Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01773 and RBAM_010670
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_01773___yhjB.1.9828.seq
# -bsequence dna-align/RBAM_010670___yhjB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01773___yhjB-RBAM_010670___yhjB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01773___yhjB-RBAM_010670___yhjB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01773___yhjB
# 2: RBAM_010670___yhjB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1514
# Identity: 1103/1514 (72.9%)
# Similarity: 1103/1514 (72.9%)
# Gaps: 88/1514 ( 5.8%)
# Score: 3960.5
#
#
#=======================================
BSNT_01773___ 1 ATGAATGCAGCTCTCATCATCATTTTCGGT-------GTCCTGCTC---- 39
|||||.|||| |||||.|.|| |.|.|||||
RBAM_010670__ 1 ATGAACGCAG----------CATTTCCCGTAATGGCCGCCGTGCTCCTGT 40
BSNT_01773___ 40 -TTGAGTATTTTTCTCGGTATACGCGCCCAAAAAGGAAAAGACATGAACC 88
|||.||| |.||||||.||.||.||||.||||||||||.|.|||.|||
RBAM_010670__ 41 TTTGTGTA--TATCTCGGAATCCGGGCCCGAAAAGGAAAACATATGGACC 88
BSNT_01773___ 89 TGGAGCAGTGGACGGTTGGAGGGCGCGGCTTCGGAACTGTGTTCGTCTTC 138
|.||.||.||||||||.||.||.|||||||||||.||..||||.|||||.
RBAM_010670__ 89 TTGAACAATGGACGGTGGGCGGACGCGGCTTCGGCACGATGTTTGTCTTT 138
BSNT_01773___ 139 CTTTTGATGGCAGGCGAAATTTATACTACTTTTACGTTTCTCGGCGGCAG 188
.|.||.|||||.||.|||||.||.||.||.|||||.||.||||||||.||
RBAM_010670__ 139 TTATTAATGGCGGGAGAAATATACACGACCTTTACATTCCTCGGCGGAAG 188
BSNT_01773___ 189 CGGCTGGGCCTACGGAAAGGGCGGTCCAGCCTTTTATATCATCGCCTACG 238
|||.|||||.||||||||.||.||.||.|||||||||||.|||||.||||
RBAM_010670__ 189 CGGATGGGCTTACGGAAAAGGAGGCCCCGCCTTTTATATTATCGCGTACG 238
BSNT_01773___ 239 GATGTCTGGCCTACATCCTTTCTTACTGGCTTCTTCCAGCAGTTTGGACG 288
|.||.||.||||||||..|.||.||.||||||||.|||||.||.|||||.
RBAM_010670__ 239 GCTGCCTTGCCTACATTTTGTCATATTGGCTTCTGCCAGCCGTGTGGACT 288
BSNT_01773___ 289 TACGCGAAACAGCATAAACTAATGTCGCAGTCTGATTTTTTCACAAAAAA 338
|||||.|||||.||.|||||.||||||||.||.||||||||.|....|||
RBAM_010670__ 289 TACGCCAAACAACACAAACTGATGTCGCAATCAGATTTTTTTATTTCAAA 338
BSNT_01773___ 339 ATACAACAGTCCGCTGCTTGGCATTCTCGTTTCACTGGTCGGCATCGCCG 388
|||||||||..||||.||.|||||||||||.||.||.|||||||||||..
RBAM_010670__ 339 ATACAACAGCTCGCTCCTCGGCATTCTCGTATCGCTCGTCGGCATCGCAT 388
BSNT_01773___ 389 CACTCATTCCCTATCTTGTACTGCAGCTGAAAGGCCTCGGGCTGATTGTA 438
|.|||||.||||||||.||.||||||||||||||.|||||..|.|||||.
