Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01871 and RBAM_011150

See Amino acid alignment / Visit BSNT_01871 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:35
# Commandline: needle
#    -asequence dna-align/BSNT_01871___yitW.1.9828.seq
#    -bsequence dna-align/RBAM_011150___yitW.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01871___yitW-RBAM_011150___yitW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01871___yitW-RBAM_011150___yitW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01871___yitW
# 2: RBAM_011150___yitW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 309
# Identity:     258/309 (83.5%)
# Similarity:   258/309 (83.5%)
# Gaps:           0/309 ( 0.0%)
# Score: 1086.0
# 
#
#=======================================

BSNT_01871___      1 GTGGAAGAAGCATTAAAAGAAAACATCATGGGCGCCCTGGAACAGGTTGT     50
                     ||||||||||||||||||||||||||||||||||||.||||.||||||||
RBAM_011150__      1 GTGGAAGAAGCATTAAAAGAAAACATCATGGGCGCCTTGGAGCAGGTTGT     50

BSNT_01871___     51 CGATCCTGAGCTTGGCGTTGATATCGTGAACCTTGGTTTGGTATACGATG    100
                     .||.||||||||.|||||.||||||||.||.||.||..|.||||||||.|
RBAM_011150__     51 TGACCCTGAGCTCGGCGTCGATATCGTCAATCTCGGCCTTGTATACGACG    100

BSNT_01871___    101 TTGACATGGATGAAGACGGCTTAACGCACGTGACGATGACACTGACATCA    150
                     ||||.||||||||.||||||.|.||||||||.||||||||||||||||||
RBAM_011150__    101 TTGATATGGATGACGACGGCCTGACGCACGTTACGATGACACTGACATCA    150

BSNT_01871___    151 ATGGGATGCCCTTTAGCGCCGATTATCGTGGATGAGGTGAAAAAAGCATT    200
                     |||||.|||||..|.||.|||||.|||||.||.||||||||||||||..|
RBAM_011150__    151 ATGGGGTGCCCGCTCGCTCCGATCATCGTCGACGAGGTGAAAAAAGCGCT    200

BSNT_01871___    201 AGCGGACCTTCCTGAAGTGAAAGACACAGAGGTTCACATTGTATGGAATC    250
                     .||.|||.||||.||.||.|||||.||.|||||.|||||.||.|||||||
RBAM_011150__    201 CGCCGACATTCCGGATGTAAAAGAGACGGAGGTCCACATCGTCTGGAATC    250

BSNT_01871___    251 CGCCTTGGACTAGGGATAAAATGTCCAGATACGCAAAAATTGCGCTTGGC    300
                     ||||||||||.||.||.||||||||..|.|||||||||||.||..|.||.
RBAM_011150__    251 CGCCTTGGACAAGAGACAAAATGTCACGCTACGCAAAAATCGCATTAGGG    300

BSNT_01871___    301 ATTCAATAA    309
                     |||||.|||
RBAM_011150__    301 ATTCAGTAA    309


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