Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01721 and RBAM_010320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:24
# Commandline: needle
# -asequence dna-align/BSNT_01721___yhfA.1.9828.seq
# -bsequence dna-align/RBAM_010320___yhfA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01721___yhfA-RBAM_010320___yhfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01721___yhfA-RBAM_010320___yhfA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01721___yhfA
# 2: RBAM_010320___yhfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1427
# Identity: 1008/1427 (70.6%)
# Similarity: 1008/1427 (70.6%)
# Gaps: 76/1427 ( 5.3%)
# Score: 3356.5
#
#
#=======================================
BSNT_01721___ 1 ATGATGGAAGTCGGGATTTTGTCTGTCCATGTTCTGTATGTGTTTTTTAT 50
.|||...||||..|.|..||.||.|||.|.||.|||||...||||||
RBAM_010320__ 1 ---TTGGGGATCGGCGTCTACTCGGTACATCTGCTTTATGTTGCTTTTAT 47
BSNT_01721___ 51 CGGTGCAATTATCCTATTTATGCTGCTGAGAAAAGACACGACATTTATTT 100
||..||.||||||.|.||||||||.||.||.|||||.||.||.|||||||
RBAM_010320__ 48 CGCGGCCATTATCGTTTTTATGCTCCTCAGGAAAGATACAACCTTTATTT 97
BSNT_01721___ 101 CTCTATTCGGCATTTTTATCATATCGCTATGGGCCAGCCAATCACTTTCA 150
|.||...||||||||||.|.||..||||||||.|.|..||.|||.|.||.
RBAM_010320__ 98 CACTCGCCGGCATTTTTGTGATTGCGCTATGGACGACGCATTCATTCTCC 147
BSNT_01721___ 151 GCTTCTGTCAGCAGTTTATTCCACAGCTTTATCTATGCGGCCGGCGAACT 200
|||||.|||||||||.|.||.||||||||.|..|||||.|||||.|||.|
RBAM_010320__ 148 GCTTCGGTCAGCAGTCTGTTTCACAGCTTCACGTATGCAGCCGGAGAATT 197
BSNT_01721___ 201 GCTGCCCACGATTTTCATCATTTGCTTTATCGTTTCAATGAGTGATTTGT 250
||||||.||||||||.||||||||.||||||||..|.|||||.|...|.|
RBAM_010320__ 198 GCTGCCGACGATTTTTATCATTTGTTTTATCGTGGCGATGAGCGGCCTTT 247
BSNT_01721___ 251 TAACAAAAACAGGGATAAATGAAGCGATGATTTCTCCCTTTGCAAGCCTT 300
|.||.|||||.||.||.||||||||||||||||||||.|||||||..||.
RBAM_010320__ 248 TGACCAAAACCGGTATTAATGAAGCGATGATTTCTCCGTTTGCAAAGCTG 297
BSNT_01721___ 301 GTGAGAGGGCCTG-TGACTGCCTATTGGCTGATTGGGGGCCTGATGTTCG 349
.|||.||||||.| ||.| ||.||||||.|.||.||..|.||||||||.|
RBAM_010320__ 298 ATGAAAGGGCCGGCTGTC-GCGTATTGGGTTATCGGCTGTCTGATGTTTG 346
BSNT_01721___ 350 CCATTTCTCTCTTCTTCTGGCCTTCTCC--GGGTGTCGCTTTGATCGGCG 397
||||.|||||.||.||||||||.||.|| |||||.||| |||||||||
RBAM_010320__ 347 CCATCTCTCTTTTTTTCTGGCCGTCACCAGGGGTGGCGC--TGATCGGCG 394
BSNT_01721___ 398 CCGTCCTGCTCCCCGCAGCCGCACGTGCCGG--TTTGACGCCTCTTGCCG 445
|.||.|||||.||||||||....||.||.|| ||| |.||..|.||||
RBAM_010320__ 395 CTGTGCTGCTTCCCGCAGCGATCCGGGCAGGCCTTT--CTCCGATCGCCG 442
BSNT_01721___ 446 CGGCCATGGCCATGAACTTATTCGGACACGGTTTTGCCCTGTCAGGAGAC 495
||||.|||||.||||||.|.|||||.|||||.||.||..|.||.||.||.