RBAM_010670__ 389 CCCTCATACCCTATCTCGTCCTGCAGCTGAAAGGGCTCGGATTAATTGTT 438
BSNT_01773___ 439 TCGGAAACCTCGTACGG-CAAAATCACCCCGACCGCCGCCATCTGGATCG 487
||.|.|||.||.||||| ||.|.|| |.||..|.|||||..|||||||||
RBAM_010670__ 439 TCAGCAACGTCATACGGACAGATTC-CGCCCTCAGCCGCTGTCTGGATCG 487
BSNT_01773___ 488 GCGCTATTTCCATCACGGTTTATGTTATGGTTTCCGGCATTCACGGGTCT 537
|||||.|||||||||||.|||||||.|||.|.||.||.||.|||||.||.
RBAM_010670__ 488 GCGCTGTTTCCATCACGATTTATGTGATGATATCAGGAATCCACGGTTCA 537
BSNT_01773___ 538 GCCTGGATATCGGTTGTGAAAGACATCATGATTCTGGTTGTCGTTCTGTT 587
||.||||||||.||.||.|||||.|||||||||.|.|...||||.||||.
RBAM_010670__ 538 GCGTGGATATCAGTCGTTAAAGATATCATGATTTTAGGCATCGTCCTGTA 587
BSNT_01773___ 588 TTTAGGTGTGTATTTGCCAATTCATTACTACGGCGGATTTCAAGACATGT 637
||||||..|.|||.||||.|||||||||||.|||||||||...||.||||
RBAM_010670__ 588 TTTAGGCATTTATCTGCCCATTCATTACTATGGCGGATTTACGGAGATGT 637
BSNT_01773___ 638 TTCAGCAGATTGAAACGGCAAAGCCTGGCTTTCTTACGCTCCCCGAATCG 687
|..|.||.|||||..|.|||||.||.||.|||||.|||||.||.|||.|.
RBAM_010670__ 638 TCAAACAAATTGACGCCGCAAAACCCGGTTTTCTCACGCTGCCGGAAACC 687
BSNT_01773___ 688 GGACAAAGTGCGGCATGGTTCAGTTCAACCGTACTCTTGACAGCGCTTGG 737
|||||.||.|...|.||||||||.|||||.||..|..||||.||.||.||
RBAM_010670__ 688 GGACAGAGCGTTTCCTGGTTCAGCTCAACGGTTTTGCTGACCGCCCTCGG 737
BSNT_01773___ 738 TTTTTACATGTGGCCTCACACGTTTTCCGCTTCGTATTCAGCCGAAAACC 787
.|||||.||||||||.||.||.|||.|||||||.|||||.||.||..|.|
RBAM_010670__ 738 CTTTTATATGTGGCCCCATACATTTGCCGCTTCCTATTCGGCGGAGCATC 787
BSNT_01773___ 788 CAAAAGTCTTTCGTAAAAACGCCATCATCATGCCTTTGTACCAGCTGGTC 837
|....||.|||||.||||||||.||||||||||||.|.||.|||||.|||
RBAM_010670__ 788 CGCGGGTGTTTCGGAAAAACGCAATCATCATGCCTCTTTATCAGCTCGTC 837
BSNT_01773___ 838 CTGCTCTTCGTC--CTTTTCGTCGGCTTTGCGGCTATCCTGCAAGTTCCA 885
|||||.||.||| ||||.| |||.||||||||.||.|||||.||.||.
RBAM_010670__ 838 CTGCTGTTTGTCATCTTTAC--CGGATTTGCGGCGATTCTGCAGGTGCCC 885
BSNT_01773___ 886 GATCTGAAAGGCGCAGACGGGGATTTGTCGC--TTTTGAAACTGTCTCTG 933
|.|.|.|||||.||.|||..||| |.|||| |.||.||.||||||.||
RBAM_010670__ 886 GGTTTAAAAGGGGCGGACACGGA--TCTCGCCTTATTAAAGCTGTCTGTG 933
BSNT_01773___ 934 CAAGCATTTGACCCTTGGTTTGTCGGAATTATCGGTGCTGCCGGACTGCT 983
.||.|.|||||.||.||||||||||||.|.|||||..|.||.||..|.||
RBAM_010670__ 934 AAAACCTTTGATCCCTGGTTTGTCGGACTGATCGGATCGGCGGGCATCCT 983
BSNT_01773___ 984 GACAGCACTTGTGCCAGGGTCTATGATCTTAATGTCCGCCTC---CACAC 1030
|||.||.|||||.||.||.||.|||||.|||||| ||||| |||.|
RBAM_010670__ 984 GACGGCGCTTGTACCCGGTTCAATGATATTAATG---GCCTCAAGCACGC 1030
BSNT_01773___ 1031 TGTTTGCAAAAAATGTGTACAAGGTAATCGCGCCCCGCACGACAGAACAG 1080
||||.||.||||||||||||||.|..||...||||.|||||||.||..|.
