Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01905 and RBAM_011380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:38
# Commandline: needle
# -asequence dna-align/BSNT_01905___appA.1.9828.seq
# -bsequence dna-align/RBAM_011380___appA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01905___appA-RBAM_011380___appA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01905___appA-RBAM_011380___appA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01905___appA
# 2: RBAM_011380___appA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1674
# Identity: 1190/1674 (71.1%)
# Similarity: 1190/1674 (71.1%)
# Gaps: 87/1674 ( 5.2%)
# Score: 3919.5
#
#
#=======================================
BSNT_01905___ 1 ATGAAAAGACGGAAAACCGCACTGATGATGCTAAGTGTATTGATGGTTCT 50
||||||..|||.||||.|||||||||||||||||||||.||.||||...|
RBAM_011380__ 1 ATGAAATTACGTAAAAGCGCACTGATGATGCTAAGTGTTTTTATGGCGTT 50
BSNT_01905___ 51 GGCCATCTTTTTATCAGCCTGCTCGGGATCAAAATCAAGCAACAGCAGCG 100
.||||||||..|.|||||||||||.||.|||||||| ||..||||.||
RBAM_011380__ 51 TGCCATCTTCCTGTCAGCCTGCTCCGGCTCAAAATC---CACAAGCACCG 97
BSNT_01905___ 101 CGAAA---AAATCAGCAGGCAAACCGCAGCAAGGCGGGGATTTGGTTGTT 147
|| |||.|.|||||.||||||||..|||||||.|||||||||||.
RBAM_011380__ 98 ---AATCCAAACCGGCAGGAAAACCGCAAAAAGGCGGAGATTTGGTTGTC 144
BSNT_01905___ 148 GGTTCAATCGGAGAACCCACACTTTTTAACTCTCTGTATTCTACCGATGA 197
||.||||.|||.|||||||||||||||||..|.||.|||||||||||||.
RBAM_011380__ 145 GGGTCAACCGGGGAACCCACACTTTTTAATCCACTTTATTCTACCGATGT 194
BSNT_01905___ 198 CGCAAGTACGGATATTGAAAATATGCTGTACAGCTTTTTAACGAAAACGG 247
.||||||.|.|||||||||...|||||.||||||...|||..|.||||.|
RBAM_011380__ 195 TGCAAGTTCTGATATTGAAGGAATGCTTTACAGCACATTATTGGAAACTG 244
BSNT_01905___ 248 ATGAAAAACTAAATGTGAAATTGTCACTCGCTGAAAGCATTAA-AGAATT 296
||||.|||.||||.||.||...|||.||.||||||| .|.||| ||||..
RBAM_011380__ 245 ATGAGAAATTAAACGTCAAGCCGTCGCTGGCTGAAA-AAGTAACAGAAGC 293
BSNT_01905___ 297 AGACGGCGGCCTTGCATATGATGTGAAAATTAAAAAAGGCGTTAAGTTTC 346
.|||||.||..|..|.||||||||.|||.|.||||||||||||||.||.|
RBAM_011380__ 294 TGACGGGGGATTAACGTATGATGTAAAACTGAAAAAAGGCGTTAAATTCC 343
BSNT_01905___ 347 ATGACGGAAAAGAACTGACTGCAGACGACGTCGTATTTACGTACAGTGTC 396
||||.||||||||||||||.||.||.||.||.||.||.||.|||||..||
RBAM_011380__ 344 ATGATGGAAAAGAACTGACGGCCGATGATGTTGTTTTCACCTACAGCATC 393
BSNT_01905___ 397 CCT-TTAAGCAAAGATTACAAGGGAGAACGCGGTTCAACATATGAAATGC 445
||| |||| ||||||||||||.||.||.||.||.||....|.|||....|
RBAM_011380__ 394 CCTCTTAA-CAAAGATTACAACGGTGAGCGTGGCTCGGGTTTTGAGTCCC 442
BSNT_01905___ 446 TGAAATCCGTAGAAAAAAAAGGCGATTACGAAGTCTTGTTTAAGCTGAAA 495
|.|||||||||...||||||||..|.||.|||.|...||||||..||||.
