Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01742 and RBAM_010460

See Amino acid alignment / Visit BSNT_01742 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:27
# Commandline: needle
#    -asequence dna-align/BSNT_01742___yhfK.1.9828.seq
#    -bsequence dna-align/RBAM_010460___yhfK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01742___yhfK-RBAM_010460___yhfK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01742___yhfK-RBAM_010460___yhfK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01742___yhfK
# 2: RBAM_010460___yhfK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 676
# Identity:     468/676 (69.2%)
# Similarity:   468/676 (69.2%)
# Gaps:          59/676 ( 8.7%)
# Score: 1603.5
# 
#
#=======================================

BSNT_01742___      1 ---ATGAAAGTGTTTTTAATCGGAGCGAACGGACAAATCGGGCA----AA     43
                        ||||||||.|||.|.||||||||.||||||||.|||||.||    ..
RBAM_010460__      1 ATGATGAAAGTATTTCTCATCGGAGCAAACGGACAGATCGGACAGCGGCT     50

BSNT_01742___     44 GACTCGTCTCTTTATTCCAAGATAATCCTGA------TCATTCCATCAGA     87
                     |||..|.||.|||    |||.|      .||      .|||.|..|..|.
RBAM_010460__     51 GACCGGGCTGTTT----CAAAA------AGACGGCACGCATACGCTGCGG     90

BSNT_01742___     88 GCGATGGTCAGAAAAGAAGAACAGAAAGCGTCTCTTGAAGCTGCCGGTGC    137
                     |||||||||.|.|||.||||.|||||||...|.|||.||||.||.||..|
RBAM_010460__     91 GCGATGGTCCGGAAACAAGAGCAGAAAGAAGCGCTTCAAGCCGCGGGAAC    140

BSNT_01742___    138 AGAAGCTGTGCTTGCGAATCTGGAGGGCAGCCCGGAAGAAATC------G    181
                     ||||||.||.|||||..||.||||.||.|||||||||||.|||      |
RBAM_010460__    141 AGAAGCCGTTCTTGCAGATTTGGAAGGAAGCCCGGAAGACATCGCGAAAG    190

BSNT_01742___    182 CCGCTGCGGCAAAAGGCTGTGACGCGATCATTTTCACAGCCGGTTCCGGC    231
                     ||||||      ||||||||||||||||..|.||.||.|||||.||.||.
RBAM_010460__    191 CCGCTG------AAGGCTGTGACGCGATTGTGTTTACCGCCGGATCAGGA    234

BSNT_01742___    232 GGCAGCACAGGCTATGATAAAACGCTGCTGGTGGATCTTGATGGAGCGGC    281
                     ||.|||||.||.||.|||||.|||||..||.|.||||||||.|||||.||
RBAM_010460__    235 GGAAGCACCGGATACGATAAGACGCTTTTGATTGATCTTGACGGAGCCGC    284

BSNT_01742___    282 AAAAGCCATTGAAGCTGCGGACATTGCCGGAATCAAACGGTTTATTATGA    331
                     .|||||.||.|||||.||..|.||.|||||.|||||.|||||.||||||.
RBAM_010460__    285 GAAAGCGATAGAAGCGGCAAAGATAGCCGGCATCAAGCGGTTCATTATGG    334

BSNT_01742___    332 TCAGCGCCCTGCAAGCCCATAACCGTGAAAATTGGAATGAGGCACTCAAA    381
                     |.||||||||.||.||.||||||||.|..|||||||||||.||.||.||.
RBAM_010460__    335 TAAGCGCCCTTCAGGCTCATAACCGCGGCAATTGGAATGAAGCGCTGAAG    384

BSNT_01742___    382 CCTTATTATGTGGCCAAGCATTATGCTGATAAAATTCTGGAAGCGAGCGG    431
                     ||.|||||.|..||.|||||||||||.|||||||||||.|||||||||||
RBAM_010460__    385 CCGTATTACGCCGCAAAGCATTATGCGGATAAAATTCTTGAAGCGAGCGG    434

BSNT_01742___    432 TTTAACCTATACGATTATCCGTCCGGGAGGCCTTCGCAATGAGCCTGGAA    481
                     |.|.||.||||||||||||||.|||||.||..|....|||||.||.||.|
RBAM_010460__    435 TCTGACGTATACGATTATCCGGCCGGGCGGGTTATTAAATGATCCCGGCA    484

BSNT_01742___    482 CGGGAACTGTTTCAGCAGCGAAGGATCTGGAGCGGGGATTTATTTCCCGT    531
                     ||||||.|.|...|||.|||...|||.|.||..|.||.||.|||||..|.
RBAM_010460__    485 CGGGAAATATCAAAGCCGCGGCCGATTTAGAAAGAGGCTTCATTTCAAGA    534

BSNT_01742___    532 GAGGACGTTGCAAAAACGGTCATTGCCTCTTTAGATGAGAAGAATACG--    579
                     ||.||.||.||.||.||.||.||.||.||..|.|||||...|||||||  
RBAM_010460__    535 GACGATGTCGCCAAGACCGTTATCGCATCCCTTGATGAACCGAATACGTA    584

BSNT_01742___    580 -GAAAATCGGGCCTTTGATCTGACAGAAGG-AGATACGCCGATTGCCGAA    627
                      |||||   .||.||.||||||||||..|| || .||||||.|       
RBAM_010460__    585 TGAAAA---AGCATTCGATCTGACAGCGGGCAG-CACGCCGGT-------    623

BSNT_01742___    628 GCATTGAA-----GAAACTATGA---    645
                      ||.||||     |||||.||.|   
RBAM_010460__    624 -CAGTGAAGCGCTGAAACAATTATAG    648


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