Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01882 and RBAM_011220

See Amino acid alignment / Visit BSNT_01882 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:36
# Commandline: needle
#    -asequence dna-align/BSNT_01882___argD.1.9828.seq
#    -bsequence dna-align/RBAM_011220___argD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01882___argD-RBAM_011220___argD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01882___argD-RBAM_011220___argD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01882___argD
# 2: RBAM_011220___argD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1186
# Identity:     879/1186 (74.1%)
# Similarity:   879/1186 (74.1%)
# Gaps:          56/1186 ( 4.7%)
# Score: 3116.0
# 
#
#=======================================

BSNT_01882___      1 ATGAGCAGCTTGTTTCAAACCTACGGCCGTTGGGATATTGACCTCAAAAA     50
                     ||||||||..|.||||||||||||.||||.|||...||.||..|||||||
RBAM_011220__      1 ATGAGCAGTCTATTTCAAACCTACAGCCGCTGGCCCATCGATATCAAAAA     50

BSNT_01882___     51 AGC-AAAGGG--AACGTACGTT---GAGGATCAAAACGGCAAATCATACC     94
                     ||| ||||||  ||      ||   ||||||.|||||||.|||.|.||.|
RBAM_011220__     51 AGCGAAAGGGACAA------TTGCAGAGGATGAAAACGGAAAAACGTATC     94

BSNT_01882___     95 TTGATTTCATTCAGGGGATTGCGGTATCAAATCTAGGACACTGCCATGAA    144
                     |.|||||.||||||||.||.||.||.||.|||||.||.||.||.|||||.
RBAM_011220__     95 TCGATTTTATTCAGGGCATCGCCGTTTCCAATCTCGGCCATTGTCATGAT    144

BSNT_01882___    145 GCGGTGACAGAGGCAGTCAAAAAACAGCTTGACAGCGTATGGCACGTATC    194
                     |.|||.|||||.|||||.|||.|||||||||||||||||||||||||.||
RBAM_011220__    145 GAGGTCACAGAAGCAGTGAAAGAACAGCTTGACAGCGTATGGCACGTTTC    194

BSNT_01882___    195 TAACCTGTTTCAAAACAGTCTCCAAGAGCAAGCGGC-GCAGAAGCTGGCA    243
                     .||.||||||.||||...|||.||.||..||||.|| ||| |||||.||.
RBAM_011220__    195 CAATCTGTTTGAAAATGATCTTCAGGAAAAAGCCGCGGCA-AAGCTTGCC    243

BSNT_01882___    244 GCGCATAGTGCAGGAGATCTTGTCTTTTTCTGCAACAGCGGCGCAGAGGC    293
                     |..|||||.||.||.|||||.||.||.||||||||||||||.||.||.||
RBAM_011220__    244 GAACATAGCGCGGGGGATCTCGTTTTCTTCTGCAACAGCGGGGCCGAAGC    293

BSNT_01882___    294 GAATGAAGGTGCGATAAAGCTTGCCCGAAAAGCAACTGGAAAAACAAAAA    343
                     |||||||||.||.||.||||||||.||.||||||||.|||||.|||||||
RBAM_011220__    294 GAATGAAGGCGCCATTAAGCTTGCTCGTAAAGCAACGGGAAAGACAAAAA    343

BSNT_01882___    344 TCATCACTTTTCTTCAGTCGTTCCATGGCCGCACGTATGCAGGGATGGCT    393
                     |..|.||.||||.|||.||.||.||.||.||.||.|||||.||||||||.
RBAM_011220__    344 TTGTAACATTTCATCAATCCTTTCACGGACGGACCTATGCGGGGATGGCC    393

BSNT_01882___    394 GCGACCGGACAGGATAAAATCAAAACAGGCTTCGGCCCGATGCTTGAAGG    443
                     ||.||||||||.||.||||||||.||.||.|||||.|||||||||.||||
RBAM_011220__    394 GCCACCGGACAAGACAAAATCAAGACCGGTTTCGGACCGATGCTTCAAGG    443

BSNT_01882___    444 CTTTCACTACCTGCCATACAATGATCCTTC-----------TGCTTTTAA    482
                     |||||||||.||.||.|.|||||||||.||           .|||||.||
RBAM_011220__    444 CTTTCACTATCTTCCGTTCAATGATCCGTCGGCATTCAGCACGCTTTCAA    493

BSNT_01882___    483 AGCTCTTGGGGAGGAAGGCGATATTGCCGCGGTGATGCTTGAAACAGTGC    532
                     |        .|||||   .|||||.|||||.||.||||||||.||.||||
RBAM_011220__    494 A--------AGAGGA---TGATATCGCCGCCGTCATGCTTGAGACGGTGC    532