RBAM_011380__ 443 TTAAATCCGTAACGAAAAAAGGAAAATATGAAATTCAGTTTAAAATGAAG 492
BSNT_01905___ 496 TATAAAGACGGTAATTTCTACAACAATG-CGT--TAGACAG-CACAGCTA 541
.|.|||||.|...|||||| |.|||| ||| |.||||| .||.|| |
RBAM_011380__ 493 AAAAAAGATGCCTATTTCT---ATAATGTCGTTCTCGACAGTTACGGC-A 538
BSNT_01905___ 542 TTCTGCCGAAACATATTCTCGGTAATGTTCCGATTGCTGATTTAGAAGAA 591
||.||||.||||||||..|.|||||.||.|||.||||.|||.|.|.|||.
RBAM_011380__ 539 TTTTGCCAAAACATATATTGGGTAAGGTCCCGGTTGCAGATCTGGGAGAG 588
BSNT_01905___ 592 AATGAGTTTAACAGAAAGAAACCAATCGGTTCAGGACCATTTAAGTTTAA 641
|||||.||||||.|.||.||.|||||||||||.||.||.|||||||||..
RBAM_011380__ 589 AATGAATTTAACCGTAAAAATCCAATCGGTTCCGGTCCGTTTAAGTTTGT 638
BSNT_01905___ 642 GGAATGGAAGCAGGGCCAATATATTAAGCTCGAAGCGAATGATGATTACT 691
.||.|||||..|||||.|.|||.|.||.||.|||||.|||||||||||||
RBAM_011380__ 639 TGAGTGGAAAAAGGGCGAGTATGTCAAACTGGAAGCAAATGATGATTACT 688
BSNT_01905___ 692 TTGAAGGAAGACCGTATTTAGATACTGTGAC-GTATAAAGTC-ATTCCTG 739
|||..||.|||||.||..|.|||.|.||||| |||.||| | ||.||||
RBAM_011380__ 689 TTGGCGGCAGACCTTACCTTGATTCAGTGACAGTAAAAA--CAATACCTG 736
BSNT_01905___ 740 ACGCAAATGCTGCCGTTGCTCAGCTGCAGGCAGGCGATATTAATTTCTTT 789
|..|.||.||.|||||.||.|||.|..|.||.||.||||||.|||||||.
RBAM_011380__ 737 ATTCTAACGCGGCCGTGGCCCAGTTAAAAGCGGGGGATATTGATTTCTTC 786
BSNT_01905___ 790 AATGTGCCCGCCAC------TGACTAC----AAAACGGCTGAAAAATTCA 829
..||||||.|.||| ||| ||| ||||||..||.|||..|.|
RBAM_011380__ 787 GTTGTGCCGGGCACAGATTTTGA-TACGGTTAAAACGTTTGGAAATGTGA 835
BSNT_01905___ 830 ACAACCTAAAAATCGTTACTGA-TTTGGCATTAAGTTATGTGTACATCGG 878
|...| |||| |||| .|||| .||||..||....||.|||||
RBAM_011380__ 836 AGGTC----AAAT-----CTGACCTTGG-TTTAAACTACAGCTATATCGG 875
BSNT_01905___ 879 GTGGAATGAAAAAAATGAATTATTCAAGGATAAAAAGGTTCGTCAAGCGC 928
.||||||||.|||||.||..|.||.||.||.|||||.||.|||||.||..
RBAM_011380__ 876 CTGGAATGAGAAAAAAGAGATCTTTAAAGACAAAAAAGTGCGTCAGGCAT 925
BSNT_01905___ 929 TGACAACCGCTCTTGACCGCGAGTCAATCGTCAGCCAAGTATTAGATGGA 978
||||...||||||||||.|..||.||||.||....|||||..|..|.|||
RBAM_011380__ 926 TGACTTACGCTCTTGACAGGCAGGCAATGGTGGATCAAGTGCTGAACGGA 975
BSNT_01905___ 979 GACGGCGAGGTAGCTTACATTCCGGAAAGCCCTTTATCTTGGAACTATCC 1028
|||||..|||||||..|..||||.||.||.||..|.||.|||||.|||||
RBAM_011380__ 976 GACGGTAAGGTAGCGGATGTTCCTGAGAGTCCGCTGTCATGGAATTATCC 1025
BSNT_01905___ 1029 TAAAGATATAGATGTTCCGAAATTTGAGTACAACGAGAAAAAAGCGAAAC 1078
.||...|| |.||.||||.||||||.||.||...|||||||||.||.|
RBAM_011380__ 1026 GAAGTCTA---AAGTGCCGACATTTGATTATAATCCGAAAAAAGCAAAGC 1072
BSNT_01905___ 1079 AGATGCTTGCAGAAGCCGGCTGGAAAGATACGA--ACGGTGACGGCATTC 1126
||.||||...|||||||||.|||.||| ||.| |||||||||||...|
RBAM_011380__ 1073 AGCTGCTAAAAGAAGCCGGATGGGAAG--ACCATGACGGTGACGGCTACC 1120
BSNT_01905___ 1127 TGGATAAAGACGGAAAGAAATTCTCGTTTACCCTTAAAACGAACCAAGGA 1176
|.||||||||||||||.||||||||.|||....||||||||||.|||||.
