Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01743 and RBAM_010470
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:27
# Commandline: needle
# -asequence dna-align/BSNT_01743___yhfL.1.9828.seq
# -bsequence dna-align/RBAM_010470___yhfL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01743___yhfL-RBAM_010470___yhfL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01743___yhfL-RBAM_010470___yhfL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01743___yhfL
# 2: RBAM_010470___yhfL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1652
# Identity: 1151/1652 (69.7%)
# Similarity: 1151/1652 (69.7%)
# Gaps: 172/1652 (10.4%)
# Score: 4025.5
#
#
#=======================================
BSNT_01743___ 1 TTGGCTTCAATAATGAATGACTATTCATTCACTTTAAGGGGTGGGAGAAT 50
||
RBAM_010470__ 1 ------------------------------------------------AT 2
BSNT_01743___ 51 GAATCTTGTTTCAAAATTGGAAGAAACAGCATCTGAGAAGCCCGACAGCA 100
||||||.|||||.||||||||||||||.|||||..||||.||.||.| |
RBAM_010470__ 3 GAATCTGGTTTCCAAATTGGAAGAAACGGCATCGCAGAAACCGGAAA--A 50
BSNT_01743___ 101 TC--GCATGCAGGTTTAAAGATCACATGATGACGTATCAAGAGCTG---- 144
.| ||.||...||||.|||||||....|||||||||.|.||||||
RBAM_010470__ 51 ACCAGCTTGTCTGTTTCAAGATCAGTACATGACGTATGAGGAGCTGGCAG 100
BSNT_01743___ 145 ----AATGAATATATTCAGCGATTTGCGGACGGCCTTCAGGAGGCC---G 187
|||.|| ||| ||||||..|||||.| |||||.| |
RBAM_010470__ 101 GTAAAATCAA-------AGC-ATTTGCAAACGGCTT---GGAGGACAGGG 139
BSNT_01743___ 188 GTATGGAGAAAGGGGACCATCTAGCTTTGCTGCTTGGCAATTCGCCTGAT 237
|..||.|.||||||||.|||||.||..|||||||.||.|||.||||||||
RBAM_010470__ 140 GACTGAAAAAAGGGGATCATCTCGCGCTGCTGCTCGGAAATACGCCTGAT 189
BSNT_01743___ 238 TTTATCATCGCGTTTTTTGGCGCTTTAAAAGCTGGGATCGTGGTTGTTCC 287
|||.|.||.||||||||.|||||.||||||||.||.||.||.||..|.||
RBAM_010470__ 190 TTTGTTATTGCGTTTTTCGGCGCGTTAAAAGCGGGAATTGTCGTCATACC 239
BSNT_01743___ 288 CATCAATCCGTTGTACACGCCGACAGAAATTGGTTATATGCTGACAAATG 337
..|.||||||...||.||.||..|||||||.|..||.|||||||.|||.|
RBAM_010470__ 240 TGTTAATCCGGCATATACACCTTCAGAAATCGCATACATGCTGAAAAACG 289
BSNT_01743___ 338 GCGATGTAAAGGCGATCGTGGGCGTTAGCCAGCTT----TTGCCGCTTTA 383
|||||||.||.|||||||..||| |.|.|.||| ||.||| |.|.
RBAM_010470__ 290 GCGATGTCAAAGCGATCGCCGGC---ATCGACCTTTTAATTCCCG-TATT 335
BSNT_01743___ 384 TGAGAGCATGCATGAATCGCTGCCAAAGGTTGAGCTCGTCATTTTATGCC 433
|||.|||.||||.|..||||||||...|.|.||||...|||||.|..|||
RBAM_010470__ 336 TGAAAGCCTGCACGGCTCGCTGCCGCTGCTGGAGCATATCATTATCAGCC 385
BSNT_01743___ 434 AGACGGGGGAGGCAGAGCCGGAA-GCT---------GCGGACCCAGAGGT 473
|||| .||||| ||| ||| |..||||| |
RBAM_010470__ 386 AGAC------AGCAGA----GAACGCTCCATCGACAGAAGACCC-----T 420
BSNT_01743___ 474 CA-----GGATGAAAATGACAACGTTTGCAAAAATATTGCGGCCGAC--A 516
|| |..|.|||||||||||||||||||||||..|..|.|||.| |
RBAM_010470__ 421 CAATTGCGCTTAAAAATGACAACGTTTGCAAAAATGCTCTGCCCGGCGGA 470
BSNT_01743___ 517 TCTGCTGCTAAACAAAACCAAGAACTTGTCC-CTGATGATACCGCGGTTA 565
.| ||.||..|||..|.|| ||..|||||| ..||||||||.||.||.|
RBAM_010470__ 471 GC-GCAGCAGAACTTATCC--GATATTGTCCAAAGATGATACTGCCGTCA 517
BSNT_01743___ 566 TTTTATATACGTCAGGAACGACTGGAAAACCGAAAGGCGCAATGCTGACT 615
|||||||.||.|||||.|||||.|||||||||||||||||.|||||.||.
