Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01876 and RBAM_011170

See Amino acid alignment / Visit BSNT_01876 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:36
# Commandline: needle
#    -asequence dna-align/BSNT_01876___yitY.1.9828.seq
#    -bsequence dna-align/RBAM_011170___yitY.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01876___yitY-RBAM_011170___yitY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01876___yitY-RBAM_011170___yitY.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01876___yitY
# 2: RBAM_011170___yitY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1497
# Identity:    1070/1497 (71.5%)
# Similarity:  1070/1497 (71.5%)
# Gaps:         138/1497 ( 9.2%)
# Score: 3743.0
# 
#
#=======================================

BSNT_01876___      1 ------------TTGCTT-------------GCATTCGCGCTTTGTACTG     25
                                 ||.|||             ||||||..| |||.||| |
RBAM_011170__      1 ATGAAGAAAAAATTACTTCTCATTATCCTTAGCATTCTTG-TTTATAC-G     48

BSNT_01876___     26 GCGCGTATGCGGCCCTGTTTGCGTACTCTGTGAACTCAGA------GCAA     69
                     |||| |.|.||   ||||||.||    ||.|..||..|||      |||.
RBAM_011170__     49 GCGC-TGTTCG---CTGTTTCCG----CTTTTCACAAAGAGCCGGTGCAG     90

BSNT_01876___     70 AAAACAGACACAAGCGAGATGACGGATGTCAGCGGCCTGATGCCTGTAAA    119
                     .|..|||..|||      |||||.|||||||||.|.||.|||||.||.||
RBAM_011170__     91 CAGGCAGGGACA------ATGACAGATGTCAGCCGTCTCATGCCCGTGAA    134

BSNT_01876___    120 AATAAAGCAGACAGTGAAAGGGCAGGAAGAGGAAACGCTCATT----GAC    165
                     |||.||||||||.||.|||||..|.||..|.||||    ||||    ||.
RBAM_011170__    135 AATTAAGCAGACGGTCAAAGGAAAAGAGAAAGAAA----CATTGGTCGAA    180

BSNT_01876___    166 ACAGTCAAAGAGGCAAATCGAAAAAACA--TAAAAATTTCAATCGCCGGG    213
                     ||..|.||.||.|||||  ||.|||.||  |.||.||.||||||||.||.
RBAM_011170__    181 ACGATTAAGGAAGCAAA--GAGAAAGCATCTGAAGATCTCAATCGCAGGC    228

BSNT_01876___    214 GCCCAGCACTCCATGGGCGGCCATACATATTATGAGGACGGCATCGTTCT    263
                     |||||||||||.|||||||||||.||.||||||||.|||||.||||||||
RBAM_011170__    229 GCCCAGCACTCAATGGGCGGCCAGACGTATTATGAAGACGGTATCGTTCT    278

BSNT_01876___    264 CGACATGACGGGCTACAACAAAATCCT--GTCACTCGATCAAGAGAAGAA    311
                     ||||||||||||||||||||||||.||  ||  |||||.|.|.||||.||
RBAM_011170__    279 CGACATGACGGGCTACAACAAAATACTCGGT--CTCGACCGAAAGAAAAA    326

BSNT_01876___    312 AACCATCAGGGTGCAAAGC-GGTGCAACGTGGAATGATATCCAGAAATAC    360
                     ||.||||||.|||| |.|| ||.||.||||||||||||||.|||...||.
RBAM_011170__    327 AATCATCAGAGTGC-AGGCGGGAGCGACGTGGAATGATATTCAGCGCTAT    375

BSNT_01876___    361 GTGAATCCATACGGACTCGCGGTAAAAGTCATGCAGTCACAAAACATTTT    410
                     ||.|||||.|||||.||||||||||||||||||||.||.|||||||||||
RBAM_011170__    376 GTCAATCCGTACGGGCTCGCGGTAAAAGTCATGCAATCGCAAAACATTTT    425

