Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01763 and RBAM_010570
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:28
# Commandline: needle
# -asequence dna-align/BSNT_01763.1.9828.seq
# -bsequence dna-align/RBAM_010570___yhfW.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01763-RBAM_010570___yhfW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01763-RBAM_010570___yhfW.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01763
# 2: RBAM_010570___yhfW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1547
# Identity: 490/1547 (31.7%)
# Similarity: 490/1547 (31.7%)
# Gaps: 913/1547 (59.0%)
# Score: 1631.5
#
#
#=======================================
BSNT_01763 0 -------------------------------------------------- 0
RBAM_010570__ 1 TTGACTACTTTTTCAAACGAAGAACCGGCTTCCTATTGGAAAGCAACAGC 50
BSNT_01763 0 -------------------------------------------------- 0
RBAM_010570__ 51 TGACATTCCTTCCTTTCCCGCCCTCACTGAAGATACGGAATGTGACGTTG 100
BSNT_01763 0 -------------------------------------------------- 0
RBAM_010570__ 101 CGGTTATCGGCGGAGGAATTACGGGCCTGACAACGGCATACGAACTGACG 150
BSNT_01763 0 -------------------------------------------------- 0
RBAM_010570__ 151 AAAAGAGGTTTCCGTGTCGCTGTCATTGAAGCAGACCGGATTTTAAACGG 200
BSNT_01763 0 -------------------------------------------------- 0
RBAM_010570__ 201 GACGACCGCGGGCACGACCGCAAAAATCACCGCCCAGCATGATTTCATCT 250
BSNT_01763 0 -------------------------------------------------- 0
RBAM_010570__ 251 ATGCCGATCTTATTCAGCAGATCGGCCTGACCAGCGCAAGGCTGTATTTC 300
BSNT_01763 1 ------------------GTGG-----ATGAA------CATCAA------ 15
.||| ||||| ||||||
RBAM_010570__ 301 GAAGCCCATCTCCGCGCCATGGAAGACATGAAGCAGATCATCAAGGACCT 350
BSNT_01763 16 ----ATTGAATGC-GAATGGATCGAGCAAGACGCATATCTTTATACGGCA 60
|||||.||| ||.| |||.||.|||||||||||||||||.| |.
RBAM_010570__ 351 TTCGATTGACTGCAGACT-GATTGAACAAGACGCATATCTTTACA---CC 396
BSNT_01763 61 AAT---GAA-AACGCTGTTCAAAAAATCCGCACCGAGCATGAGGCATACA 106
||| ||| .|.|| ||..||||||||||||..|||||.||.||.||.|
RBAM_010570__ 397 AATACAGAATCAGGC-GTCAAAAAAATCCGCAGTGAGCAGGAAGCTTATA 445
BSNT_01763 107 CAAAGCTCGGAATTGAAAGAGACCTTGTCAAGGATCTTCCAATTCCCTTA 156
|.||||||||.||||||...||.|||||.||.||.|||||..|.|||.|.
RBAM_010570__ 446 CCAAGCTCGGTATTGAACACGAGCTTGTGAAAGAACTTCCCGTACCCGTT 495
BSNT_01763 157 GGTTCTAAGCTGGCGCTTGTCATGAAGAATCAAGCTCAATTTCATCCGCT 206
|.||..|.|||.|..||.|.||||||||||||.||.|||||.||||||||
RBAM_010570__ 496 GATTGCAGGCTCGGTCTCGCCATGAAGAATCAGGCGCAATTCCATCCGCT 545
BSNT_01763 207 GCAATACTTAAAA--GCGCTTCTGGAGC---------AAATTGTTCAAAA 245
||.|.| |||| ||.|| |.||.||| ||||
RBAM_010570__ 546 -------TTTATATGGCGC----GGCGCTCGTCAATGAGATCGTT-AAAA 583
BSNT_01763 246 AGGCGGC-CGAATTTATGAGGAGACCGTTGCGCTTGATATCAAAAAAG-- 292
|.|.||| ||.||||.|||..||||.|.||||.|.||.||.|||||||
RBAM_010570__ 584 ACGGGGCGCGGATTTTTGAACAGACGGCTGCGATCGACATAAAAAAAGAA 633
BSNT_01763 293 GCGAAAGGCCCGAAGTGGTAACTAAAAGCCGGCACGCCATTAAGAGCCGC 342
.||.| |||.||||||||.||.||||.|.|.||||.|||.|||.||.||
