGG 81
|||...||| ||.|| |||||| ||.|||.
RBAM_011530__ 47 GAAGCTATTCAA----AGGAA--AAAGCGGCGGAGCTGAGAAAGAAACGC 90
BSNT_01929___ 82 TTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCA 131
|..|||||.||.||.||||...|.|||||.|.|.|.||.||.||||...|
RBAM_011530__ 91 TGGTTCTGCCCCGTTTGCGAAAGTGAGCTTGATATCAAACTGGGACGGGA 140
BSNT_01929___ 132 AAAAGCGCCGCATTTTGCCCATAAACAGAACAAGTCCTG-CTCCATAGAC 180
.|||..||||||.||.||.||||||.|.|.||.| ||| .|||...|..
RBAM_011530__ 141 GAAACTGCCGCACTTCGCTCATAAAAAAAGCAGG--CTGTGTCCGGGGGA 188
BSNT_01929___ 181 AT-CGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATG 229
|| ||||||.|||||||..|||||..|.|||||||||||.|||||.|.|.
RBAM_011530__ 189 ATCCGAACCTGAAAGCGAATACCATCTGGAAGGAAAAAGGCAGCTTTTTC 238
BSNT_01929___ 230 TATGGCTGAAAACACAACGG----GCTTCA-CCAATATTGGAGCCGTATA 274
|.|||.|.||.||||||.|| ||.||| || ||||.||||||.
RBAM_011530__ 239 TCTGGTTAAAGACACAAGGGTGCAGCGTCAGCC-----TGGAACCGTATC 283
BSNT_01929___ 275 TAA--------GGACAATCAACCAAAGACCGGACGTCATGGCAAGAATCA 316
|.| ||| ||..|.||.|||.|.|.|||...||.|
RBAM_011530__ 284 TGACTTCCGCGGGA--------CAGCGGCCTGACTTGACGGCGGAAAGC- 324
BSNT_01929___ 317 AGGAG--CATATGCTTGCTGTTGAATATCAATGCGCCA--CTATCGCTCC 362
|||| .|.|.|||.|||.||||||.||||||.||.| ||.||| .|
RBAM_011530__ 325 -GGAGAAGAGAGGCTGGCTTTTGAATTTCAATGTGCGAACCTTTCG--GC 371
BSNT_01929___ 363 AGATGTCTTTCAAAAG-CGGACAGAGGGCTTCAAACAAGAAGGAATCATT 411
.|| .|||||.||.|| |||||.|..|||.|.|||.|.|..|| .|.
RBAM_011530__ 372 GGA-CTCTTTAAAGAGCCGGACGGCAGGCCTGAAAAACGCCGG----GTA 416
BSNT_01929___ 412 CCG--CAG--TGGATTATGGGATACAGC----CGCTTAAAACGGACTGCT 453
||| |.| |||||.||.|| ||| ||.||||||||||..||.
RBAM_011530__ 417 CCGGCCGGTCTGGATCATCGG----AGCAAAACGGTTAAAACGGATGGCC 462
BSNT_01929___ 454 TCGTCCTTTTATCAGCTTTCAGCTTTTCATTGGCAGTTTATCAATGCAAG 503
.||...||||..|.||||||.||||||||.||||||| ||..|| |||
RBAM_011530__ 463 GCGCAATTTTTCCGGCTTTCTGCTTTTCACTGGCAGT---TCTTTG-AAG 508
BSNT_01929___ 504 TCCATACA----------GAGAGCTGATATGTTATTGTCCTGAAAGGCGT 543
|||||.|| .| ||| |.|||.||.||.||....||.
RBAM_011530__ 509 TCCATTCATTTTCCTCCTTA---CTG---TTTTACTGCCCCGACGCCCGC 552
BSNT_01929___ 544 TCTTTTCTCCGGCT-CAGCCACATCATTCCATTCTACACAAACCATTCTT 592
||.|||..|.|||| ||..| |||||.|||.||.|||||...|.||||||
RBAM_011530__ 553 TCCTTTTACAGGCTGCATTC-CATCACTCCGTTTTACACCGGCTATTCTT 601
BSNT_01929___ 593 ATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGACGATCTT 642
||.|| |.|..||| |.|.||||.||
RBAM_011530__ 602 ATGCC---GGCTTAAC---CGCAATCCCTC-------------------- 625
BSNT_01929___ 643 TTTTTCACTGAACCGAAACCCTCAATTCAATATTCA---GGCTGGACG-- 687
||||| ||...|||||...||..||.|..||| ||..||.||
RBAM_011530__ 626 ---TTCAC--AAAGCAAACCTGAAAGACATTTGTCATCCGGAAGGGCGGC 670
BSNT_01929___ 688 AAAGCGATTCA---------------------CCGT-------TTTCGCC 709
|.|||| ||| |||| ||.|||.
