Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01744 and RBAM_010480

See Amino acid alignment / Visit BSNT_01744 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:27
# Commandline: needle
#    -asequence dna-align/BSNT_01744___yhfM.1.9828.seq
#    -bsequence dna-align/RBAM_010480___yhfM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01744___yhfM-RBAM_010480___yhfM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01744___yhfM-RBAM_010480___yhfM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01744___yhfM
# 2: RBAM_010480___yhfM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 417
# Identity:     276/417 (66.2%)
# Similarity:   276/417 (66.2%)
# Gaps:          42/417 (10.1%)
# Score: 830.0
# 
#
#=======================================

BSNT_01744___      1 ATGAAAAAAATAGTGGCAGCCATCGTGGTAATCGGTCTTGTGTTTATCGC     50
                     ||||||||||||.|.||....||.||.|||||||..|||.||.||||.||
RBAM_010480__      1 ATGAAAAAAATAATCGCGTTTATTGTAGTAATCGCCCTTTTGGTTATTGC     50

BSNT_01744___     51 ATTTTTTTATCTTTACAGCCGATCAGGCGATGTGTATCAATCGGTAG--A     98
                     .||.||.|||.|.||||||||..|.||||||||||.||.|||  .||  |
RBAM_010480__     51 TTTCTTCTATGTATACAGCCGGACCGGCGATGTGTTTCCATC--AAGCAA     98

BSNT_01744___     99 CGCGGATTTGATCACACTGTCTTCAAG--CGGCCAGGAAGATATCGAGAT    146
                     |||.|||.||||.|..||||||  .||  |||..|..||||.|||.|.||
RBAM_010480__     99 CGCAGATCTGATTATTCTGTCT--GAGCACGGAAAAAAAGAAATCAAAAT    146

BSNT_01744___    147 TGAAAAAAGACAGCACGTCAAAGATATGCTGGATATTATGAATCAGGGAA    196
                     |.||.|.||.|||.|.||.|||||||||||.|||||..||||.||.||||
RBAM_010480__    147 TAAAGACAGGCAGAATGTAAAAGATATGCTCGATATCTTGAACCAAGGAA    196

BSNT_01744___    197 AACAGGTGAAGACAGA--AAAAACATCAGCCCCTGATTACGAAGGGACAA    244
                     ||||.||.|| ||.||  ||||.|.| |.|.||.||||||||.||.||..
RBAM_010480__    197 AACAAGTCAA-ACTGACCAAAAGCGT-ATCTCCCGATTACGACGGAACGG    244

BSNT_01744___    245 TCAAGTTTCATAAAGACCGGTATGACTCATTCAGACTATGGATTGACGGC    294
                     ||||.|..|||.|||||||.|..||.||||||||..|.|||.|.||.|||
RBAM_010480__    245 TCAAATACCATGAAGACCGTTTCGATTCATTCAGCATGTGGCTCGAAGGC    294

BSNT_01744___    295 AGCCAGCAAGCCGTTT------TTTCGAAGGAT---GGCACATACTACAA    335
                     .||.|         ||      |.|..|||.||   ..|||.||.|||||
RBAM_010480__    295 GGCAA---------TTATATGCTGTACAAGTATAAAAACACGTATTACAA    335

BSNT_01744___    336 ATTGA----GCAAAAATGATACAAAGGCGCTGCTAAATATTATTAAAAAA    381
                     |.|||    ||    |||||||.|||....|||.||..||.|||||..||
RBAM_010480__    336 ACTGACCCGGC----ATGATACGAAGCTTGTGCAAAGCATCATTAAGGAA    381

BSNT_01744___    382 GAA--GCAAAGGATTGA    396
                     |||  |||.||  .|||
RBAM_010480__    382 GAATCGCAGAG--CTGA    396


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