Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01883 and RBAM_011230
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_01883___carA.1.9828.seq
# -bsequence dna-align/RBAM_011230___carA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01883___carA-RBAM_011230___carA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01883___carA-RBAM_011230___carA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01883___carA
# 2: RBAM_011230___carA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1119
# Identity: 802/1119 (71.7%)
# Similarity: 802/1119 (71.7%)
# Gaps: 117/1119 (10.5%)
# Score: 2876.0
#
#
#=======================================
BSNT_01883___ 1 ATGGAAGGTTATTTAGTGTTAGAAGATGGGACATCGTTCAGCGGCGAGCT 50
|||.||||.||||||||.||.|||||.||.|||||.||..||||.||.||
RBAM_011230__ 1 ATGAAAGGCTATTTAGTATTGGAAGACGGAACATCATTTGGCGGTGAACT 50
BSNT_01883___ 51 GGACGGCCATGAAAA---------CTGTACGGGAGAAGCTGTTTTTTTCA 91
|||||| ||||...||.|||||.||||||||||
RBAM_011230__ 51 ---------TGAAAAAGAAGCCCGCTGTGTTGGCGAAGCGGTTTTTTTCA 91
BSNT_01883___ 92 CAGGAATGACAGGCTACCAGGAAGTGCTGACAGATCCATCGTATAAGGGA 141
|.||||||||.|||||.|||||||||||.|||||.||.||.||||||||.
RBAM_011230__ 92 CCGGAATGACGGGCTATCAGGAAGTGCTTACAGACCCGTCATATAAGGGT 141
BSNT_01883___ 142 CAGATTATTGTATTTACCTACCCGCTGATTGGCAACTACGGCATAAATGA 191
|||||.||.||.|||||.||.|||||.||.||.||||||||.||.|||||
RBAM_011230__ 142 CAGATCATCGTCTTTACGTATCCGCTCATCGGAAACTACGGAATTAATGA 191
BSNT_01883___ 192 AAAGGACTTTGAAAGCAAGAAACCGCAAGTAAAAGCAGCGGTTGTCTATG 241
|||.|||.|||||||.||||..||.|||||.||.||.|..|..|||||||
RBAM_011230__ 192 AAAAGACCTTGAAAGTAAGATTCCTCAAGTCAAGGCTGTTGCCGTCTATG 241
BSNT_01883___ 242 AGGCGTGTGATCACTTTTCTCATTATGAAGCGGTATACAGCCTCAAG--- 288
|.||||||||.||.||||||||..|.|||| |||.||||||
RBAM_011230__ 242 AAGCGTGTGAACATTTTTCTCACCACGAAG-------CAGTCTCAAGCTT 284
BSNT_01883___ 289 ----GAGTATTTACAGAAATGGAACATTCCGCTGTTAACCCATGTTGATA 334
|||||||||.|.|||||||||||.|||||.||||||.|.||.||.|
RBAM_011230__ 285 GAGAGAGTATTTAAATAAATGGAACATCCCGCTCTTAACCGAAGTGGACA 334
BSNT_01883___ 335 CGAGGGCTGTCGTGAAGAAAATCCG----GGCAAACGGGACGATG----- 375
|..||||.|||||.||.|..||||| || |||.||||||
RBAM_011230__ 335 CACGGGCCGTCGTCAAAACCATCCGCTCCGG----CGGCACGATGAACGC 380
BSNT_01883___ 376 ---GGTG-CAACAGTCACAGCCTCTAAAGAA------GGAGCTGAGAT-- 413
.||| ||||| |||| .|||| |.||| ||
RBAM_011230__ 381 TGCCGTGTCAACA---ACAG------GAGAAATTCCGGCAGC----ATCC 417
BSNT_01883___ 414 GGCCCTTCAACCAGAGAATGTGGCAGAGCAGGCTTCAG-CCCAGGAAATC 462
|| |.||||.||...|||.||||.||| .||| |..|.||.|||
RBAM_011230__ 418 GG-------AACAGAAAACCCGGCGGAGCTGGC-GCAGTCTGAAGACATC 459
BSNT_01883___ 463 AGCACATT------CGGCGACGGGAATAAACATATCGCTCTCATTGATTT 506
|...||.| |||.|||.|| |||||.||.||.||||||||
RBAM_011230__ 460 ACGTCAATGGGGAACGGAGACCGG------CATATTGCGCTGATTGATTT 503
BSNT_01883___ 507 TGGCTATAAAAAGTCAATCGCATCATCACTTGTCAAAAGAGGCTGCAAGG 556
.||.||||||||.||||||||.||.||||||||.||..|.|||||.||.|
RBAM_011230__ 504 CGGTTATAAAAAATCAATCGCCTCGTCACTTGTAAAGCGCGGCTGTAAAG 553
BSNT_01883___ 557 TTACTGTGGTGCCATACCAGCAAATGGAGGCCGTATACAACATCAAACCC 606
|.||.||..|.||.||.|||||.|||.|.||.||.|||.||||..|.||.
