Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01781 and RBAM_010720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_01781___yhjG.1.9828.seq
# -bsequence dna-align/RBAM_010720___yhjG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01781___yhjG-RBAM_010720___yhjG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01781___yhjG-RBAM_010720___yhjG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01781___yhjG
# 2: RBAM_010720___yhjG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1657
# Identity: 989/1657 (59.7%)
# Similarity: 989/1657 (59.7%)
# Gaps: 335/1657 (20.2%)
# Score: 2607.5
#
#
#=======================================
BSNT_01781___ 1 ATGATGATGAAATATGAAGCAG--TG--ATTATAGGAGGAGGGCCGGTCG 46
|||||| |..||| || |||||.||.|||||.|||||||
RBAM_010720__ 1 ------ATGAAA----ACACAGGCTGCCATTATCGGGGGAGGTCCGGTCG 40
BSNT_01781___ 47 GATTTATGCTGGCTTCTGAGCTTGCGATGGCCGGAGTAGGAACATG--TG 94
|..|||||||.||.||.||.||.|||.|||||||||| |||.|.| ||
RBAM_010720__ 41 GGCTTATGCTTGCATCAGAACTGGCGCTGGCCGGAGT--GAAAACGACTG 88
BSNT_01781___ 95 TGATTGAACGGCTTGAA-AAACCTGTTCCGCATTCCAAGGCGTTGACGCT 143
|.||||||| |.||||| ||..|.||.||..|||||||.|||.|.|...|
RBAM_010720__ 89 TTATTGAAC-GATTGAAGAAGACGGTGCCATATTCCAAAGCGCTTATCAT 137
BSNT_01781___ 144 GCATCCCCGAACGCTGGAGCTTCTTGAGATGAGAGGGATTTTAGAGCGGT 193
||||||.||.||.||.||||||.|||..||||||||.||.||.||.||.|
RBAM_010720__ 138 GCATCCGCGCACACTTGAGCTTTTTGCCATGAGAGGCATATTGGAACGCT 187
BSNT_01781___ 194 TCGT----ATCCAAGGGAAGCAAGATACCTTCCGGACATTTTTCAATGCT 239
|..| | ||||||.| |||.|..|||||||.||||||||.|||||
RBAM_010720__ 188 TTTTGGAAA---AAGGGACG-AAGGTGTCTTCCGGCCATTTTTCCATGCT 233
BSNT_01781___ 240 GGATACCCGTCTGGATTTTTC-AGGCTTGGATACG-AGCTGTCCTTACAC 287
||||||.||.||||||||||| .||| |||||||| |||.| ..|||..|
RBAM_010720__ 234 GGATACACGGCTGGATTTTTCTCGGC-TGGATACGAAGCAG-AATTATTC 281
BSNT_01781___ 288 GCTTTTGCTCCCGCAGTCAAAAACAGAAAAGCTGCTT---GAAGATCATG 334
|.|..||||.||.|||.||.||||.| |||.|.|| ||.||..|||
RBAM_010720__ 282 GTTAATGCTGCCTCAGGCAGAAACGG---AGCGGATTTTGGAGGAGTATG 328
BSNT_01781___ 335 CACGAAGCCTGGGAACAGAGGTGTTTCGGGGTGCAGAGGCGCTGGCGGTT 384
||..|||.||.||..||||..|..|.||.||.||.||.|||.||||.||.
RBAM_010720__ 329 CATCAAGTCTCGGCGCAGACATCATCCGCGGGGCGGAAGCGGTGGCTGTC 378
BSNT_01781___ 385 ACGCAAA------ACGGGGAAGAGGTCCAAACAATTTTTAAGGATCGGGA 428
||.||.| ||||.|..||| ||..|.|| .|||||
RBAM_010720__ 379 ACCCAGACGGATGACGGAGTGGAG------ACGGTGTT------CCGGGA 416
BSNT_01781___ 429 CG---GCAGTGTACGGAC-AATCACAAGCAAGTTTGCCATTGGTGCAGAT 474
|| ||.|..|.||.|| ..|||| |||...|.||||...|||.||||.
