Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00371 and RBAM_011070
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:08
# Commandline: needle
# -asequence dna-align/BSNT_00371___cypC.1.9828.seq
# -bsequence dna-align/RBAM_011070___cypC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00371___cypC-RBAM_011070___cypC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00371___cypC-RBAM_011070___cypC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00371___cypC
# 2: RBAM_011070___cypC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1308
# Identity: 900/1308 (68.8%)
# Similarity: 900/1308 (68.8%)
# Gaps: 111/1308 ( 8.5%)
# Score: 2926.0
#
#
#=======================================
BSNT_00371___ 1 ATGAATGAGCAGATTCCACATGACAAAAGTCTCGATAACAGTCTGAC--- 47
|||.||||.||.|||||.|||||.||..||||.|||||.||||||.|
RBAM_011070__ 1 ATGGATGAACAAATTCCGCATGAAAAGGGTCTTGATAATAGTCTGGCTTT 50
BSNT_00371___ 48 ---ACTGCTGAAGGAAGGGTATTTATTTATTAAAAACAGAACAGAGCGCT 94
|| || ||.||.|||.|||||.|.||||||.||.|.|||
RBAM_011070__ 51 ATTAC-GC-----GATGGTTATGTATTTGTGAAAAACCGAGCGGAG---- 90
BSNT_00371___ 95 ACAAT------TCAGATCTGTTTCAGGCCCGTTTGTT-GGGAAAAAACTT 137
||| ||.|||.||||||..||||||||.|| |||||.|.| ||
RBAM_011070__ 91 --AATTATCGCTCGGATGTGTTTCGCGCCCGTTTATTAGGGAAGACA-TT 137
BSNT_00371___ 138 TATTTGCATGACTGGCGCTGAGGCGGCGAAGGTGTTTTATGATACGGATC 187
.|||||.||||..||.||.||.||.||.|||.|.||||||||.||.||.|
RBAM_011070__ 138 CATTTGTATGAGCGGAGCGGAAGCCGCAAAGCTTTTTTATGACACAGAAC 187
BSNT_00371___ 188 GATTCCAGCGGCAGAACGCTTTGCCTAAGCGGGTGCAGAAATCGCTGTTT 237
||||.||||||.||.|.||..|.||.||.||||||||||||.||.|.||.
RBAM_011070__ 188 GATTTCAGCGGGAGCATGCCCTCCCCAAACGGGTGCAGAAAACGTTATTC 237
BSNT_00371___ 238 GGTGTTAA----TGCGATTCAGGGAATGGATGG-CAGCGCGCATATCCAT 282
|| || .||.||.||||.||||||.|| .|.|| |||||..||.
RBAM_011070__ 238 GG----AACAGGGGCAATCCAGGCAATGGACGGTGAACG-GCATAAGCAC 282
BSNT_00371___ 283 CGGAAGATGCTTTTTCTATCATTAATGACACCGCCGCATCAAAAACGTTT 332
.|||||.|.||.|||.|.||..|.|||||.|||||.|..||||||||..|
RBAM_011070__ 283 AGGAAGCTTCTATTTATGTCGCTGATGACGCCGCCCCGGCAAAAACGGCT 332
BSNT_00371___ 333 GGCTGAGTTGATGACAGAGGAGTGGAGAGCAGCAGTCACAAGATGGGAG- 381
.||.||...|.||.||.|..||||||.||||.|.|....||..||||||
RBAM_011070__ 333 TGCGGAAGCGGTGGCAAAACAGTGGAAAGCATCTGCGGAAATGTGGGAGG 382
BSNT_00371___ 382 ----AAAGCAGATGAGGTTGTGTTATTTGAAGAAGCAAAAGAAA-TCCTA 426
|||.|..| ||||..|.|||||.||||| .|||||| |.||.