RBAM_011530__ 671 ACAGCG--TCAGACTTCCCTCGTGGGGACGTGCCGTAGCCGGCTTCCGCA 718
BSNT_01929___ 710 ATAAACCCCATCGG------TTTAACTCAA-AGGAAATAAATC--GCCTT 750
..||| |.||| ||||.||.|| ||| | |.|||
RBAM_011530__ 719 GCAAA----AGCGGGCGGTTTTTATCTGAAGAGG--------CCGGTCTT 756
BSNT_01929___ 751 A---GGCTGCTGTTTTATGAGAAGCGGCAGACAT-------CTTTTTCTT 790
| |||..||.||||| ||..|||||| |.|||.|.|
RBAM_011530__ 757 ATCCGGCGTCTTTTTTA-------CGAAAGACATCAGGTTGCATTTCCAT 799
BSNT_01929___ 791 TTCTGCCGACTGAAGTGTTTGTTCCTGTT--AGAAAAGGGGC--AGTTTT 836
||||.||..|||||||||||.||||.||| || .|||| .||.||
RBAM_011530__ 800 TTCTCCCCTCTGAAGTGTTTATTCCCGTTTCAG----CGGGCTTTGTGTT 845
BSNT_01929___ 837 TAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTGTATTTG----TTTATG 882
|...|||||.|||||||||||||||||...|.|.||.||| ||
RBAM_011530__ 846 TGCAAGTCCCGTTTTTGTGTGGCAGGGCCATTTATACTTGCGGCTT---- 891
BSNT_01929___ 883 ACGGATCTTGGAGGT-----AAACGTGCGCCAATTCGTTTTTCAGCC--- 924
.||||.||| | |||.|.|||||.||.||..|.||.|.|
RBAM_011530__ 892 GCGGAACTT-----TCTAAAAAAGGCGCGCCGATCCGAATATCCGGCATG 936
BSNT_01929___ 925 ------GTTTTGCAGCAGTGCAAACTGCACATTCATAA----TAAGAACA 964
|.|||.|.|||| ||| ||.| ||||.|.|
RBAM_011530__ 937 GTTCATGATTTACGGCAG---AAA----------ATCAGGCGTAAGGAGA 973
BSNT_01929___ 965 T-----TGCACTCAGGTTTGAATGCAGCGAAGAGTGTCTT-TCAGAA--G 1006
| |||..|..|||| || .||||..|.||| |||||| |
RBAM_011530__ 974 TCCGGATGCGGTATGGTT------CA--CAAGATAGCCTTATCAGAATGG 1015
BSNT_01929___ 1007 CGGTTAAACAGTATATTGATTTTTTGTGCAAGAAGGGATTTTTAAGGGAG 1056
||||.|||||.|||..||||||.||.|||..|.|||..|||||||||||.
RBAM_011530__ 1016 CGGTAAAACAATATGCTGATTTCTTATGCTTGCAGGATTTTTTAAGGGAA 1065
BSNT_01929___ 1057 ACTCAGAAAGAAGTATATGTG------------CTGAATCAGCCTGCAGG 1094
|.|.||||.|||||||||.|| |.|||.|..||| ||..
RBAM_011530__ 1066 ATTGAGAATGAAGTATATATGCCCTCATCTCAACGGAAGCTCCCT-CAAA 1114
BSNT_01929___ 1095 CGGCATACA------CTCCATGCAGGATCTCATAGAAAGAGACCGCAGCT 1138
|||||.| | |.|| .||.|||||| |||
RBAM_011530__ 1115 CGGCAGA-AGAGCTGCGCC-GGCGGGATCT-----------------GCT 1145
BSNT_01929___ 1139 GTTTTAT--AGAATGA 1152
.||||.| .||||||
RBAM_011530__ 1146 CTTTTTTGGGGAATGA 1161
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