RBAM_010720__ 417 CGAAAGCGGGATCCGCACTCTTCAC-AGCTTATATGCCGCGGGTACAGAC 465
BSNT_01781___ 475 GGCGCCGGAAGTACCGTCCGGAAACAGGCGAAAATTGAGTTTCCGGGAAC 524
||.||.||.||.|..|||.|||||||||||...||.|..|||.||||.||
RBAM_010720__ 466 GGAGCGGGGAGCATTGTCAGGAAACAGGCGGGCATCGCTTTTTCGGGCAC 515
BSNT_01781___ 525 AG-----------ACAG-----CACTGTCA--CCGCTGCGCTTG------ 550
.| |||| |.||||.| ||||| |||
RBAM_010720__ 516 TGATGCCGACTTAACAGGAACCCTCTGTGATGCCGCT----TTGAAACAT 561
BSNT_01781___ 551 -----GGGATGTGGCGCTCCTTTCTCCGCCGCCGTCAGGCGTGCTGTCCC 595
.|.||.| ||||||.| .||| .|||||.| ||
RBAM_010720__ 562 CCGCCCGAATCT-----TCCTTTTT--------TTCA-ACGTGCCG--CC 595
BSNT_01781___ 596 TTTGCACAAAAGAGGG--CGGTGTTATGATTGTTCCGTTATC-TCCAGAC 642
| .||||| || |||.|||||||.|| || |.|.|||
RBAM_010720__ 596 T---------GGAGGGATCG--GTTGTGATTGTCCC----TCTTACGGAC 630
BSNT_01781___ 643 CGA---TACCGTGTCGTTGTGATCAGTCCTTAT-CGCA-----CGCAAAC 683
.|| |.||| |||..|.||| || ||.| |||| ||||||.
RBAM_010720__ 631 GGACTTTTCCG---CGTCCTCATC-GT--TTCTCCGCACGCTCCGCAAAA 674
BSNT_01781___ 684 GCCGAAAGATGTGCCTGTGACTGAGGAAGAGCTGAAAGCTGACCTCCTGC 733
||.|||.||.|.|||.||.||.||..|.||||||||||..|||||.|.||
RBAM_010720__ 675 GCGGAAGGAAGAGCCGGTCACCGAAAATGAGCTGAAAGAAGACCTGCGGC 724
BSNT_01781___ 734 GAATTTGCGGAACTGACTTCGGTTTAACCGACCCTTCGTGGATGTCGCGG 783
|.||.|||||.|||||.|||||.||.|..||.||....||||||||||||
RBAM_010720__ 725 GGATATGCGGCACTGATTTCGGATTGAGTGATCCGGTATGGATGTCGCGG 774
BSNT_01781___ 784 TTCGGGAACGCCGCGCGCCAAG-CGAA----ACGGTATCGGGACGGCAGA 828
|||||.||.||||.|||.||.| |||| ||.| |||.||.|||
RBAM_010720__ 775 TTCGGCAATGCCGAGCGTCAGGCCGAACAATACCG-ATCAGGCCGG---- 819
BSNT_01781___ 829 ATCTTTCTTGCGGGTGATGCCGCGCATATTCATTTTCCAGCGGGCGGGCA 878
.|.|||.|.||.||||||||.|||||.|||||||||||.||.|||||.||
RBAM_010720__ 820 GTTTTTGTGGCCGGTGATGCGGCGCACATTCATTTTCCCGCAGGCGGCCA 869
BSNT_01781___ 879 AGGACTGAATGTCGGCCTTCAGGATGCAATGAACCTCGGGTGGAAACTGG 928
|||.|||||....||.|||||||||||..|.||||||||.|||||.||||
RBAM_010720__ 870 AGGGCTGAACACGGGGCTTCAGGATGCCTTCAACCTCGGCTGGAAGCTGG 919
BSNT_01781___ 929 CGGCGGCCATCAAAGG---CTCTGCGCCTTCGTGGCTTTTGGACAGCTAC 975
|||||...||.||.|| ..|.|||||| |..|||.||||||||||.