RBAM_011230__ 554 TAACGGTCATTCCGTATCAGCAGATGAACGCTGTTTACGACATTCAGCCT 603
BSNT_01883___ 607 GATGGCATTGTGCTATCGAACGGACCTGGAGATCCGAAAGCAATCCAGCC 656
||.||.||.|||||.||.|||||.||.||.||.||||||||.||...|||
RBAM_011230__ 604 GACGGAATCGTGCTCTCAAACGGCCCGGGCGACCCGAAAGCGATTGCGCC 653
BSNT_01883___ 657 ATATTTAGGAA--AGATCAAAAGCATCA----TCAGCCGCTTT--CCGAC 698
.|| .|.||| .|||.| ||||| |||| .|.||| ||| |
RBAM_011230__ 654 GTA--CATGAACCGGATTA----CATCATTACTCAG-TGATTTCCCCG-C 695
BSNT_01883___ 699 TCTCGGCATTTGTCTCGGACATCAGCTGATCGCGCTCGCGTTCGGAGGGA 748
.|||||||||||.|||||||||||||||||.||.||.||.||||||||.|
RBAM_011230__ 696 ACTCGGCATTTGCCTCGGACATCAGCTGATTGCCCTGGCTTTCGGAGGAA 745
BSNT_01883___ 749 ATACTTTTAAGCTGCCATTCGGACACAGGGGAGCTAATCATCCGGTCATC 798
||||.|.|||||||||.|||||.||||||||.||.||.|||||.|||||.
RBAM_011230__ 746 ATACGTATAAGCTGCCGTTCGGCCACAGGGGTGCCAACCATCCCGTCATT 795
BSNT_01883___ 799 GACCGTGAGACGAAACGGGTCTTTATGACAAGCCAAAACCACAGCTATGT 848
|||||..|.|||||||||||.||||||||||||||.||||||||||||||
RBAM_011230__ 796 GACCGGAAAACGAAACGGGTGTTTATGACAAGCCAGAACCACAGCTATGT 845
BSNT_01883___ 849 GGTTGATGAA-CAGTCGATTAATGAAGAAGAGCTCACGATCAGATTTCAT 897
.||||||||| || ||.|||.|.|||.|.|||||..|.||||||||||||
RBAM_011230__ 846 CGTTGATGAAGCA-TCAATTGACGAAAACGAGCTGTCCATCAGATTTCAT 894
BSNT_01883___ 898 CATGTCAATGATACGTCAGTTGAAGGGCTTGCCCATAAAAAA----CTGC 943
|||||||||||.||.|||||.|||||||| |||..|.|| ||.|
RBAM_011230__ 895 CATGTCAATGACACATCAGTGGAAGGGCT----CATTCATAAGCGCCTTC 940
BSNT_01883___ 944 CAGTCATGAGTGTGCAATTCCACCCGGAGGCCCATCCCGGACCGGCGGAA 993
|.||..|.||.||.||.||||||||.||.||.||.|||||||||||.||.
RBAM_011230__ 941 CCGTATTAAGCGTCCAGTTCCACCCTGAAGCTCACCCCGGACCGGCTGAG 990
BSNT_01883___ 994 AGCGAATGGGTTTTTGATGATTATCTAAAGAATGTGATACCAGCAAGGAG 1043
|||||.|||.|.||||||||.|.||||.||||.|||||||||||||||||
RBAM_011230__ 991 AGCGAGTGGATATTTGATGAATTTCTAGAGAAAGTGATACCAGCAAGGAG 1040
BSNT_01883___ 1044 AGAAATCGCGCATGCCTAA 1062
|||||||||.|||||||||
RBAM_011230__ 1041 AGAAATCGCTCATGCCTAA 1059
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