Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01795 and RBAM_010740
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:30
# Commandline: needle
# -asequence dna-align/BSNT_01795___yhjN.1.9828.seq
# -bsequence dna-align/RBAM_010740___yhjN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01795___yhjN-RBAM_010740___yhjN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01795___yhjN-RBAM_010740___yhjN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01795___yhjN
# 2: RBAM_010740___yhjN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1217
# Identity: 825/1217 (67.8%)
# Similarity: 825/1217 (67.8%)
# Gaps: 121/1217 ( 9.9%)
# Score: 2723.0
#
#
#=======================================
BSNT_01795___ 1 TTGAAGAAAGACGAAAATCTCCTCAAAGATCTATGGTTTA-TCGCAATCA 49
||||||||||||.||.|||||||.|..|||.|.||||||| ||.| ||||
RBAM_010740__ 1 TTGAAGAAAGACAAACATCTCCTTACGGATATCTGGTTTATTCTC-ATCA 49
BSNT_01795___ 50 GTGCAGCCGGGGGGTTTATTCTTTCATTAACCGGAATATCAATTGGATGG 99
||||.||.|||||||||.|||||||..|.||.||.||.||.||.|..|||
RBAM_010740__ 50 GTGCGGCAGGGGGGTTTCTTCTTTCGCTTACAGGGATGTCGATCGCCTGG 99
BSNT_01795___ 100 ATGATCGGAACACTGATTGTCGCCTGCTG---CCTCGCCATGA-TACGGC 145
|||.|||||||.||| |.||||.|||| ||||.|||||| .|.|.|
RBAM_010740__ 100 ATGCTCGGAACGCTG---GCCGCCGGCTGCATCCTCTCCATGACGAGGCC 146
BSNT_01795___ 146 CGGCATGGCTGATGATGGCACCAGACCAAAAAGGAATTAACCGACGATGG 195
|.|| ||||||.|.|||||.||.|||..||.|||.|||.||||..|||||
RBAM_010740__ 147 CCGC-TGGCTGTTCATGGCGCCTGACAGAAGAGGGATTCACCGCAGATGG 195
BSNT_01795___ 196 CTCGCCCTCGGG-CAGATGATCCTCGGCATCGAATTGGGCCAAAAGCTGA 244
||.| |..|||| ||.||||||||||||||||||.|.|||||.||.||||
RBAM_010740__ 196 CTTG-CGGCGGGACAAATGATCCTCGGCATCGAACTCGGCCAGAAACTGA 244
BSNT_01795___ 245 ATTTATCCGTTCTCTCTGTTCTCAAAGACCATTGGTTTTCAGTCGGCGTT 294
|..|.||||||||.||.|||.|....||.||||||.||.|.||.|||.|.
RBAM_010740__ 245 ACCTGTCCGTTCTGTCGGTTTTACGGGAGCATTGGCTTCCGGTAGGCTTC 294
BSNT_01795___ 295 ATGCTGATATTGTCTATCCTGCTGGC-CATGCTGTCAGGATATGTGCTTT 343
||||||||.||.||||||.||.|||| |.|| |.||.|||||||||||.|
RBAM_010740__ 295 ATGCTGATTTTCTCTATCGTGATGGCGCTTG-TTTCCGGATATGTGCTCT 343
BSNT_01795___ 344 GGCGTTTCAGCAAAACGGATATGATGACTAGCTTTGTCGGCACCGCTCCC 393
..||.||||||...|||||.||||||||.||||||||.|||||.||.||.
RBAM_010740__ 344 TTCGGTTCAGCCGGACGGACATGATGACAAGCTTTGTAGGCACGGCGCCG 393
BSNT_01795___ 394 GGCGGACTTTCCGCCATGCCGAGCATCGCACAGGAAGTAGGCGCCAATAC 443
|||||..|.|||||||||||..|.|||||.||||||||.|||||.||.||
RBAM_010740__ 394 GGCGGTTTATCCGCCATGCCCGGTATCGCCCAGGAAGTCGGCGCAAACAC 443
BSNT_01795___ 444 CGCTATAGTCAGCCTCGTTCAAATGATGCGTGTGCTGCTCGTGGTGCTTT 493
|||.||.||.|||||..||||..|||.|||.||.||..|.||.||..|..
RBAM_010740__ 444 CGCGATTGTAAGCCTTATTCAGCTGACGCGCGTCCTTTTGGTCGTCATGA 493
BSNT_01795___ 494 CCATTCCGTTTTTAGTCATTCTGATCTATACAAAACAAGATCGTACCGCA 543
|.||.||||||.|.||||||.|..|.|.|||.|||||| |.||
RBAM_010740__ 494 CAATACCGTTTCTCGTCATTTTCTTATTTACCAAACAA------AACG-- 535
BSNT_01795___ 544 AGTGCCGCAACAGAGA----------CAATTTCTTCTGCAACGACAGATT 583
||||.|| .||||.| |..||||..|.|.|.|..||.||.