RBAM_010720__ 920 CGGCGCAAATGAAGGGGAAAGCGGCGCCT---TATCTTCTGGACAGCTAT 966
BSNT_01781___ 976 CATGACGAGCGGCACCCGGCAGC--------TGAAGGGCTCCTC---AGA 1014
|||.|.||..|||| |||| .||||.|.|.|.| |.|
RBAM_010720__ 967 CATCAGGAAAGGCA-----CAGCATAGGAAAAGAAGTGTTGCACAATATA 1011
BSNT_01781___ 1015 AACACGGAGGCACAGACAAAGCTGATCGATTTCAC----TCAAGCA-GGC 1059
||.| |.||||.||||||.||.|||||.|| ||..|.| |||
RBAM_010720__ 1012 AAAA------CCCAGATAAAGCTCATGGATTTTACCGAGTCGGGGATGGC 1055
BSNT_01781___ 1060 CTCCATTT--GCGAAGCATGATGTCGGAGCTGCTGGCCTTCCCTGATGT- 1106
||| |.||| |.||||.|.|...||||||..||.|..|| ||
RBAM_010720__ 1056 -----TTTAAGAGAA--ACGATGACCGCTTTGCTGGATTTTCAGGA-GTC 1097
BSNT_01781___ 1107 GAATCG-ATATGTAGCGGGGCAAATTTCTGCGCTCGATGT-CAGATATGA 1154
.||.|| .||| |.|||||..||.|.||.|||||.|||.| || .|||||
RBAM_010720__ 1098 CAACCGTTTAT-TGGCGGGAAAAGTATCCGCGCTTGATCTGCA-TTATGA 1145
BSNT_01781___ 1155 AGCTGAT-CGTACCATGCCGCCGAATCGTTTGAACGGGGCAAGGCTCCCT 1203
|.|.||| ||.|.| ||||||||.||....|||||||...|.|.||.||.
RBAM_010720__ 1146 ACCGGATGCGGAGC-TGCCGCCGCATATCCTGAACGGAAAACGCCTGCCG 1194
BSNT_01781___ 1204 GACAT-GAAGCTGATTCTT----TCCGACGGCAATTCGGAACGGCTGTAC 1248
||.|| ||| .|||..||| .|.|.|||| |||..||||||||.
RBAM_010720__ 1195 GATATCGAA-TTGACCCTTCATGACGGGCGGC----CGGCCCGGCTGTAT 1239
BSNT_01781___ 1249 AGCTTTCTCCAAAACGGGACATTCGT--TTTGCTGTCATTGAGGCAGGAA 1296
...|||||.||.||.||..|.||.|| ||| |.|||||.|| |||.|
RBAM_010720__ 1240 GATTTTCTTCATAAGGGCGCCTTTGTGCTTT--TATCATTAAG--AGGGA 1285
BSNT_01781___ 1297 GCTGATGATCATATC-GAAGTGAAAGGCTTATGTACGGTAACCGCCT--- 1342
|| || ||||..| |.|.||| ||||| ||.||.|
RBAM_010720__ 1286 GC--AT--TCATGCCGGTATTGA----------TACGG--ACAGCGTGGC 1319
BSNT_01781___ 1343 --------------CGCTTGCAGAA-------CCGAATGAAAAGTTGCGG 1371
.||||||.||| ||||.| ||
RBAM_010720__ 1320 AGCTGTCAGGGCGGAGCTTGCTGAAACACGTGCCGATT----------GG 1359
BSNT_01781___ 1372 GAT---GTGCATACCATATTGATTCGTCCCGATGGACATGTAGCCTGGGC 1418
||| ||.||.|||.|.||.||.||.||.||.||.||.|..||.||||
RBAM_010720__ 1360 GATGACGTCCACACCGTTTTAATCCGGCCGGACGGCCACGCGGCATGGG- 1408
BSNT_01781___ 1419 GGTGGATGCCTCAGC-----GCCCGATTGTACCCAGGTGATTCAAAAAGG 1463
|||| ||.|| |.|| ||| ||..||
RBAM_010720__ 1409 -----------CAGCCGGCGGCTCG---GGAC----GTG-----AAGCGG 1435
BSNT_01781___ 1464 AATCAGCCG--CTGGTTTTCCG------------------TCACCAGCCG 1493
||..|||.| |||| ||| |||.|.|.
RBAM_010720__ 1436 AAGAAGCTGTTCTGG----CCGGTTTGGAGAGATGGGGATTCATCTGA-- 1479
BSNT_01781___ 1494 AGTATAA 1500
RBAM_010720__ 1479 ------- 1479
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