BSNT_01876___    411 TACAATCGGCGGATCTCTCAGCGCAAATGCACACGGACGTGATATTCGCT    460
                     |||.||||||||.||.||.|||||.||.||.|||||.||.|||||.||.|
RBAM_011170__    426 TACGATCGGCGGCTCACTGAGCGCCAACGCCCACGGCCGGGATATCCGGT    475

BSNT_01876___    461 ACGGCTCGCTGATTGATACAGTCAAATCATTTCGGCTTTTAAAAGCTGAC    510
                     ||||.||||||||||||||.||||||||.||||..||||||||.||.|||
RBAM_011170__    476 ACGGTTCGCTGATTGATACGGTCAAATCGTTTCATCTTTTAAAGGCGGAC    525

BSNT_01876___    511 GGGACGATTATCACTGTCACTCCAAAAGATGATTTGTTTACGGCGGTCAT    560
                     ||.|...|.|||||.||.|||||.||||||||..|||||.|.||.|||||
RBAM_011170__    526 GGCAAAGTCATCACCGTTACTCCGAAAGATGACCTGTTTTCAGCCGTCAT    575

BSNT_01876___    561 CGGAGGGTACGGCCTTTTTGGCGTGATTCTTGATGTAACGC-----TTGA    605
                     |||.||.||||||||.||.|||||.||.||.|     ||||     ||||
RBAM_011170__    576 CGGCGGCTACGGCCTGTTCGGCGTCATCCTGG-----ACGCGGATATTGA    620

BSNT_01876___    606 GCTGACAGATGATGAGCTGTATGTCATGAAGACAGAAA-AAATGAATTAC    654
                     ||||||.|||||||||||.||||..|||||.|| |||| ..|||||    
RBAM_011170__    621 GCTGACGGATGATGAGCTTTATGAAATGAAAAC-GAAACGCATGAA----    665

BSNT_01876___    655 AGC----ACATACTCAG--ACTATTTTTCAAAGCATGTAAAAGGAAATCC    698
                     .||    |||||  |||  |.||||||.|..|||||||.....|.||.||
RBAM_011170__    666 CGCTGATACATA--CAGTCAATATTTTACGCAGCATGTTCGGCGCAACCC    713

BSNT_01876___    699 AGATGTCCGAATGCATCTGGCGCGAATTTCAACAGCGAAAAAAGGATTTC    748
                     .|..||.||.||||||||.|||||.||..||||||.|.|.|||||.|||.
RBAM_011170__    714 CGCCGTGCGCATGCATCTCGCGCGGATCGCAACAGGGGATAAAGGCTTTT    763

BSNT_01876___    749 TGAAAGACATGTATGTCACGAATTACGTATTGGCTGATCATCAGGATCAA    798
                     ||.|.||.||||||||.||..|||||..|.|..|.||..|||||.|..||
RBAM_011170__    764 TGCACGATATGTATGTGACTGATTACACACTCTCAGACAATCAGAAAGAA    813

BSNT_01876___    799 ------CTGCCATCATACAGCGATCTCAAAGAAGATGAGTATACGGGAGC    842
                           |.||      |||..||.||.||||||||||||.|| |.||.||
RBAM_011170__    814 TTAAAGCGGC------ACAATGAACTGAAAGAAGATGAGCAT-CCGGCGC    856

BSNT_01876___    843 -CACAAAGTTTGCACTCGGTTTGTCAAGACGGTATGAATGGGGCAGGAAT    891
                      .||.||.||.||.|||||..|.||..|.||||||||.|||||.||.|||
RBAM_011170__    857 TGACGAAATTCGCGCTCGGCCTCTCCCGCCGGTATGACTGGGGAAGAAAT    906

BSNT_01876___    892 TGGCTGTGGGACACACAGCAATCCTATTTCCTGAGCCAAAACGGCACAGA    941
                     |||.|.|||...||.|||||.||.|||||.||.||||||||||||   |.
RBAM_011170__    907 TGGTTCTGGTCAACCCAGCAGTCTTATTTTCTCAGCCAAAACGGC---GT    953

