Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01745 and RBAM_010490

See Amino acid alignment / Visit BSNT_01745 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:27
# Commandline: needle
#    -asequence dna-align/BSNT_01745___yhfN.1.9828.seq
#    -bsequence dna-align/RBAM_010490___yhfN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01745___yhfN-RBAM_010490___yhfN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01745___yhfN-RBAM_010490___yhfN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01745___yhfN
# 2: RBAM_010490___yhfN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1313
# Identity:     954/1313 (72.7%)
# Similarity:   954/1313 (72.7%)
# Gaps:          94/1313 ( 7.2%)
# Score: 3416.0
# 
#
#=======================================

BSNT_01745___      1 ATGCGCAAGTGGATTGCGGCAGCAGGACTTGCTTACGTGCTGTACGGGCT     50
                     ||||||||.|||||.||||||||.||||||||.||.|||||||||||.||
RBAM_010490__      1 ATGCGCAAATGGATAGCGGCAGCCGGACTTGCCTATGTGCTGTACGGCCT     50

BSNT_01745___     51 GTTTTTTTATTGGTATTTTTTCCTGTCGGGTGATTCCGCAATACCGGAAG    100
                     .|||||.|||||||||||.||..||.|.||.||.|||||..|.|||||.|
RBAM_010490__     51 TTTTTTCTATTGGTATTTCTTTATGACAGGCGACTCCGCCGTCCCGGAGG    100

BSNT_01745___    101 CCGTGAAAGGG-ACGCAGGCTGATCCGGCTTCTTTCATGAA-----GCCG    144
                     |||| |||||| |||.|.||.||||||.|.||.||.|||.|     ||||
RBAM_010490__    101 CCGT-AAAGGGAACGAAAGCCGATCCGTCCTCGTTTATGGACCCGGGCCG    149

BSNT_01745___    145 TCTGAGTTGGCAGTGGCCGAGCAGTATTCGAATGTCAAGAATTTTTTATT    194
                     .|     |||.||..||.||..|.|.|||.|||||.|||.||||||||||
RBAM_010490__    150 CC-----TGGAAGCCGCTGAAAACTTTTCAAATGTAAAGGATTTTTTATT    194

BSNT_01745___    195 TTTTATCGGGGTACCACTTGATTGGTTTCTGTTTTTTGTTCTGCTTGTCA    244
                     |||.|||||.|..||..|.|||||||||.|.||||||.|.|||||..|.|
RBAM_010490__    195 TTTCATCGGTGCGCCGTTAGATTGGTTTTTATTTTTTCTGCTGCTCATTA    244

BSNT_01745___    245 GCGGTGTTT--CAAAGAAAATCAAGAAATGGATCGAAGCGGCCGTGCCTT    292
                      |||.|.||  |||| |||||.|||.|.|||.|.|||||.||.||||..|
RBAM_010490__    245 -CGGGGCTTGCCAAA-AAAATAAAGCATTGGCTGGAAGCAGCGGTGCGCT    292

BSNT_01745___    293 TTCGGTTTTTGCAGACCGTTGGTTTTGTGTTTGTGCTTTCGCTGA---TT    339
                     |||||.|..||||.|.||...|.||.||.||||||.||||.||.|   ||
RBAM_010490__    293 TTCGGGTGCTGCAAATCGGAAGCTTCGTATTTGTGATTTCACTCATCGTT    342

BSNT_01745___    340 ACAACATTGGTGACGCTGCCTTTAGATTGGATAGGCTATCAAGTATCGCT    389
                     ||..|   ||...||||.||..|.||.|||||.||.||||..||.|||||
RBAM_010490__    343 ACGGC---GGCTTCGCTTCCGCTTGAGTGGATCGGATATCGGGTTTCGCT    389

BSNT_01745___    390 TGACTATAACATTTCCACACAGACAACGGCCAGCTGGGCTAAG-GATCAG    438
                     ||..|||.|.|||||.||.||||||||.||.|||| ||.|||| ||.||.
RBAM_010490__    390 TGCGTATCATATTTCGACGCAGACAACAGCAAGCT-GGATAAGAGACCAT    438

BSNT_01745___    439 GTTATCAGCTTT-TGGATCAGCTTTCCAATCTTTACGCTTTGCGTTCTCG    487
                     ||.|| .|.||| ||||||||.|||||..|.|||.|..|.||.||.||.|
RBAM_010490__    439 GTCAT-TGATTTCTGGATCAGTTTTCCGCTGTTTGCCGTGTGTGTGCTTG    487

BSNT_01745___    488 TTTTTTATTGGCTGATCAAAAGGCATGAAAAAAAATGGTGGTTATACGCC    537
                     |.|||||.||||||||||.||.||||..|||||||||||||||.|||||.
RBAM_010490__    488 TGTTTTACTGGCTGATCACAAAGCATACAAAAAAATGGTGGTTTTACGCT    537

BSNT_01745___    538 TGGCTGT-TAACAGTGCCGTTTTCGCTGTTTCTGTTTTTTATTCAGCCGG    586
                     ||| ||| |.||.|||||||||.|.||||||.|||||||..|.|||||||
RBAM_010490__    538 TGG-TGTCTTACTGTGCCGTTTACCCTGTTTTTGTTTTTCCTGCAGCCGG    586