RBAM_010570__ 634 CCGCA--GCCGGAAGTGGTCACGAAAAACAGACACGGCATCAAGTGCAGC 681
BSNT_01763 343 TTTATCATATGCTGTTCCCACTTCCCTTTTTATGACGGAGGCGGATTATA 392
|.|||..|.||||.|||||||||.||||||||||||||||||||..|.||
RBAM_010570__ 682 TATATTGTCTGCTCTTCCCACTTTCCTTTTTATGACGGAGGCGGGCTTTA 731
BSNT_01763 393 TGCTGCGAGAATGTACTCCGACAGATCTTATGTCCTTGCCATCAAGCCGA 442
|||.||.||||||||..||..||||||.||.||.||.||..|.|||||||
RBAM_010570__ 732 TGCCGCCAGAATGTATGCCAGCAGATCCTACGTACTCGCGGTAAAGCCGA 781
BSNT_01763 443 AGATCGAGTATCCCGAGGGCATGTATTTGAGTATCGATCAGCCGT-CAG- 490
|....|.||||||.||.||.||||||.|.||.||.||..|||||| |||
RBAM_010570__ 782 AACAAGCGTATCCGGACGGGATGTATCTCAGCATAGACAAGCCGTCCAGA 831
BSNT_01763 491 TGGCGCTCCGCTATACGGTTGTAAACGGTGAAAAGCTGATTCTCTTCAGC 540
| |.||.||.||.||.|.|.|.|||||||||||.|||.||||..||.||
RBAM_010570__ 832 T--CACTGCGATACACCGATTTGAACGGTGAAAAACTGGTTCTTGTCGGC 879
BSNT_01763 541 GGAGTAAGCCATAAAACAGGGCAGGGAAAAGACATGTCTACACATTATGA 590
||.|.||||||.||||||||.|||||||||||.|||||....|||||.||
RBAM_010570__ 880 GGCGAAAGCCACAAAACAGGCCAGGGAAAAGAAATGTCCGAGCATTACGA 929
BSNT_01763 591 AACACTGAGACAACTAGCCGAAAGCACCATCGGCATCGAAAGCATTCCAT 640
|.||||||.||||.|.||.|||..|||.|||||..|.||||||||.||||
RBAM_010570__ 930 AGCACTGAAACAATTTGCGGAAGACACAATCGGAGTTGAAAGCATCCCAT 979
BSNT_01763 641 ATTATTGGTC--CACCTAA------------------------------- 657
||.||||||| ||| ||
RBAM_010570__ 980 ATCATTGGTCTGCAC--AAGACCTTGTCACCATTGACAAAATTCCGTTCA 1027
BSNT_01763 657 -------------------------------------------------- 657
RBAM_010570__ 1028 TCGGTCCCATCTCGGGCGATGAAGAACATATTTTGGCGGCGACCGGTTTT 1077
BSNT_01763 657 -------------------------------------------------- 657
RBAM_010570__ 1078 AAAAAATGGGGCATGACAAGCTCAGCGCTCGCCGCGAAGCTTTTGGCTGA 1127
BSNT_01763 657 -------------------------------------------------- 657
RBAM_010570__ 1128 TCATATTCAAAACAAAAAGAACCCGTTTTCCGGCCTGTTTATTCCGTCAC 1177
BSNT_01763 657 -------------------------------------------------- 657
RBAM_010570__ 1178 GCTTCCACGCAGATCCGGGACTGAAAAAACTGATTTCCTATAATGCCGAC 1227
BSNT_01763 657 -------------------------------------------------- 657
RBAM_010570__ 1228 GTGGCCAAACACCTTATCTCGGGCAAACTTGAGAGGCCAGACGCTTCACC 1277
BSNT_01763 657 -------------------------------------------------- 657
RBAM_010570__ 1278 TGAGACTCTTCGGCCCGGGGAGGGAAAAATCGTAACGGTAAACGGCAAAC 1327
BSNT_01763 657 -------------------------------------------------- 657
RBAM_010570__ 1328 GGGCCGGCGCCTATAAAGATGAAAAAGGCTGTCTGCATCTTGTCGATACG 1377
BSNT_01763 657 -------------------------------------------------- 657
RBAM_010570__ 1378 ACATGCACCCATTTGGGCTGTGAGGTCGAATGGAATGACGGCGAACGGAC 1427
BSNT_01763 657 -------------------------------------------------- 657
RBAM_010570__ 1428 GTGGGACTGTCCTTGTCACGGGTCCCGGTTCACACCCGACGGCGGGGTTG 1477
BSNT_01763 657 ----------------------------------------------- 657
RBAM_010570__ 1478 CCGAAGGTCCCGCCATCAAGCCGCTGAAGCGCCTCAGCCAAGATTGA 1524
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