RBAM_011070__ 383 GTTCAAACCGAA-----TTGTCCTTTTTGATGAAGC-GAAGAAAGTGCTG 426
BSNT_00371___ 427 TGCCGGGTAGCGTGCTATTGGGCAGGTGTTCCGTTGAAGGAAACGGAAGT 476
|||||||..||.||..|.|||||.||.||.|||.||||.||..|.|||||
RBAM_011070__ 427 TGCCGGGCTGCCTGTGAGTGGGCCGGCGTCCCGCTGAAAGACTCAGAAGT 476
BSNT_00371___ 477 CAAAGAGAGAGCGGCTGACTTCATTGACATGGTCGACGCGTTCGGTGCTG 526
.||||||.|.||||..||.||||..||.|||||.|||||.|||||.||||
RBAM_011070__ 477 GAAAGAGCGGGCGGAGGATTTCACCGATATGGTAGACGCATTCGGCGCTG 526
BSNT_00371___ 527 TGGGACCGCGGCATTGGAAGGGAAGAAGAGCAAGGCCACGTG----CGGA 572
|.||||||||.||||||||.||.|||||.||.|||| || ||||
RBAM_011070__ 527 TCGGACCGCGTCATTGGAAAGGCAGAAGGGCGAGGC----TGAAAACGGA 572
BSNT_00371___ 573 AGAGTGGATTGAAGTCATGATTGAAGATGCTCGTGCCGGCTTGCTGAAAA 622
..|.|||||.||.|...|.|||||.||||..||..|||||..||||.|||
RBAM_011070__ 573 GAAATGGATAGAGGAGGTCATTGAGGATGTGCGGTCCGGCAAGCTGCAAA 622
BSNT_00371___ 623 CGACTCCCGGA----ACAGCGCTGCATGAAATGGCTTTTCACACACAA-- 666
|| ||||| .||||..||.||||||||||||||||.|||.||
RBAM_011070__ 623 CG----CCGGAGGGCTCAGCCTTGTATGAAATGGCTTTTCATACAGAACT 668
BSNT_00371___ 667 -GAAGATGGAAGCCAG-CTGGATTCCCGCATGGCAGCCATTGAGCTGATT 714
||.| |||| ||| ||.|||||.|.||||||.||..|||||||.|||
RBAM_011070__ 669 TGACG--GGAA--CAGACTTGATTCTCACATGGCTGCTGTTGAGCTTATT 714
BSNT_00371___ 715 AATGTATTGCGGCCTATTGTCGCCATTTCTTACTTTCTGGTGTTTTCAGC 764
|||||..||||.||.||||.|||||||||||||||..|...|||||||||
RBAM_011070__ 715 AATGTTCTGCGCCCGATTGCCGCCATTTCTTACTTCATTACGTTTTCAGC 764
BSNT_00371___ 765 TTTGGCGCTTCATGAGCATCCGAAATATAAGG---AATGGCTGCGGTCTG 811
|.|.||..|.|||||..|.||..|||||..|| || |||.|.||..
RBAM_011070__ 765 TCTTGCATTGCATGATTACCCTGAATATCGGGGCAAA---CTGAGATCGA 811
BSNT_00371___ 812 GA----AACA----GCCGGAAAAGAGAAATGTTTGTGCAGGAGGTCCGCA 853
|| |.|| |||| ||||| ||||..||.||.||.||..
RBAM_011070__ 812 GAGATGATCAGGAGGCCG--AAAGA------TTTGCACATGAAGTTCGGC 853
BSNT_00371___ 854 GATATTATCCGTTCGGCCCGTTTTTAGGGGCGCTTGTCAAAAAAGATTTT 903
|.|||||.|||||.|.||||||||||||.||..||||.|||||||||||.
RBAM_011070__ 854 GGTATTACCCGTTTGCCCCGTTTTTAGGAGCCGTTGTGAAAAAAGATTTC 903
BSNT_00371___ 904 GTATGGAATAACTGTGAGTTTAAGAAGGGCACATCGGTGCTGCTTGATGT 953
||||||||.||||||||||||||.|||||..||||.||..|||||||..|
RBAM_011070__ 904 GTATGGAAGAACTGTGAGTTTAAAAAGGGTGCATCCGTCATGCTTGACCT 953
BSNT_00371___ 954 ATATGGAACGAACCACGACCCTCGTCTATGGGATCATCCCGATGAATTCC 1003
|||||||||.|||||.||..|.||.||.|||||..||||..|||||||.|
RBAM_011070__ 954 ATATGGAACAAACCATGATTCCCGGCTTTGGGAGAATCCGAATGAATTTC 1003
BSNT_00371___ 1004 GGCCTGAACGATTTGCGGAGCGGGAAGAAAATCCGTTTGATATGATTCCT 1053
|.||.|||||.|||..||.||||||.||||||...||||||.|.|||||.
RBAM_011070__ 1004 GCCCGGAACGTTTTCAGGGGCGGGAGGAAAATAAATTTGATTTCATTCCC 1053
BSNT_00371___ 1054 CAAGGCGGGGGGCACGTC--GAGAAAGGACACCGCTGTCCAGGGGAAGGC 1101
||.|||||.||..| || |..||.||.|||||||||||.||.||.||.
RBAM_011070__ 1054 CAGGGCGGAGGTGA--TCCGGCCAACGGCCACCGCTGTCCGGGTGAGGGA 1101
BSNT_00371___ 1102 ATTACAATTGAAGTCATGAAAGCGAGCCTGGATTTCCTCGTTCATCAGAT 1151
||.||..|.||||||||||||.|...|||.|..||.||.|...||.|.||
RBAM_011070__ 1102 ATGACCGTGGAAGTCATGAAAACTTCCCTTGCGTTTCTTGCCAATGAAAT 1151
BSNT_00371___ 1152 TGAATACGATGTTCCGGAACAA----TCACTGCATTACAGTCTCGCCAGA 1197
.||.||||||||||||...||| |.| || |.|||.||..|||||
RBAM_011070__ 1152 AGAGTACGATGTTCCGTCCCAAGATTTGA--GC--TTCAGCCTGTCCAGA 1197
BSNT_00371___ 1198 ATGCCGTCATTGCCTGAAAGCGGCTTTGTAATGAGCGGAATTAGACG-AA 1246
||||||.||||||||||||||||.||.||.||.||.|...||||||| |.
RBAM_011070__ 1198 ATGCCGGCATTGCCTGAAAGCGGATTCGTGATAAGTGATGTTAGACGCAT 1247
BSNT_00371___ 1247 AAAGTTAA 1254
|.||
RBAM_011070__ 1248 ATAG---- 1251
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