BSNT_01882___    533 AGGGAGAAGGAGGAGTCAAT-CCGGCGAGTGCTGAATTTTTATC--AGCC    579
                     ||||||||||.||||||||| |||.||| |.|.|||  ||.|||  ||||
RBAM_011220__    533 AGGGAGAAGGGGGAGTCAATCCCGCCGA-TCCGGAA--TTCATCGAAGCC    579

BSNT_01882___    580 GTACAGTCGTTTTGCAAGGAAAAGCAAGCCCTTCTCATCATTGATGAAAT    629
                     .|||||.|.||||||||.||.||.||.||.||.||.|||...||.||.||
RBAM_011220__    580 TTACAGACATTTTGCAAAGACAAACAGGCGCTGCTTATCGCAGACGAGAT    629

BSNT_01882___    630 CCAGACCGGCATCGGACGGACGGGAAAAGGC-TTCGCATATGAGCACTTC    678
                     .||.|||||.|||||.|||||||| .||||| ||||..||||||||.|||
RBAM_011220__    630 TCAAACCGGAATCGGCCGGACGGG-CAAGGCATTCGGCTATGAGCATTTC    678

BSNT_01882___    679 GGACTCTCACCGGATATCATCACAGTCGCCAAAGGATTGGGAAACGGCTT    728
                     ||..||||.|||||.||||||||.|..||.|||||..|.||||||||.||
RBAM_011220__    679 GGCATCTCGCCGGACATCATCACTGCTGCGAAAGGGCTTGGAAACGGTTT    728

BSNT_01882___    729 TCCGGTCGGCGCTGTCATTGGAAAAAAACAGCTTGGAGAAGCGTTTACCC    778
                     |||.|||||.||.||.||.||.|||||..||||||||||.||.|||||.|
RBAM_011220__    729 TCCCGTCGGAGCCGTGATCGGCAAAAAGAAGCTTGGAGACGCCTTTACGC    778

BSNT_01882___    779 CTGGTTCTCACGGAACGACTTTCGGAGGAAATATGCTGGCGATGGCTGCT    828
                     |.|||.|.||.||.|||||||||||.||.||||.|||.||.|||||.|||
RBAM_011220__    779 CGGGTACGCATGGTACGACTTTCGGCGGCAATAAGCTTGCCATGGCAGCT    828

BSNT_01882___    829 GTGAATGCCACATTGCAAATTGTATTCCAGCCTGACTTTTTGCAAGAGGC    878
                     |||||.||.||.|||.|.|||||.||.|||||.||||||.|.||.|.|||
RBAM_011220__    829 GTGAAAGCAACCTTGGATATTGTGTTTCAGCCGGACTTTCTCCAGGCGGC    878

BSNT_01882___    879 TGCTGATAAAGGGGCGTTTTTAAAAGAACAGCTTGAGGCG-GAGCT-AAA    926
                     .||.||.|||||..|.||||||||||..|||| |||..|| ||.|| |.|
RBAM_011220__    879 GGCAGACAAAGGATCATTTTTAAAAGCGCAGC-TGAACCGTGAACTGACA    927

BSNT_01882___    927 GAGCCCTTTTGTTAAACAAATCCGAGGTAAAGGATTAATGCTTGGAATTG    976
                     | |.||||||||.|||.|||||||.||.|||||.|||.|..|.||.||||
RBAM_011220__    928 G-GGCCTTTTGTAAAAGAAATCCGCGGAAAAGGGTTATTAATCGGCATTG    976

BSNT_01882___    977 AGTGTGATGGCCCGGTTGCTGACATTATTGCTGAATTGCAG--ACATTAG   1024
                     |.||.|..||.||.||..|.|.|||.||.|..||..|||||  || ...|
RBAM_011220__    977 AATGCGCAGGTCCCGTGTCCGGCATCATCGGAGATCTGCAGGAAC-GCGG   1025

BSNT_01882___   1025 GCTTGCTTGTATTGCCGGCCGGCCCGAACGTGATTCGGCTGCTGCCGCCG   1074
                     |||| ||.||..|.||||||||.|||||.||.||..|||||||.||||||
RBAM_011220__   1026 GCTT-CTCGTGCTTCCGGCCGGACCGAATGTCATCAGGCTGCTCCCGCCG   1074

BSNT_01882___   1075 CTCACCGTGACTAAGGATGAAATAGCAG-AAGCCGTCAGCAAGCTGAAA-   1122
                     ||.||.||..||.|.||.||||| ||.| ..||||||||.|.||||||| 
RBAM_011220__   1075 CTTACGGTTTCTGAAGAAGAAAT-GCTGTCGGCCGTCAGTATGCTGAAAG   1123

BSNT_01882___   1123 CAGGCAATCGCTCATCATTCCGCTGTAAACCAGTGA   1158
                     || ||.||||.....|||||.||.||.||.|.||.|
RBAM_011220__   1124 CA-GCGATCGAAGCGCATTCGGCAGTGAAACGGTAA   1158


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