RBAM_010470__ 518 TTTTATACACCTCAGGGACGACCGGAAAACCGAAAGGCGCCATGCTCACC 567
BSNT_01743___ 616 CATCAGAATTTGTACAGCAATGCCAACGATGTCGCAGGCTATTTGGGAAT 665
|||||||||.|.|.|..||||||.||.||||||||.||.||.||.|||||
RBAM_010470__ 568 CATCAGAATCTTTTCTCCAATGCAAATGATGTCGCCGGATACTTAGGAAT 617
BSNT_01743___ 666 GGATGAGAGGGACAA---TGTGGTCTGC-GCTCTTCCCATGTTTCACGTG 711
|.||||||..||||| |||| || ||..|.||.|||||||||||.
RBAM_010470__ 618 GAATGAGAAAGACAAAATTGTG----GCGGCATTGCCGATGTTTCACGTT 663
BSNT_01743___ 712 TTTTGTTTAACCGTCTGTATGAATGCACCGCTGATGAGCGGCGCAACTGT 761
||||||||||||||.|||||||||||.||.|||||||||||.||...|||
RBAM_010470__ 664 TTTTGTTTAACCGTTTGTATGAATGCGCCTCTGATGAGCGGAGCGTGTGT 713
BSNT_01743___ 762 CTTGATTGAGCCTCAATTCAGTCCGGCATCTGTTTTTAAGCTTGTTAGGC 811
|||.||.|||||.||||||||.|||||.|||||.|||||.||..||| ..
RBAM_010470__ 714 CTTAATCGAGCCGCAATTCAGCCCGGCTTCTGTGTTTAAACTGATTA-AA 762
BSNT_01743___ 812 AGCAG-CAGGCGACCATTTTTGCCGGTGTGCCTACAATGTATAACTACTT 860
|||.| |||||.||||||||||||||.||.||.||.|||||||||||..|
RBAM_010470__ 763 AGCCGTCAGGCAACCATTTTTGCCGGCGTTCCGACGATGTATAACTATCT 812
BSNT_01743___ 861 GTTTCAGCATGAAAACGGAAAGAAAGATGATTTTTCTTCGATCCGGCTGT 910
||.|||..|.||..||||.|||...||.||||||.|.||..||.|.||||
RBAM_010470__ 813 GTATCAATACGAGCACGGCAAGGCGGAGGATTTTGCGTCCGTCAGACTGT 862
BSNT_01743___ 911 GCATTTCGGGAGGCGCGGCC---ATGCCAGTCGC---GTTGCTGACGGCG 954
||||||| |||||.|||| |||||.||||| |||||.|| ||
RBAM_010470__ 863 GCATTTC---AGGCGGGGCCTCTATGCCGGTCGCTCTGTTGCAGA---CG 906
BSNT_01743___ 955 TTTGAAGAAAAATTCGGTGTTACCATTTTGGAAGGCTACGGGCTCTCGGA 1004
||||||.|||..||.|..||.||||||.||||.||.|||||.||.||.||
RBAM_010470__ 907 TTTGAACAAACCTTTGACGTCACCATTCTGGAGGGGTACGGACTTTCTGA 956
BSNT_01743___ 1005 AGCATCACCCGTCACGTGCTTTAACCCGTTTGACAGGGGCAGGAAGCCGG 1054
|||.||.||.||.||.||.|||||.|||||||||.||||.||.|||||.|
RBAM_010470__ 957 AGCGTCTCCGGTTACTTGTTTTAATCCGTTTGACCGGGGGAGAAAGCCCG 1006
BSNT_01743___ 1055 GCTCCATCGGGACAAGTATCTTACATGTCGAAAACAAGGTCGTAGATCCG 1104
||||.||||||||.|.|||.||||||||||||||.||.|||||.|||.||
RBAM_010470__ 1007 GCTCGATCGGGACGAATATTTTACATGTCGAAAATAAAGTCGTCGATACG 1056
BSNT_01743___ 1105 CTCGGACGCGAGCTGCCCGCTCACCAGGTCGGCGAATTGATCGTGAAAGG 1154
|||||||||||..||||||..||.||.||.||.|||||||||||||||||
RBAM_010470__ 1057 CTCGGACGCGAATTGCCCGACCATCAAGTGGGAGAATTGATCGTGAAAGG 1106
BSNT_01743___ 1155 CCCCAATGTGATGAAGGGCTATTATAAAATG-CCGATGGAAACAGAGCAT 1203
.||.|||||||||||.||||||||.||.||| |||| |||.||.|||||.
