Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01877 and RBAM_011180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_01877.1.9828.seq
# -bsequence dna-align/RBAM_011180___yitZ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01877-RBAM_011180___yitZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01877-RBAM_011180___yitZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01877
# 2: RBAM_011180___yitZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 558
# Identity: 264/558 (47.3%)
# Similarity: 264/558 (47.3%)
# Gaps: 216/558 (38.7%)
# Score: 898.5
#
#
#=======================================
BSNT_01877 1 ATGGGGAAA---AACAAATTAAAATGGCTGACATTATCACAAAGCAGCGT 47
|| |||| |||.|.|||||||||||||...|.|||||.|||||.||
RBAM_011180__ 1 AT---GAAACACAACCATTTAAAATGGCTGATCCTGTCACAGAGCAGTGT 47
BSNT_01877 48 GTTTTTCGCAAGCAGCTTAATCTTTCCGTTTTATATTCTGTTTGTGAAAA 97
.|||||.||..|||||.|.||||||||.|||||||||.|.|||.|.||||
RBAM_011180__ 48 CTTTTTTGCCGGCAGCCTGATCTTTCCATTTTATATTTTATTTATTAAAA 97
BSNT_01877 98 ATATCGGCTCAAGCTACACACAGTTCGGTTTTTCCTACGGATTGTTCGGG 147
|.|||||.||.||||||||.||.||||||.|.||.|||||.|||||.||.
RBAM_011180__ 98 ACATCGGTTCCAGCTACACGCAATTCGGTCTCTCATACGGCTTGTTTGGC 147
BSNT_01877 148 TTGAGCGGAGCGCTCATTTACCCGCTCCTCGGACGGCTGTCTGAAAGGTT 197
||||||||.||..|.|||.|.|||||.|||||.||||||||.|.|||..|
RBAM_011180__ 148 TTGAGCGGCGCATTGATTCATCCGCTGCTCGGCCGGCTGTCGGCAAGACT 197
BSNT_01877 198 TGACAGCCGTTATTTTCTG----CTTCTG---AACTCGTGGGGGATGGCT 240
.||...||| ||| |||.|| ||.||||||||||||||.
RBAM_011180__ 198 GGATTCCCG-------CTGGTTCCTTATGGCAAATTCGTGGGGGATGGCG 240
BSNT_01877 241 GTTCTGCTTTTATATG-TCCCGCATATTGGAAGCGTCGT---TCAAGTGT 286
||.||.|||.| .|.| |||||||.||| |.||.||| .||.||.|
RBAM_011180__ 241 GTGCTTCTTCT-GACGCTCCCGCACATT---ACCGGCGTACACCAGGTTT 286
BSNT_01877 287 ATATCGTCCAAGTGCTGTTAGGGCTCTTTGGAGCGATGCAAAAGCATGGA 336
||.|.||.||.|||||.||.||.||.||.||.|||||||||||.||.||.
RBAM_011180__ 287 ATGTTGTGCAGGTGCTTTTGGGCCTGTTCGGCGCGATGCAAAAACACGGC 336
BSNT_01877 337 GAAAAAAGTGCTGATCGCTAA----------------------------- 357
||.|||| |..|||||||..|
RBAM_011180__ 337 GAGAAAA-TCATGATCGCCGATTACACCGACGGCGGGGAGCGGGGAAAAA 385
BSNT_01877 357 -------------------------------------------------- 357
RBAM_011180__ 386 AAGTCGGCAGCTATCATTTCTGGACGGCCGTATTTTCAGCTGCCGCCATT 435
BSNT_01877 357 -------------------------------------------------- 357
RBAM_011180__ 436 ATTCTCGGCGGGTTTCTCGCTGATTTCTTTACGGTTTATATTATTTTTTA 485
BSNT_01877 357 -------------------------------------------------- 357
RBAM_011180__ 486 CGCCAGCTCCGTGCTGTTTTTTATAAGCGGGCTGATGATGCTGAAAAAAA 535
BSNT_01877 357 -------- 357
RBAM_011180__ 536 CAGGCTGA 543
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