RBAM_010740__ 536 -GTGCGGC-TCAGACATCAGCCGGAGCCGTTTCGGCAGGAGCTTCACATC 583
BSNT_01795___ 584 TTAGGCTCGCTCCCGTTTTGTGGACCGTC--ATTCTTATTCTCGCTGCCT 631
...|.||..|||||.|.||||..||.|.| || |||||.|.|||||||
RBAM_010740__ 584 CGGGCCTTACTCCCATCTTGTTAACGGCCGGAT--TTATTTTGGCTGCCT 631
BSNT_01795___ 632 GGGGAGCTT----GCAAAGCTGCGAAATTTTTAAAATTTCCAGCTCCATG 677
| |||| ||||||..||.|||....|.||||||||.||.||.||
RBAM_010740__ 632 G----GCTTGCAAGCAAAGGCGCAAAACGGCTGAAATTTCCCGCCCCTTG 677
BSNT_01795___ 678 GCTGCTCGGCAGCATGCTCGGTGTAGC---------AAT-----TGTACA 713
||||||||||||||||.||||.||.|| ||| |||.|.
RBAM_010740__ 678 GCTGCTCGGCAGCATGATCGGCGTTGCTGCTGCGGAAATCGGCGTGTCCG 727
BSNT_01795___ 714 TGTTGGCGGAGCTGCGGTGACAGGGC-ACGACATGATGGCATGGTGGCCG 762
..||||| |||| |.||||||.||||.|||||||||
RBAM_010740__ 728 CCTTGGC---------------GGGCAAAGACATGCTGGCCTGGTGGCCG 762
BSNT_01795___ 763 TCACAAGCTAACCATGTATCACAAGTATTTCTCGGGGCAACGATCGGCTC 812
.|..||||.|||||..|.||||||.|.||||||||.||.||.|||||.||
RBAM_010740__ 763 CCGGAAGCGAACCAGCTGTCACAAATTTTTCTCGGCGCCACAATCGGATC 812
BSNT_01795___ 813 TAAGATGTACAAAAGCATGTTTGCCGGCGTCACCCGTATTATCATCGTCG 862
.||.|||||||||||||||||..|||||||..|..|..|..|.|.|||||
RBAM_010740__ 813 AAAAATGTACAAAAGCATGTTCACCGGCGTGGCGAGAGTGCTGACCGTCG 862
BSNT_01795___ 863 GGTTTGTCTCGTCCGTCGGTTTAATCGCAGCAATGTTTTTGAGCGCCGTG 912
|.|||.|.||.||||||||.||||||||.||.|||.||.||||||| |
RBAM_010740__ 863 GATTTATTTCTTCCGTCGGATTAATCGCCGCCATGATTCTGAGCGC---G 909
BSNT_01795___ 913 AT---CGTTTCCGAGCTGACAGGAATTTCGCTCATCACTTCTGTACTGGC 959
|| .|||||..|..|.||.||.||.||..|.||.||.|||||.||.||
RBAM_010740__ 910 ATTGCGGTTTCTAAATTAACGGGCATCTCCATGATTACATCTGTTCTCGC 959
BSNT_01795___ 960 ATTTGCGCCCGGCGGGATTGCAGAGATGGCGACGACGTCAGTTACCATAC 1009
.|||.|.|||||||||||.||.|||||||||.||||.||..|.|||.|.|
RBAM_010740__ 960 CTTTTCTCCCGGCGGGATCGCCGAGATGGCGGCGACTTCGATCACCCTGC 1009
BSNT_01795___ 1010 ATGCTGATTCCACCTTTGTCGTTGCGGTTCAGGTCATTCGCGTCATTCTG 1059
|.|..||.||.||.||.|||||.|||||||||.||||.||..||.||||.
RBAM_010740__ 1010 ACGAAGACTCGACTTTCGTCGTCGCGGTTCAGATCATCCGGATCGTTCTC 1059
BSNT_01795___ 1060 GTTATTGCCCTGCTGCCGCCGTTTTATCGCCTGCTTCACCATCT---TCA 1106
||.||.|||.||||.|||||.||.|||||.|||||.|||||.|| |||
RBAM_010740__ 1060 GTCATCGCCATGCTTCCGCCCTTCTATCGGCTGCTGCACCACCTTTCTCA 1109
BSNT_01795___ 1107 TGGTGAAA-------------AAAAA-----GACAAAAAGAGCTCAATCA 1138
|.||||| |.|.| |.||.||||||....||.|
RBAM_010740__ 1110 -GCTGAAACGGGCACACGGCGAGAGAGGCCGGGCAGAAAGAGGAACATGA 1158
BSNT_01795___ 1139 GCGGCAGTAGTGCCTAG 1155
RBAM_010740__ 1158 ----------------- 1158
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