Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01743 and RBAM_010470

See Amino acid alignment / Visit BSNT_01743 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:27
# Commandline: needle
#    -asequence dna-align/BSNT_01743___yhfL.1.9828.seq
#    -bsequence dna-align/RBAM_010470___yhfL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01743___yhfL-RBAM_010470___yhfL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01743___yhfL-RBAM_010470___yhfL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01743___yhfL
# 2: RBAM_010470___yhfL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1652
# Identity:    1151/1652 (69.7%)
# Similarity:  1151/1652 (69.7%)
# Gaps:         172/1652 (10.4%)
# Score: 4025.5
# 
#
#=======================================

BSNT_01743___      1 TTGGCTTCAATAATGAATGACTATTCATTCACTTTAAGGGGTGGGAGAAT     50
                                                                     ||
RBAM_010470__      1 ------------------------------------------------AT      2

BSNT_01743___     51 GAATCTTGTTTCAAAATTGGAAGAAACAGCATCTGAGAAGCCCGACAGCA    100
                     ||||||.|||||.||||||||||||||.|||||..||||.||.||.|  |
RBAM_010470__      3 GAATCTGGTTTCCAAATTGGAAGAAACGGCATCGCAGAAACCGGAAA--A     50

BSNT_01743___    101 TC--GCATGCAGGTTTAAAGATCACATGATGACGTATCAAGAGCTG----    144
                     .|  ||.||...||||.|||||||....|||||||||.|.||||||    
RBAM_010470__     51 ACCAGCTTGTCTGTTTCAAGATCAGTACATGACGTATGAGGAGCTGGCAG    100

BSNT_01743___    145 ----AATGAATATATTCAGCGATTTGCGGACGGCCTTCAGGAGGCC---G    187
                         |||.||       ||| ||||||..|||||.|   |||||.|   |
RBAM_010470__    101 GTAAAATCAA-------AGC-ATTTGCAAACGGCTT---GGAGGACAGGG    139

BSNT_01743___    188 GTATGGAGAAAGGGGACCATCTAGCTTTGCTGCTTGGCAATTCGCCTGAT    237
                     |..||.|.||||||||.|||||.||..|||||||.||.|||.||||||||
RBAM_010470__    140 GACTGAAAAAAGGGGATCATCTCGCGCTGCTGCTCGGAAATACGCCTGAT    189

BSNT_01743___    238 TTTATCATCGCGTTTTTTGGCGCTTTAAAAGCTGGGATCGTGGTTGTTCC    287
                     |||.|.||.||||||||.|||||.||||||||.||.||.||.||..|.||
RBAM_010470__    190 TTTGTTATTGCGTTTTTCGGCGCGTTAAAAGCGGGAATTGTCGTCATACC    239

BSNT_01743___    288 CATCAATCCGTTGTACACGCCGACAGAAATTGGTTATATGCTGACAAATG    337
                     ..|.||||||...||.||.||..|||||||.|..||.|||||||.|||.|
RBAM_010470__    240 TGTTAATCCGGCATATACACCTTCAGAAATCGCATACATGCTGAAAAACG    289

BSNT_01743___    338 GCGATGTAAAGGCGATCGTGGGCGTTAGCCAGCTT----TTGCCGCTTTA    383
                     |||||||.||.|||||||..|||   |.|.|.|||    ||.||| |.|.
RBAM_010470__    290 GCGATGTCAAAGCGATCGCCGGC---ATCGACCTTTTAATTCCCG-TATT    335

BSNT_01743___    384 TGAGAGCATGCATGAATCGCTGCCAAAGGTTGAGCTCGTCATTTTATGCC    433
                     |||.|||.||||.|..||||||||...|.|.||||...|||||.|..|||
RBAM_010470__    336 TGAAAGCCTGCACGGCTCGCTGCCGCTGCTGGAGCATATCATTATCAGCC    385

BSNT_01743___    434 AGACGGGGGAGGCAGAGCCGGAA-GCT---------GCGGACCCAGAGGT    473
                     ||||      .|||||    ||| |||         |..|||||     |
RBAM_010470__    386 AGAC------AGCAGA----GAACGCTCCATCGACAGAAGACCC-----T    420