BSNT_01745___    587 TCATTATCGATCCTTTATACAATGATTTTTATCCGCTGAAAAACAAAGAG    636
                     ||.|.||.|||||||||||||||||||||||||||||||||.||||.|||
RBAM_010490__    587 TCGTGATTGATCCTTTATACAATGATTTTTATCCGCTGAAAGACAAGGAG    636

BSNT_01745___    637 CTTGAAAGCAAAATTTTAGAGCTGGCAGATGAAGCCAATATTCCGGCTGA    686
                     ||.|||||||||||.||...|||.||.||..|||||.|.||||||||...
RBAM_010490__    637 CTGGAAAGCAAAATCTTGTCGCTTGCCGACAAAGCCGACATTCCGGCCAG    686

BSNT_01745___    687 CCATGTATATGAAGTGAACATGTCAGAAAAAACAAATGCGCTGAATGCCT    736
                     ||||||.||||||||.||.|||||.||.|||||.||||||||||||||.|
RBAM_010490__    687 CCATGTTTATGAAGTAAATATGTCGGAGAAAACGAATGCGCTGAATGCGT    736

BSNT_01745___    737 ATGTTACAGGAATTGGGGCCAATAAACGGATTGTATTGTGGGATACGACG    786
                     ||||.||.|||||.||..|.|||||.|||||.||.|||||||||||||||
RBAM_010490__    737 ATGTGACGGGAATCGGTTCGAATAAGCGGATCGTTTTGTGGGATACGACG    786

BSNT_01745___    787 CTGAACAAACTTGACGATTCAGAAATCCTGTTTATTATGGGCCACGAAAT    836
                     ||.||||||||..|.|||...|||||..||||.||||||||.||.||.||
RBAM_010490__    787 CTTAACAAACTGAAGGATCGGGAAATTTTGTTCATTATGGGGCATGAGAT    836

BSNT_01745___    837 GGGCCATTATGTCATGAAGCACGTTTACATCGGTCTGGCTGGTTATTTGC    886
                     |||.||.|||||.|||||||||||.||||||||.|||||.||.|||.|.|
RBAM_010490__    837 GGGGCACTATGTGATGAAGCACGTGTACATCGGACTGGCCGGGTATCTCC    886

BSNT_01745___    887 TCGTGTCGCTCGCCGGATTTTATGTCATTGATAAGCTTTACAAGCGGACG    936
                     |..||||..|.|||||.||.|||.|||||||.||||||||.|||||| |.
RBAM_010490__    887 TGCTGTCATTAGCCGGGTTCTATATCATTGACAAGCTTTATAAGCGG-CT    935

BSNT_01745___    937 GTTCGCCTAA----CCCGCAGCATGTTTCATTTAGAAGGACGGC---ATG    979
                     ||   ||.||    .|.||.|.|||.|||||.|| ||||  |||   |.|
RBAM_010490__    936 GT---CCAAATTCTTCGGCCGAATGCTTCATATA-AAGG--GGCCTGAAG    979

BSNT_01745___    980 ATCTTGCGGCACTTCCGCTGTTATTGCT-------TTTGTTTTCTGTTTT   1022
                     ||||.||.||.||.||||||||||||||       |..|||.||.|||||
RBAM_010490__    980 ATCTGGCCGCCCTCCCGCTGTTATTGCTGCTCATATCCGTTCTCAGTTTT   1029

BSNT_01745___   1023 GAGCTT----TGCGGTGACGCCTTTTTCTAATGCTGTCTCGCGTTATCAG   1068
                       ||||    |.||.|.|||         |||||.|||||.||.||||||
RBAM_010490__   1030 --GCTTCTGATCCGATTACG---------AATGCCGTCTCCCGGTATCAG   1068

BSNT_01745___   1069 GAGAATAAGGCTGACCAGTATGGGATCGAGTTGACAGAGAACAGAGAAGC   1118
                     ||.||....||.||||..||.||.||||||.||||.|..|||.|.|||||
RBAM_010490__   1069 GAAAACGCCGCCGACCGTTACGGCATCGAGCTGACCGGAAACCGGGAAGC   1118

BSNT_01745___   1119 CGCTGTTAAAACGTTTCAGGATTTGGCCGTGACGGGGCTGAGCCAGGTTG   1168
                     .||..||.|.|||||||||||||||||||..|||||.|||||||.|||..
RBAM_010490__   1119 GGCGATTGAGACGTTTCAGGATTTGGCCGATACGGGACTGAGCCGGGTCA   1168

BSNT_01745___   1169 ATCCTCCGGTGCTTGTGAAGATTTTCAGAGGCAGCCATCCTTCGATCATG   1218
                     |.||.|||.|.||.||.||.|||||||||||.|||||.||.|||||||||
RBAM_010490__   1169 ACCCGCCGTTTCTCGTCAAAATTTTCAGAGGGAGCCACCCGTCGATCATG   1218

BSNT_01745___   1219 GAACGGATTCAACATGCGGAGAAAGAAGAGAATGCGCCGGAACATCAGGA   1268
                     ||.||||||.|||||||.|||.|||||                       
RBAM_010490__   1219 GAGCGGATTGAACATGCTGAGGAAGAA-----------------------   1245

BSNT_01745___   1269 TGCTGACAAATAA   1281
                            ||||||
RBAM_010490__   1246 -------AAATAA   1251


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