Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_01756 and RBAM_010520

See Amino acid alignment / Visit BSNT_01756 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:27
# Commandline: needle
#    -asequence dna-align/BSNT_01756___yhfR.1.9828.seq
#    -bsequence dna-align/RBAM_010520___yhfR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01756___yhfR-RBAM_010520___yhfR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01756___yhfR-RBAM_010520___yhfR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01756___yhfR
# 2: RBAM_010520___yhfR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 600
# Identity:     416/600 (69.3%)
# Similarity:   416/600 (69.3%)
# Gaps:          42/600 ( 7.0%)
# Score: 1358.0
# 
#
#=======================================

BSNT_01756___      1 ATGACAGCCGTTTGTTTAGTAAGACATGGAGAAACCGATTGGAACCTGCA     50
                     |||||.||||||||||||||||||||||||||.||.||||||||  ||| 
RBAM_010520__      1 ATGACTGCCGTTTGTTTAGTAAGACATGGAGAGACTGATTGGAA--TGC-     47

BSNT_01756___     51 GCAAAA-ATGC--CAAGGCAAAACCGATATCCCGCTAAACGCAACAGGTG     97
                     .||||| |.||  |||||||||.|.|||||.|||.||||.||.||.||.|
RBAM_010520__     48 CCAAAAGAAGCTTCAAGGCAAATCGGATATTCCGTTAAATGCGACGGGAG     97

BSNT_01756___     98 AACGCCAAGCAAGAGAAACCGGAGAATATGTAAAGG-------ACTTTTC    140
                     |.||.||.||.|.||||||.|||||.||..||||||       |      
RBAM_010520__     98 AGCGTCAGGCGAAAGAAACAGGAGAGTACTTAAAGGGGTCCGAA------    141

BSNT_01756___    141 TTGGGATATTATTGTGACGAGCCCGCTGAAAAGAGCGAAAAGAACCGCGG    190
                      ||||||.|.||.||..|.||||||.|||||.|.||.|.||.|||.||.|
RBAM_010520__    142 -TGGGATGTCATCGTCTCAAGCCCGATGAAACGGGCCAGAAAAACAGCTG    190

BSNT_01756___    191 AAATTATTAATGAATATCTGCATCTTCCGATAGTCGAGATGGATGATTTT    240
                     |.||||||||.|..|.|.||.|||||||.||.||||..|||||.|||||.
RBAM_010520__    191 ACATTATTAACGGGTTTTTGAATCTTCCCATCGTCGTCATGGAAGATTTC    240

BSNT_01756___    241 AAGGAACGCGATTACGGCGACGCGGAGGGCATGCCGCTGGAGGAACGGAC    290
                     |..|||||....|||||.||.|||||.||.|||.|..|...|||||||.|
RBAM_010520__    241 AGAGAACGAAGCTACGGTGATGCGGAAGGAATGTCTTTACCGGAACGGTC    290

BSNT_01756___    291 AAAGCGCTATCCAGATAACATCTATCCGAATATGGAAACCTTAGAAGAAC    340
                     .||||||||.||.|||||.|.|||.|||||.|||||.|||..||||||.|
RBAM_010520__    291 GAAGCGCTACCCGGATAAAAACTACCCGAACATGGAGACCGCAGAAGAGC    340

BSNT_01756___    341 TCACTGACAGGCTGATGGGCGGTTTGGCAAAAGTGAACCAGGCG---TAT    387
                     |.||.|||||..||.|.|.||||||.|..|||||   .||||.|   |.|
RBAM_010520__    341 TGACAGACAGAATGCTTGCCGGTTTAGTGAAAGT---TCAGGAGCAATTT    387

BSNT_01756___    388 CC-AAACAAGAAGGTGCTGATCGTGGCGCACGGTGCGGCAATTCACGCCC    436
                     || .|.||| ||.||.||||||||.|..|||||.||.||.|||||.||||
RBAM_010520__    388 CCTGATCAA-AAAGTACTGATCGTCGGTCACGGCGCAGCCATTCATGCCC    436

BSNT_01756___    437 TGCTGACAGAAATATCCGGCGGTGACCCGGAGCTTCAAAGCACCCGTCTC    486
                     |..||.|.|..||.||.|.||||||..|.||..|.||||.|.|....||.
RBAM_010520__    437 TCTTGTCCGCCATTTCTGACGGTGATACAGACATACAAAACGCAAAGCTT    486

BSNT_01756___    487 GTCAACGCCTGCCTCAGCAACAT----TGAATTTGCAGAAGAAAAATGGC    532
                     |||||.||.|||||.|||||.||    .|||||    |||.|.||.||||
RBAM_010520__    487 GTCAATGCGTGCCTGAGCAATATCGAACGAATT----GAAAATAAGTGGC    532

BSNT_01756___    533 GGATAAAAGACTATAATATCAACAGCCACTTATCCGGCTTTATCAAATAA    582
                     |..|.|||||.||.|||.|.|.|||||||.||||.|    .|||  ||||
RBAM_010520__    533 GCGTCAAAGATTACAATGTAAGCAGCCACCTATCAG----AATC--ATAA    576


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.