BSNT_01743___    474 CA-----GGATGAAAATGACAACGTTTGCAAAAATATTGCGGCCGAC--A    516
                     ||     |..|.|||||||||||||||||||||||..|..|.|||.|  |
RBAM_010470__    421 CAATTGCGCTTAAAAATGACAACGTTTGCAAAAATGCTCTGCCCGGCGGA    470

BSNT_01743___    517 TCTGCTGCTAAACAAAACCAAGAACTTGTCC-CTGATGATACCGCGGTTA    565
                     .| ||.||..|||..|.||  ||..|||||| ..||||||||.||.||.|
RBAM_010470__    471 GC-GCAGCAGAACTTATCC--GATATTGTCCAAAGATGATACTGCCGTCA    517

BSNT_01743___    566 TTTTATATACGTCAGGAACGACTGGAAAACCGAAAGGCGCAATGCTGACT    615
                     |||||||.||.|||||.|||||.|||||||||||||||||.|||||.||.
RBAM_010470__    518 TTTTATACACCTCAGGGACGACCGGAAAACCGAAAGGCGCCATGCTCACC    567

BSNT_01743___    616 CATCAGAATTTGTACAGCAATGCCAACGATGTCGCAGGCTATTTGGGAAT    665
                     |||||||||.|.|.|..||||||.||.||||||||.||.||.||.|||||
RBAM_010470__    568 CATCAGAATCTTTTCTCCAATGCAAATGATGTCGCCGGATACTTAGGAAT    617

BSNT_01743___    666 GGATGAGAGGGACAA---TGTGGTCTGC-GCTCTTCCCATGTTTCACGTG    711
                     |.||||||..|||||   ||||    || ||..|.||.|||||||||||.
RBAM_010470__    618 GAATGAGAAAGACAAAATTGTG----GCGGCATTGCCGATGTTTCACGTT    663

BSNT_01743___    712 TTTTGTTTAACCGTCTGTATGAATGCACCGCTGATGAGCGGCGCAACTGT    761
                     ||||||||||||||.|||||||||||.||.|||||||||||.||...|||
RBAM_010470__    664 TTTTGTTTAACCGTTTGTATGAATGCGCCTCTGATGAGCGGAGCGTGTGT    713

BSNT_01743___    762 CTTGATTGAGCCTCAATTCAGTCCGGCATCTGTTTTTAAGCTTGTTAGGC    811
                     |||.||.|||||.||||||||.|||||.|||||.|||||.||..||| ..
RBAM_010470__    714 CTTAATCGAGCCGCAATTCAGCCCGGCTTCTGTGTTTAAACTGATTA-AA    762

BSNT_01743___    812 AGCAG-CAGGCGACCATTTTTGCCGGTGTGCCTACAATGTATAACTACTT    860
                     |||.| |||||.||||||||||||||.||.||.||.|||||||||||..|
RBAM_010470__    763 AGCCGTCAGGCAACCATTTTTGCCGGCGTTCCGACGATGTATAACTATCT    812

BSNT_01743___    861 GTTTCAGCATGAAAACGGAAAGAAAGATGATTTTTCTTCGATCCGGCTGT    910
                     ||.|||..|.||..||||.|||...||.||||||.|.||..||.|.||||
RBAM_010470__    813 GTATCAATACGAGCACGGCAAGGCGGAGGATTTTGCGTCCGTCAGACTGT    862

BSNT_01743___    911 GCATTTCGGGAGGCGCGGCC---ATGCCAGTCGC---GTTGCTGACGGCG    954
                     |||||||   |||||.||||   |||||.|||||   |||||.||   ||
RBAM_010470__    863 GCATTTC---AGGCGGGGCCTCTATGCCGGTCGCTCTGTTGCAGA---CG    906

BSNT_01743___    955 TTTGAAGAAAAATTCGGTGTTACCATTTTGGAAGGCTACGGGCTCTCGGA   1004
                     ||||||.|||..||.|..||.||||||.||||.||.|||||.||.||.||
RBAM_010470__    907 TTTGAACAAACCTTTGACGTCACCATTCTGGAGGGGTACGGACTTTCTGA    956

BSNT_01743___   1005 AGCATCACCCGTCACGTGCTTTAACCCGTTTGACAGGGGCAGGAAGCCGG   1054
                     |||.||.||.||.||.||.|||||.|||||||||.||||.||.|||||.|
RBAM_010470__    957 AGCGTCTCCGGTTACTTGTTTTAATCCGTTTGACCGGGGGAGAAAGCCCG   1006