RBAM_010670__ 1031 TGTTCGCCAAAAATGTGTACAAAGCCATTCTGCCCGGCACGACTGACGAA 1080
BSNT_01773___ 1081 CAAGTAT--CGGCTCTTGCTAAGTTTTTA----GTGCCGGTGATTGCGCT 1124
.||||.| |||||| ||.|| .|| ||.||.||.||.|||||
RBAM_010670__ 1081 AAAGTCTCACGGCTC--GCAAA----ATACGCCGTACCCGTCATCGCGCT 1124
BSNT_01773___ 1125 GATTTCGGTTTATTTTACCTTCAAAGGCGGGAATACCATCGTTACGCTGC 1174
|||.||.||.||||||||..|.||||||||.|||||||||||.||..|||
RBAM_010670__ 1125 GATATCCGTATATTTTACGCTGAAAGGCGGAAATACCATCGTCACCTTGC 1174
BSNT_01773___ 1175 TTTTGATGGGCTACAGCCTTGTCACACAGCTATTCCCCGCCCTTTTGTTC 1224
||||.||||||||||||||||||||.|||||.|||||||||||.||.|||
RBAM_010670__ 1175 TTTTAATGGGCTACAGCCTTGTCACCCAGCTTTTCCCCGCCCTCTTATTC 1224
BSNT_01773___ 1225 AGCCTGCTCAAGCATAATATGG-------TGACAAAACAGGGGGCCTTCG 1267
|||||||..|||| || |.||||..||.||.||.||.|
RBAM_010670__ 1225 AGCCTGCCGAAGC-------GGCGTTTCATCACAAGCCACGGCGCTTTTG 1267
BSNT_01773___ 1268 CTGGCATTATTGCAGGTGTTGGAGCAGTTACTTATATTACAATGACTGAA 1317
|.|||||.|..||.||.||.|||.|.||..|||..|||||..||||.|||
RBAM_010670__ 1268 CCGGCATAACGGCCGGGGTCGGAACGGTGGCTTTCATTACGCTGACCGAA 1317
BSNT_01773___ 1318 ACGACGATCGGCACTTTATTTCCGGCTCTGCCGCAAGCCGCAAAAGACTT 1367
.|.||.|||||.||..|.||||||..|||.|||||...||..||.||..|
RBAM_010670__ 1318 TCAACCATCGGAACCCTCTTTCCGTTTCTTCCGCAGATCGTTAAGGATAT 1367
BSNT_01773___ 1368 GAATGTAGGCATCGTCGCCCTGCTTTTGAATATCACGGTCATGATGGCAG 1417
||||..|||||||.||||.|||.||.||||.||..|.||||||.|.||||
RBAM_010670__ 1368 GAATACAGGCATCATCGCACTGGTTCTGAACATTGCCGTCATGTTTGCAG 1417
BSNT_01773___ 1418 TCAGCCTTATGACAAGGAAGGC-GAAA----------AGCGCTGCGGCCG 1456
||||| |.| |.||.| |||| ||| ||.||||
RBAM_010670__ 1418 TCAGC-----GCC---GCAGTCAGAAAAAAACAAATCAGC---GCAGCCG 1456
BSNT_01773___ 1457 ATCAGGCGGCTTAA 1470
|..|||||||||||
RBAM_010670__ 1457 AAAAGGCGGCTTAA 1470
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