Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01869 and RBAM_011130

See Amino acid alignment / Visit BSNT_01869 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:35
# Commandline: needle
#    -asequence dna-align/BSNT_01869___yitU.1.9828.seq
#    -bsequence dna-align/RBAM_011130___yitU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01869___yitU-RBAM_011130___yitU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01869___yitU-RBAM_011130___yitU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01869___yitU
# 2: RBAM_011130___yitU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 828
# Identity:     629/828 (76.0%)
# Similarity:   629/828 (76.0%)
# Gaps:          30/828 ( 3.6%)
# Score: 2330.5
# 
#
#=======================================

BSNT_01869___      1 ATGGAGACAAAACCCTATTTAATCGCATTAGATTTAGATGGAACATTATT     50
                     ||||||||||||||.|||.|.|||||.||||||.|.||||||||.|||||
RBAM_011130__      1 ATGGAGACAAAACCTTATCTCATCGCCTTAGATCTGGATGGAACTTTATT     50

BSNT_01869___     51 AAAGGATGATAAAACCATAT---CTGAAA--ACACCCTTCAGACGATACA     95
                     |||.||.|||||||||||.|   ||||||  .||     |.||||||.||
RBAM_011130__     51 AAAAGACGATAAAACCATTTCCCCTGAAACGGCA-----CGGACGATTCA     95

BSNT_01869___     96 GCGCCTAAAAGATGACGGG-CATTATGTCTGCATCTCAACGGGGCGTCCG    144
                     |...||.|||||.| |||| |||.||||||||||||||||.|||||.||.
RBAM_011130__     96 GAAGCTGAAAGAAG-CGGGCCATCATGTCTGCATCTCAACCGGGCGCCCT    144

BSNT_01869___    145 TACCGTTCAAGTTCCATGTACTACCAGCAGATGGAACTGACAACGCCGAT    194
                     |.||||||.|||||.|||||.||..|..||.|.|..||||||||||||||
RBAM_011130__    145 TTCCGTTCCAGTTCGATGTATTATGACGAGCTTGGGCTGACAACGCCGAT    194

BSNT_01869___    195 TGTCAATTTTAACGGAGCATTTGTCCATCATCCGCAGGACGA--CAGCTG    242
                     |||||||||||||||.|||||||||||.||.|||.|.|||||  ||  ||
RBAM_011130__    195 TGTCAATTTTAACGGGGCATTTGTCCACCACCCGAAAGACGAATCA--TG    242

BSNT_01869___    243 GGGACGGTATCATACGTCACTCCCGCTTGATGTTGTCAAACAGCTCGTGG    292
                     ||||||.||.||.|||||..|..||.|.|||||.||||.||||||.|..|
RBAM_011130__    243 GGGACGCTACCACACGTCTTTATCGGTCGATGTGGTCAGACAGCTTGCCG    292

BSNT_01869___    293 ATATCAGCGAGAGCTA-CAACGTACATAATGTGCTTGCTGAAGTGATTGA    341
                     |..|.|..||||.||| ||| .|||||||||||||.|||||.||.|||||
RBAM_011130__    293 AACTTACAGAGACCTATCAA-ATACATAATGTGCTCGCTGAGGTCATTGA    341

BSNT_01869___    342 TGACGTATACTTTCATTACCATGATGAGCACCTGATTGATGCCTTTAACA    391
                     .||.||.|||||.|||||.|||||||||||..|.|||||.||.|||.|.|
RBAM_011130__    342 CGATGTGTACTTCCATTATCATGATGAGCATTTAATTGAGGCGTTTCATA    391

BSNT_01869___    392 TGAACACAACAAATGTAACGGTCGGAGACTTGCGGGAAAATCTTGGT---    438
                     ||||.||..|.|||||.||..||||.||..||||.||||    .|||   
RBAM_011130__    392 TGAATACGGCGAATGTCACATTCGGCGATCTGCGTGAAA----CGGTCAA    437

BSNT_01869___    439 -GAAGATGTGACGTCTGTACTCATACATGCAAAAGAAGAGGATGTGCCGG    487
                      ||.|||||.|||||.|||.|.||.||||||||.||||||||.||..|||
RBAM_011130__    438 GGAGGATGTAACGTCCGTATTGATTCATGCAAAGGAAGAGGACGTCGCGG    487

BSNT_01869___    488 CAATACGCTCATATTTATCGGATGTGCATGCCGAGGTAATCGACCATAGA    537
                     ..||||||.|..|||||||.||||||||.||||||||.||.|||||.|||
RBAM_011130__    488 ATATACGCGCGCATTTATCCGATGTGCACGCCGAGGTCATTGACCACAGA    537

BSNT_01869___    538 AGATGGGCCGCACCGTGGCATGTCATTGAAATTATCAAAAGCGGCATGAA    587
                     ||||||||.||.|||||||||||.||||||||.||.|||..|||.|||||
RBAM_011130__    538 AGATGGGCGGCTCCGTGGCATGTGATTGAAATCATTAAACACGGGATGAA    587

BSNT_01869___    588 TAAAGCGGTCGGCCTGCAGAAAATCAGCGATTATTACGGCCTGCCGAGGG    637
                     ||||||||||||||||.|||||||||||||.||||||....|||||||.|
RBAM_011130__    588 TAAAGCGGTCGGCCTGAAGAAAATCAGCGACTATTACCAAGTGCCGAGAG    637

BSNT_01869___    638 AGCGGATCATTGCTTTCGGGGATGAGGATAACGATTTGGAAATGCTTGAA    687
                     |.||||||||.||.|||||.||.||.||.||||||.|.||||||||....
RBAM_011130__    638 AACGGATCATCGCGTTCGGCGACGAAGACAACGATCTTGAAATGCTCCGG    687

BSNT_01869___    688 TTTGCAGGCTGCGGCGTTGCAATGGGAAATGGAATTGACGCGGTCAAGCA    737
                     |||||.||.||||||||.||.||||||||.||.|..||.|..|||||.||
RBAM_011130__    688 TTTGCCGGGTGCGGCGTAGCGATGGGAAACGGCACGGATGAAGTCAAACA    737

BSNT_01869___    738 GATTGCCAACCGAACAACGGCTACAAATGAAGAGGACGGCGTTGC--AAG    785
                     |...|||.||||....||||...|||||||||.||||||..|.||  || 
RBAM_011130__    738 GGCCGCCGACCGCGTCACGGGATCAAATGAAGCGGACGGAATCGCCGAA-    786

BSNT_01869___    786 GTTTTTGAAAGAATATTTCTCACTTTAA    813
                      |||||.|||...||||||||.||.|.|
RBAM_011130__    787 -TTTTTAAAATCCTATTTCTCCCTGTGA    813


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01869 and RBAM_011130

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