BSNT_01876___    942 GA---TTTCACGCAATAACGTCATGCGGTCCGAATCAAAGTTTCTTGAGT    988
                     ||   |.||..|.||.||.|||||||||||.|||||.||.|||.|.||.|
RBAM_011170__    954 GAAAGTCTCCAGGAACAATGTCATGCGGTCAGAATCGAAATTTTTGGAAT   1003

BSNT_01876___    989 ATGAAAACAATGACAACACAGATGTTTTGCAAGAATACTTTGTGCCCGT-   1037
                     |||||||||..||||||||.||.||..|||||||||||||.|||||||| 
RBAM_011170__   1004 ATGAAAACACGGACAACACCGACGTGCTGCAAGAATACTTCGTGCCCGTC   1053

BSNT_01876___   1038 ---GAAGGAGTATGGGTCCTATATTGATGACCTGAGACAA-ACGCTGTCG   1083
                        |||    |.||.|.|.||.|||.|||| .|.|..||| ||||||||.
RBAM_011170__   1054 GGCGAA----TTTGCGCCGTACATTCATGA-TTTACGCAAGACGCTGTCA   1098

BSNT_01876___   1084 GACGAAGATCTGAACCTGCTGAACATTACGATCCGCTACGTGCAGAAAAA   1133
                     .|.||||||||.||.||..|.||.||||||||||||||||||||.|||||
RBAM_011170__   1099 CATGAAGATCTCAATCTCGTAAATATTACGATCCGCTACGTGCAAAAAAA   1148

BSNT_01876___   1134 TGAAAAGGCCGACCTTTCCTATGCGAAGGACGATATGTTTTCGCTCGTGC   1183
                     ||||||.|||||.||.||.||.||.|||||.||.||||||||.|||||.|
RBAM_011170__   1149 TGAAAAAGCCGATCTGTCATACGCAAAGGAAGACATGTTTTCACTCGTTC   1198

BSNT_01876___   1184 TATTAATAAACGAGGGCTTTTCAAAAGA-AGACCAGGCAGA-TACTGCCC   1231
                     |.|||||.|||||.||.||||||||||| || |||||| || ..|.||.|
RBAM_011170__   1199 TTTTAATCAACGAAGGGTTTTCAAAAGACAG-CCAGGC-GAGCGCGGCGC   1246

BSNT_01876___   1232 GAATCATCAGGCACATGACAGA-----CGTTGCCATCAAG-CACGGCGGC   1275
                     |.||..||||..|.|||||.||     |.||||      | |||.|||||
RBAM_011170__   1247 GGATTGTCAGAAAAATGACGGATACGGCATTGC------GCCACCGCGGC   1290

BSNT_01876___   1276 AGCTATTATCTGCCTTATATGACCTACCAGACAAAAGCGCAAATGAGACA   1325
                     ||.||||||||.||.||||||...||.||.||.||||.|||.|||.|..|
RBAM_011170__   1291 AGTTATTATCTCCCGTATATGCTGTATCAAACGAAAGAGCAGATGCGCGA   1340

BSNT_01876___   1326 GGCATATCCGAAAAGTGAAGCGTTTTTTCAGAAAAAACGAACCTATGACC   1375
                     |||||||||||||||.||...|||.|||||||||||||..|..|||||.|
RBAM_011170__   1341 GGCATATCCGAAAAGCGATATGTTCTTTCAGAAAAAACACAAATATGATC   1390

BSNT_01876___   1376 CGGATGAGCGCTTTATGAATTACTTTTATCAGAGGTATAAATAA---   1419
                     |||||||....|||||||||||.||||||||||||||.||||.|   
RBAM_011170__   1391 CGGATGACTTGTTTATGAATTATTTTTATCAGAGGTACAAATCATGA   1437


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