RBAM_011380__ 1121 TTGATAAAGACGGAAAAAAATTCTCATTTGAAATTAAAACGAATCAAGGC 1170
BSNT_01905___ 1177 AACAAAGTCCGTGAAGACATCGCTGTCGTCGTTCAGGAACAGCTGAAAAA 1226
||.|||.|.||||||||..|.|||||.|||||||||.|.||..|.|||.|
RBAM_011380__ 1171 AATAAAATTCGTGAAGATTTAGCTGTTGTCGTTCAGCAGCAATTAAAAGA 1220
BSNT_01905___ 1227 AATCGGCATTGAAGTGAAAACCCAGATCGTTGAATGGAGCGCTCTCGTT- 1275
|.|.||.||.||.|..|||.|.|..||.|||||||..||.| ||||
RBAM_011380__ 1221 AGTTGGAATCGAGGCTAAACCGCGAATTGTTGAATTCAGTG----CGTTA 1266
BSNT_01905___ 1276 ---GAACAAATGAATCCTCCGAATTGGGATTTTGATGCAATGGTCATGAG 1322
|||||.|..|.|.|.||.||||||||||.|||.||..|..|..|..|
RBAM_011380__ 1267 ATCGAACAGACAAGTGCCCCTAATTGGGATTATGACGCTCTTCTTCTCGG 1316
BSNT_01905___ 1323 ATGGAGTTTATCCACATTCCCAGATCAATATGATATCTTCCATTCAAGCC 1372
|||||||.|..|.||.|||||.|||||.|....|||||||||||||||||
RBAM_011380__ 1317 ATGGAGTCTTGCAACGTTCCCGGATCAGTTCTCTATCTTCCATTCAAGCC 1366
BSNT_01905___ 1373 AGAT-TAAAAAGGGTTTGAACTACGTTTGGTATAAAAATGCCG-AAGCGG 1420
| || .|||||.||..||||..|..|.||||||||||| .||| |||..|
RBAM_011380__ 1367 A-ATCGAAAAACGGGCTGAATAATATCTGGTATAAAAA-CCCGAAAGTCG 1414
BSNT_01905___ 1421 ATAAACT-CATGAAAGATGCAAAATCAATCAGTGATAGAAAGCAGTAT-T 1468
||||.|| |.|| ||||.||.||..||||.|..||.||||| ||.|| .
RBAM_011380__ 1415 ATAAGCTGCTTG-AAGAAGCGAAGACAATTACAGACAGAAA--AGAATAC 1461
BSNT_01905___ 1469 CAAAAG-AATATGAGCAAATCTATCAAA-AAATTGCGGAAGATCAGCCCT 1516
|||||| |||||||..|.||.|| |||| ..|||||.|||||||||||.|
RBAM_011380__ 1462 CAAAAGAAATATGAAGAGATATA-CAAATTGATTGCTGAAGATCAGCCGT 1510
BSNT_01905___ 1517 ATACGTTCTTGTATTATCCTA--ACA---ACCATATGGCAATGCCGGAAA 1561
|.|..||| ||||.||| ||| ||||.|..||.||||||.|.|
RBAM_011380__ 1511 ACAGCTTC-----TTATTCTATTACAATTACCACAGAGCGATGCCGAATA 1555
BSNT_01905___ 1562 ATCTTGAAGGATACAAATATCATCCGAAACGTGATTTGTATAATATTGAA 1611
||.|..||||.||...||..||.||.|||..|||.|||||.|||||||||
RBAM_011380__ 1556 ATTTACAAGGCTATGTATTCCACCCTAAAAATGACTTGTACAATATTGAA 1605
BSNT_01905___ 1612 AAATGGTGGCT---TGAAAAATAA 1632
||||||||||| |.|||||||.
RBAM_011380__ 1606 AAATGGTGGCTGGATCAAAAATAG 1629
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