Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01784 and RBAM_010730

See Amino acid alignment / Visit BSNT_01784 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:29
# Commandline: needle
#    -asequence dna-align/BSNT_01784___yhjH.1.9828.seq
#    -bsequence dna-align/RBAM_010730___yhjH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01784___yhjH-RBAM_010730___yhjH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01784___yhjH-RBAM_010730___yhjH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01784___yhjH
# 2: RBAM_010730___yhjH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 568
# Identity:     365/568 (64.3%)
# Similarity:   365/568 (64.3%)
# Gaps:          86/568 (15.1%)
# Score: 1086.0
# 
#
#=======================================

BSNT_01784___      1 ATGAACA---------CAGATCATACAAAACGCAATCTTTTTGAATTGTA     41
                     .||.|||         ||||.|||.||||||.||...||.|||||     
RBAM_010730__      1 TTGGACAGAAGACAGCCAGACCATGCAAAACACATGATTCTTGAA-----     45

BSNT_01784___     42 TGCGGAGCTCA---------TTCATCAGCAGGAGAAATG---GGAG----     75
                         |.|||.|         ||||..|||||||||..||   ||||    
RBAM_010730__     46 ----GGGCTGACAGATATTTTTCACGAGCAGGAGAGGTGTCAGGAGGACA     91

BSNT_01784___     76 ---GGGC-TTATTAAAGCCTTTTTATCTGACGAATTGAGGAAGCTGGATG    121
                        |||| |..||   |.|       |.||||.||.||.||| ||...||
RBAM_010730__     92 TCAGGGCGTCGTT---GGC-------CGGACGGATGGACGAA-CTCCGTG    130

BSNT_01784___    122 TAGAGCACGGGAGTAAATCTCAATTGACGATGACAGAAATTCATGTTCTA    171
                     .|||..||||.|..||||..||.|||||..||||.||||||||..||.|.
RBAM_010730__    131 AAGAAAACGGAAAAAAATTACAGTTGACCTTGACGGAAATTCACATTTTG    180

BSNT_01784___    172 TCTTGTGTCGGGGACAATGAACCAATTAATGTCACGTCGATAGCAGAAAA    221
                     ||.|||.||||.||..|||||||.||.|||||||||||.|||||.|||||
RBAM_010730__    181 TCGTGTATCGGAGATCATGAACCGATCAATGTCACGTCAATAGCGGAAAA    230

BSNT_01784___    222 AATGAATACGACAAAAGCGACTGTATCACGCATCAGCACAAAATTGCTCG    271
                     ||||||.||||||||..||||.||.||..|.|.|.||.|.||.||..|.|
RBAM_010730__    231 AATGAAGACGACAAAGCCGACCGTGTCGAGAAGCTGCGCGAAGTTTTTGG    280

BSNT_01784___    272 GCGCAGGCTTCCTTCACAGAACACAGCTCAGCGATAATAAAAAGGAGGTC    321
                     ..||.|||||.||.|.|||.||.|.|||.|||||.||||||||.||.|||
RBAM_010730__    281 AAGCCGGCTTTCTGCGCAGGACCCGGCTGAGCGACAATAAAAAAGAAGTC    330

BSNT_01784___    322 TACTTCCGATTGACGCCTGCTGGAAAAAAGCTGCACAGTT---TGCA-CA    367
                     ||.|||||..||||.|||||.||.|||.|||||||   ||   |.|| ||
RBAM_010730__    331 TATTTCCGGCTGACTCCTGCCGGGAAAGAGCTGCA---TTCCCTTCATCA    377

BSNT_01784___    368 --AATATTATCA--TCAGAAGGCTGAACAGCGTTTTCTGTCATTTTTTGA    413
                       |||||.||.|  |.|.||     ||.||||..|..||.|.|||||.||
RBAM_010730__    378 TGAATATCATGAATTGATAA-----AAAAGCGGCTCTTGGCGTTTTTAGA    422

BSNT_01784___    414 CCGCTATACCGAGGAAGAGATTCTT-TTTGCGGAACGGCTGTTTCGGGAT    462
                     |||||||||.||.||||| |.|.|| |||||.|||||||||||.||.|||
RBAM_010730__    423 CCGCTATACAGATGAAGA-ACTGTTATTTGCTGAACGGCTGTTCCGTGAT    471

BSNT_01784___    463 CTGGTGA-CAAAATGGTATCCGTC-GTCAGAAGAAATTGAAGGGGGGCTT    510
                     || .|.| ||||.|||   |.||| ||      ||||.|..|.||.|   
RBAM_010730__    472 CT-TTCAGCAAACTGG---CGGTCTGT------AAATGGCGGCGGAG---    508

BSNT_01784___    511 CCTAGCATTTTTAAATAA    528
                        ||| |.||.||||||
RBAM_010730__    509 ---AGC-TGTTCAAATAA    522


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.