BSNT_01743___   1055 GCTCCATCGGGACAAGTATCTTACATGTCGAAAACAAGGTCGTAGATCCG   1104
                     ||||.||||||||.|.|||.||||||||||||||.||.|||||.|||.||
RBAM_010470__   1007 GCTCGATCGGGACGAATATTTTACATGTCGAAAATAAAGTCGTCGATACG   1056

BSNT_01743___   1105 CTCGGACGCGAGCTGCCCGCTCACCAGGTCGGCGAATTGATCGTGAAAGG   1154
                     |||||||||||..||||||..||.||.||.||.|||||||||||||||||
RBAM_010470__   1057 CTCGGACGCGAATTGCCCGACCATCAAGTGGGAGAATTGATCGTGAAAGG   1106

BSNT_01743___   1155 CCCCAATGTGATGAAGGGCTATTATAAAATG-CCGATGGAAACAGAGCAT   1203
                     .||.|||||||||||.||||||||.||.||| |||| |||.||.|||||.
RBAM_010470__   1107 GCCGAATGTGATGAAAGGCTATTACAAGATGCCCGA-GGAGACGGAGCAC   1155

BSNT_01743___   1204 GCATTAAAAGACGGGTGGCTTTATACGGGGGACTTGGC-AAGACGGGATG   1252
                     ||..|.||||||||.|||||.||.|||||.||.||||| ||| ||.||.|
RBAM_010470__   1156 GCGCTGAAAGACGGCTGGCTGTACACGGGTGATTTGGCGAAG-CGCGACG   1204

BSNT_01743___   1253 AGGACGGCTATTTTTACATTGTTGACCGGAAAAAAGACATGATCATTGTA   1302
                     |.|||||.||||||||.||.||.|||.|.||||||||.|||||..|.||.
RBAM_010470__   1205 AAGACGGTTATTTTTATATCGTCGACAGAAAAAAAGATATGATTCTCGTC   1254

BSNT_01743___   1303 GGAGGATACAATGTGTATCCGCGGGAGGTGGAGGAGGTGCTGTACAGCCA   1352
                     ||.||||||||.||.||||||||.||.||.||.||.|||||.||||||||
RBAM_010470__   1255 GGCGGATACAACGTCTATCCGCGCGAAGTAGAAGAAGTGCTCTACAGCCA   1304

BSNT_01743___   1353 TCCGGACGTCAAGGAGGCGGTTGTCATCGGCGTGCCGGACCCCCAAAGCG   1402
                     |..||.|.|.||.||.||.||.|||||||||||.||.|||.||.|||..|
RBAM_010470__   1305 TGAGGGCATTAAAGAAGCCGTGGTCATCGGCGTTCCTGACGCCAAAACGG   1354

BSNT_01743___   1403 GGGAAGCGGTAAAGGGATATGTGGTGCCGAAACGCTCTGGGG--------   1444
                     ||||||||||..|.|..|||.|.||||         ||||||        
RBAM_010470__   1355 GGGAAGCGGTGCATGCTTATATAGTGC---------CTGGGGACGGTGAG   1395

BSNT_01743___   1445 -TAACAGAGGAGGACATCATGCAGCACTGTGAAAAGCATCTGGCAAAATA   1493
                      |.||||||.|||...|..|..|..|||||||||..|||.||||||||||
RBAM_010470__   1396 CTGACAGAGCAGGCGGTTTTTGATTACTGTGAAACACATTTGGCAAAATA   1445

BSNT_01743___   1494 CAAGCGGCCTGCCGCCATTACG-----TTTCTTGACGATATTCCGAAAAA   1538
                     .||.|||||.||.|     |.|     ||||||||.||.||||||||.||
RBAM_010470__   1446 TAAACGGCCGGCGG-----AAGTGGTTTTTCTTGATGAGATTCCGAAGAA   1490

BSNT_01743___   1539 TGCGACGGGGAAAATGCTCAGACGGGCACTGAGAGATATTTTGCCCCAAT   1588
                     .|||||.|||||..||||.||.|||||..|..|.||.||..|.||..|||
RBAM_010470__   1491 CGCGACCGGGAAGCTGCTGAGGCGGGCGGTCCGGGACATGCTTCCGAAAT   1540

BSNT_01743___   1589 AA   1590
                     .|
RBAM_010470__   1541 GA   1542


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