Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01877 and RBAM_011180

See Amino acid alignment / Visit BSNT_01877 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:36
# Commandline: needle
#    -asequence dna-align/BSNT_01877.1.9828.seq
#    -bsequence dna-align/RBAM_011180___yitZ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01877-RBAM_011180___yitZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01877-RBAM_011180___yitZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01877
# 2: RBAM_011180___yitZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 558
# Identity:     264/558 (47.3%)
# Similarity:   264/558 (47.3%)
# Gaps:         216/558 (38.7%)
# Score: 898.5
# 
#
#=======================================

BSNT_01877         1 ATGGGGAAA---AACAAATTAAAATGGCTGACATTATCACAAAGCAGCGT     47
                     ||   ||||   |||.|.|||||||||||||...|.|||||.|||||.||
RBAM_011180__      1 AT---GAAACACAACCATTTAAAATGGCTGATCCTGTCACAGAGCAGTGT     47

BSNT_01877        48 GTTTTTCGCAAGCAGCTTAATCTTTCCGTTTTATATTCTGTTTGTGAAAA     97
                     .|||||.||..|||||.|.||||||||.|||||||||.|.|||.|.||||
RBAM_011180__     48 CTTTTTTGCCGGCAGCCTGATCTTTCCATTTTATATTTTATTTATTAAAA     97

BSNT_01877        98 ATATCGGCTCAAGCTACACACAGTTCGGTTTTTCCTACGGATTGTTCGGG    147
                     |.|||||.||.||||||||.||.||||||.|.||.|||||.|||||.||.
RBAM_011180__     98 ACATCGGTTCCAGCTACACGCAATTCGGTCTCTCATACGGCTTGTTTGGC    147

BSNT_01877       148 TTGAGCGGAGCGCTCATTTACCCGCTCCTCGGACGGCTGTCTGAAAGGTT    197
                     ||||||||.||..|.|||.|.|||||.|||||.||||||||.|.|||..|
RBAM_011180__    148 TTGAGCGGCGCATTGATTCATCCGCTGCTCGGCCGGCTGTCGGCAAGACT    197

BSNT_01877       198 TGACAGCCGTTATTTTCTG----CTTCTG---AACTCGTGGGGGATGGCT    240
                     .||...|||       |||    |||.||   ||.||||||||||||||.
RBAM_011180__    198 GGATTCCCG-------CTGGTTCCTTATGGCAAATTCGTGGGGGATGGCG    240

BSNT_01877       241 GTTCTGCTTTTATATG-TCCCGCATATTGGAAGCGTCGT---TCAAGTGT    286
                     ||.||.|||.| .|.| |||||||.|||   |.||.|||   .||.||.|
RBAM_011180__    241 GTGCTTCTTCT-GACGCTCCCGCACATT---ACCGGCGTACACCAGGTTT    286

BSNT_01877       287 ATATCGTCCAAGTGCTGTTAGGGCTCTTTGGAGCGATGCAAAAGCATGGA    336
                     ||.|.||.||.|||||.||.||.||.||.||.|||||||||||.||.||.
RBAM_011180__    287 ATGTTGTGCAGGTGCTTTTGGGCCTGTTCGGCGCGATGCAAAAACACGGC    336

BSNT_01877       337 GAAAAAAGTGCTGATCGCTAA-----------------------------    357
                     ||.|||| |..|||||||..|                             
RBAM_011180__    337 GAGAAAA-TCATGATCGCCGATTACACCGACGGCGGGGAGCGGGGAAAAA    385

BSNT_01877       357 --------------------------------------------------    357
                                                                       
RBAM_011180__    386 AAGTCGGCAGCTATCATTTCTGGACGGCCGTATTTTCAGCTGCCGCCATT    435

BSNT_01877       357 --------------------------------------------------    357
                                                                       
RBAM_011180__    436 ATTCTCGGCGGGTTTCTCGCTGATTTCTTTACGGTTTATATTATTTTTTA    485

BSNT_01877       357 --------------------------------------------------    357
                                                                       
RBAM_011180__    486 CGCCAGCTCCGTGCTGTTTTTTATAAGCGGGCTGATGATGCTGAAAAAAA    535

BSNT_01877       357 --------    357
                             
RBAM_011180__    536 CAGGCTGA    543


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