Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01778 and RBAM_010710

See Amino acid alignment / Visit BSNT_01778 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:29
# Commandline: needle
#    -asequence dna-align/BSNT_01778___sipV.1.9828.seq
#    -bsequence dna-align/RBAM_010710___sipV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01778___sipV-RBAM_010710___sipV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01778___sipV-RBAM_010710___sipV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01778___sipV
# 2: RBAM_010710___sipV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 522
# Identity:     384/522 (73.6%)
# Similarity:   384/522 (73.6%)
# Gaps:          21/522 ( 4.0%)
# Score: 1356.0
# 
#
#=======================================

BSNT_01778___      1 ATGAAAAAACGGTTTTGGTTTCTTGCCGGTGTAGTGTCCGTTGTTCTCGC     50
                     .||||||||||.|||||||||.|.|||||.||..|...|||||||.|.||
RBAM_010710__      1 TTGAAAAAACGATTTTGGTTTATAGCCGGCGTGCTTATCGTTGTTTTGGC     50

BSNT_01778___     51 CATTCAGGTTAAA-AATGCTGTCTTTATTGATTACAAGGTAGAAGGCGTC     99
                     |||.|| .||||| |||||..|.|||||||||||.||.||.|||||..||
RBAM_010710__     51 CATACA-ATTAAAGAATGCCATTTTTATTGATTATAAAGTCGAAGGAATC     99

BSNT_01778___    100 AGTATGAACCCGACCTTCCAGGAAGGAAACGAATTGTTGGTCAATAAATT    149
                     ||.|||||.||||||||..|..|||||||.||..||.|||||||.||.||
RBAM_010710__    100 AGCATGAATCCGACCTTTAAACAAGGAAATGAGCTGATGGTCAACAAGTT    149

BSNT_01778___    150 TTCGCATCGATTTAAAACCATCCATCGTTTTGACATCGTCCTTTTTAAAG    199
                     |||.|||||.|..|||||.||||..|||||.||.||.|||||.|||||||
RBAM_010710__    150 TTCCCATCGTTACAAAACGATCCGCCGTTTCGATATTGTCCTGTTTAAAG    199

BSNT_01778___    200 GCCCTGATCATAAAGTGCTGATTAAACGGGTAATCGGCTTGCCCGGTGAA    249
                     ||||..|.|..|||||||||||.|||||.||.|||||..|.|||||.||.
RBAM_010710__    200 GCCCGCACCGCAAAGTGCTGATCAAACGTGTCATCGGGCTCCCCGGCGAG    249

BSNT_01778___    250 ACGATCAAATATAAAGATGATCAGCTGTATGTGAACGGAAAGCAGGTTGC    299
                     .|.|||..|||.|..||.|||||||||||||||||.|||||.|.|||.||
RBAM_010710__    250 TCAATCGCATACAGGGAGGATCAGCTGTATGTGAATGGAAAACGGGTGGC    299

BSNT_01778___    300 TGAGCCATTTTTGAAGCATTTGAA---ATCTGTTTCTGCCGGCAGCCATG    346
                     .||.||.|||||.||.|..||.||   |||..|.||.|||||.|||||||
RBAM_010710__    300 GGAACCGTTTTTAAAACCGTTAAAGTCATCATTGTCCGCCGGGAGCCATG    349

BSNT_01778___    347 TAACGGGTGATTTTTCTTTGAAAGATGTGACGGG----AACAAGCAAGGT    392
                     |.||.|||||||.|.|..||||.||...|||.||    || |||||   |
RBAM_010710__    350 TGACCGGTGATTATACGCTGAAGGAAACGACCGGGCGCAA-AAGCA---T    395

BSNT_01778___    393 GCCGAAAGGAAAATATTTTGTCGTTGGAGATAATCGCATATACAGCTTCG    442
                     .|||||.|||.||||.|||||..||||.||.||.||||||||||||.|||
RBAM_010710__    396 ACCGAAGGGACAATACTTTGTTATTGGCGACAACCGCATATACAGCCTCG    445

BSNT_01778___    443 ACAGCCGGCATTTTGGTCCGA-TAAGAGAAAAAAATATTGTCGGTGTGAT    491
                     |||||||.|||||.||||||| |||| ||.|||.|.||||||||.||.||
RBAM_010710__    446 ACAGCCGTCATTTCGGTCCGATTAAG-GATAAAGACATTGTCGGAGTTAT    494

BSNT_01778___    492 ------TTCTGATGCCGAATAA    507
                           .||.||.|||.|.|.|
RBAM_010710__    495 CAGTGAATCAGACGCCAAGTGA    516


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