Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01859 and RBAM_011010

See Amino acid alignment / Visit BSNT_01859 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:34
# Commandline: needle
#    -asequence dna-align/BSNT_01859___yitI.1.9828.seq
#    -bsequence dna-align/RBAM_011010___yitI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01859___yitI-RBAM_011010___yitI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01859___yitI-RBAM_011010___yitI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01859___yitI
# 2: RBAM_011010___yitI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 473
# Identity:     323/473 (68.3%)
# Similarity:   323/473 (68.3%)
# Gaps:          55/473 (11.6%)
# Score: 998.5
# 
#
#=======================================

BSNT_01859___      1 ATGCTCGAAGTCAAAACCATTTCCGCGGAAGATACGTATGAAATCCGGCA     50
                     |||.|.|||||.|||.||||..||||.|||||.|||||.|..|||.|.||
RBAM_011010__      1 ATGGTTGAAGTAAAACCCATCACCGCAGAAGACACGTACGCGATCAGACA     50

BSNT_01859___     51 CCGCATTCTGCGTCCCCATCAATCCATTGAACAATGCAAATATGAAGAGG    100
                     |.||.|.|||||.||||||||..|.|||||..|.||.||||||||..|||
RBAM_011010__     51 CAGCGTGCTGCGCCCCCATCAGACGATTGAGGATTGTAAATATGATCAGG    100

BSNT_01859___    101 ATCATGCA-----AAAGGCTCCTTTCATCTCGGCGCGTTTTT-TGAAGGA    144
                     |     ||     |||||..|||||||||||||.| |||||| .||.||.
RBAM_011010__    101 A-----CAGCGTCAAAGGAGCCTTTCATCTCGGAG-GTTTTTACGACGGG    144

BSNT_01859___    145 AAGCTGATCAGCATCGCCTCTTTTTCCCCGCAAATTCAGC---CATTAAT    191
                     |...|||||||||||||.|||||.|.||||||.|..||||   |.||   
RBAM_011010__    145 ACATTGATCAGCATCGCTTCTTTCTACCCGCAGAACCAGCAGGCGTT---    191

BSNT_01859___    192 AACA-GAATCCCCAGCATATCGGCTGAGAGGCATGGCAACGCTTGTAGG-    239
                      ||| |.|.|.||.||.||.|.||||.|.||||||||.||||||| ||| 
RBAM_011010__    192 -ACAGGCAGCGCCCGCCTACCAGCTGCGCGGCATGGCGACGCTTG-AGGA    239

BSNT_01859___    240 ATATCG--CGATCAAAAAGGCGGG-AGCACGCTGATC----AAACACTCG    282
                     |||.||  ||  |||||| ||||| ||||||.|.|||    |..||    
RBAM_011010__    240 ATACCGGACG--CAAAAA-GCGGGAAGCACGTTAATCGCCTATGCA----    282

BSNT_01859___    283 GAAGAGAAACTGGCGGAGAACGGCGTTCAGGCG---GTCTGGTGCAATGC    329
                     |||..|||||||||.||.|..||.|   .||||   |||||||||||.||
RBAM_011010__    283 GAACGGAAACTGGCAGATATGGGGG---CGGCGCTTGTCTGGTGCAACGC    329

BSNT_01859___    330 CAGAAGCCATGTGAAAGGCTACTATTCAAAACTTGGGTGGGAAGAACTCG    379
                     ||||.|.||.||.||.||.||.||...|||.||.||.| ||||.|.||||
RBAM_011010__    330 CAGATGTCACGTAAAGGGATATTACGAAAAGCTCGGCT-GGAAAAGCTCG    378

BSNT_01859___    380 GCGAA--CCGTTTGAGATTCCCGGCATAGGCACTCATATTGTCATGTACA    427
                     | |.|  ||.|||||.||.||||||||.|||.|.|||.|..|||||||.|
RBAM_011010__    379 G-GCAGCCCCTTTGACATACCCGGCATCGGCCCGCATGTGATCATGTATA    427

BSNT_01859___    428 AAACACTAGGAACAAGCAGGTGA    450
                     ||       ||||..||  .|||
RBAM_011010__    428 AA-------GAACTCGC--CTGA    441


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