RBAM_010470__ 1107 GCCGAATGTGATGAAAGGCTATTACAAGATGCCCGA-GGAGACGGAGCAC 1155
BSNT_01743___ 1204 GCATTAAAAGACGGGTGGCTTTATACGGGGGACTTGGC-AAGACGGGATG 1252
||..|.||||||||.|||||.||.|||||.||.||||| ||| ||.||.|
RBAM_010470__ 1156 GCGCTGAAAGACGGCTGGCTGTACACGGGTGATTTGGCGAAG-CGCGACG 1204
BSNT_01743___ 1253 AGGACGGCTATTTTTACATTGTTGACCGGAAAAAAGACATGATCATTGTA 1302
|.|||||.||||||||.||.||.|||.|.||||||||.|||||..|.||.
RBAM_010470__ 1205 AAGACGGTTATTTTTATATCGTCGACAGAAAAAAAGATATGATTCTCGTC 1254
BSNT_01743___ 1303 GGAGGATACAATGTGTATCCGCGGGAGGTGGAGGAGGTGCTGTACAGCCA 1352
||.||||||||.||.||||||||.||.||.||.||.|||||.||||||||
RBAM_010470__ 1255 GGCGGATACAACGTCTATCCGCGCGAAGTAGAAGAAGTGCTCTACAGCCA 1304
BSNT_01743___ 1353 TCCGGACGTCAAGGAGGCGGTTGTCATCGGCGTGCCGGACCCCCAAAGCG 1402
|..||.|.|.||.||.||.||.|||||||||||.||.|||.||.|||..|
RBAM_010470__ 1305 TGAGGGCATTAAAGAAGCCGTGGTCATCGGCGTTCCTGACGCCAAAACGG 1354
BSNT_01743___ 1403 GGGAAGCGGTAAAGGGATATGTGGTGCCGAAACGCTCTGGGG-------- 1444
||||||||||..|.|..|||.|.|||| ||||||
RBAM_010470__ 1355 GGGAAGCGGTGCATGCTTATATAGTGC---------CTGGGGACGGTGAG 1395
BSNT_01743___ 1445 -TAACAGAGGAGGACATCATGCAGCACTGTGAAAAGCATCTGGCAAAATA 1493
|.||||||.|||...|..|..|..|||||||||..|||.||||||||||
RBAM_010470__ 1396 CTGACAGAGCAGGCGGTTTTTGATTACTGTGAAACACATTTGGCAAAATA 1445
BSNT_01743___ 1494 CAAGCGGCCTGCCGCCATTACG-----TTTCTTGACGATATTCCGAAAAA 1538
.||.|||||.||.| |.| ||||||||.||.||||||||.||
RBAM_010470__ 1446 TAAACGGCCGGCGG-----AAGTGGTTTTTCTTGATGAGATTCCGAAGAA 1490
BSNT_01743___ 1539 TGCGACGGGGAAAATGCTCAGACGGGCACTGAGAGATATTTTGCCCCAAT 1588
.|||||.|||||..||||.||.|||||..|..|.||.||..|.||..|||
RBAM_010470__ 1491 CGCGACCGGGAAGCTGCTGAGGCGGGCGGTCCGGGACATGCTTCCGAAAT 1540
BSNT_01743___ 1589 AA 1590
.|
RBAM_010470__ 1541 GA 1542
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