RBAM_010320__ 443 CGGCAATGGCGATGAACCTGTTCGGCCACGGATTCGCTTTATCGGGGGAT 492
BSNT_01721___ 496 TTTGTCATTCAGGCGGCGCCAAAGCTGACTGCAGATGCAGCAGGCATTCC 545
|..||||||||||||||.||.||..|.||.||.|||||.||.||||||||
RBAM_010320__ 493 TACGTCATTCAGGCGGCCCCGAAATTAACGGCCGATGCCGCGGGCATTCC 542
BSNT_01721___ 546 AGTCGGTGATGTCGTCTCGGCCAGCATTCCGCTTGTGCTGATTATGGGTG 595
.||..|.||||||.|...|||.||.||||||||.||..||||.||||| |
RBAM_010320__ 543 CGTGAGCGATGTCATGCAGGCAAGTATTCCGCTCGTTTTGATCATGGG-G 591
BSNT_01721___ 596 T----GACAACAACAACCGCTGCCTTTATCATGATTCA-GCGCGAACGCA 640
| |||.||||..|||||| ||.|||.|.| ||| |||.||.||.|
RBAM_010320__ 592 TTAACGACGACAATCACCGCT---TTCATCCTCA-TCATGCGGGATCGAA 637
BSNT_01721___ 641 AAAAACAGGAGCATCCCGCTTCTTTTT------CCCCCGTTCTTTCCGGC 684
|||||..|.|| .|||.|.|||..|| |.||.||||||| ||
RBAM_010320__ 638 AAAAAACGAAG--GCCCCCCTCTCCTTGGACAGCTCCGGTTCTTT--GG- 682
BSNT_01721___ 685 GAACAAGACAACTCGCTGTACTTGCCAAAACGCCTGCGGTCCATACTGGC 734
|.||||.| .||||..||||.|||...||..||...||.|||.|
RBAM_010320__ 683 -----ACACAAGT--ATGTATCTGCCGAAAAAACTCAGGGTGATCCTGTC 725
BSNT_01721___ 735 TTTTTTGATTCCGCTTGCCTTTCTTGCAGATATCGCCTGCATGCTCTTGT 784
..||||.||||||||||..|||||.||.|||||...|||.|||.|| ||
RBAM_010320__ 726 GGTTTTCATTCCGCTTGTTTTTCTCGCCGATATTATCTGTATGATC--GT 773
BSNT_01721___ 785 TTA--ACCTACAAGGAAATGATGCCACCGCGTTAATTGGCGGGTCTGCAA 832
.|| .|||.||||||||.|||||.||.||..|..|.||.||..|.||.|
RBAM_010320__ 774 ATACCGCCTGCAAGGAAACGATGCGACGGCACTCGTCGGAGGAACCGCGA 823
BSNT_01721___ 833 TTTGTATCCTCTTTACCGTTCATTTTTTCGTGTATAAGCATAAAGGGC-- 880
|..|.||.|||.|.|.|.|||||||..| ||||| ||||||.||
RBAM_010320__ 824 TCGGCATTCTCCTGATCATTCATTTCAT--TGTAT----ATAAAGAGCGG 867
BSNT_01721___ 881 ----TTGAAAAAATCACCGGCTATTTTATTGACGGATTTAAGTTCGGTTT 926
|.|||||.|||||||..||||||||.|.|||.|||.|.|||||.||
RBAM_010320__ 868 CATTTAGAAAAGATCACCGAGTATTTTATCGGCGGTTTTCAATTCGGCTT 917
BSNT_01721___ 927 TAAGGTTTTCGGCCCCGTCATCCCGATTGCCGCTTTCTTTTATCTTGGCG 976
|||.||.||||||||||||||.|||||.||.||.|||||||||||.||.|
RBAM_010320__ 918 TAAAGTATTCGGCCCCGTCATTCCGATCGCGGCCTTCTTTTATCTCGGTG 967
BSNT_01721___ 977 ACTCAGGCTATGAAAGCATACTGGGCACTTCACTCCCTAAAGGTTCCCAC 1026
||.|.||.|.|.||||.||..||..|||.||.||.||.|||||.||....
RBAM_010320__ 968 ACGCGGGGTTTAAAAGTATTTTGAACACCTCGCTGCCGAAAGGATCTGCG 1017
BSNT_01721___ 1027 GGCATTGTCAACGATCTCGGCATT-GCTTTATCCCATATGATGCCTATGT 1075
||.||.|||||.||.||||| ||| ||..|.||||||....|.||.||||
RBAM_010320__ 1018 GGGATCGTCAATGACCTCGG-ATTGGCCCTGTCCCATTCTTTTCCGATGT 1066
BSNT_01721___ 1076 CAAAGGAG-CTTGCCGCCGCTGCAT-----TAACTGCCGCTGGAGCCATA 1119
| .|||| .|| ||||| |||| |..|.||.|..||.||.||.
RBAM_010320__ 1067 C--CGGAGAATT--CGCCG--GCATCGCCCTGGCCGCAGTCGGTGCGATT 1110
BSNT_01721___ 1120 ACAGGCCTTGACGGCTCAGGATTTTCTGGCATTTCTCTCGCCGGCTCCAT 1169
||.||.||.|||||.|||||.|||||.||.||.|||||.||.|||||.||
RBAM_010320__ 1111 ACCGGGCTCGACGGGTCAGGGTTTTCCGGTATATCTCTTGCAGGCTCGAT 1160
BSNT_01721___ 1170 CGCAAAGCTCTTTTCGTCCGCTCTCCATGCCGATCCCGCCGTTCTGACCG 1219
.||||||||.|||||..||||.||.|||.|.||.||.||||||.|.||.|
RBAM_010320__ 1161 GGCAAAGCTGTTTTCCGCCGCGCTTCATACGGACCCGGCCGTTTTAACGG 1210
BSNT_01721___ 1220 CGCTCGGACAAATCTCTGCCATCTGGGTGGGCGGAGGAACACTGATCCCA 1269
||||.||.||.||.||.||.||||||||.||.||.||||||.||.||||.
RBAM_010320__ 1211 CGCTGGGCCAGATTTCAGCGATCTGGGTCGGGGGCGGAACATTGGTCCCT 1260
BSNT_01721___ 1270 TGGGCGTTGATTCCCGCCGCGGCCATTTGCAAAGTTGATCCTTTTGAGCT 1319
|||||..||||.|||||.|||||.|||||.||||||||.||.||||||||
RBAM_010320__ 1261 TGGGCACTGATCCCCGCTGCGGCTATTTGTAAAGTTGACCCGTTTGAGCT 1310
BSNT_01721___ 1320 TGCCAGAAAAAACTTCATTCCCGTCGCGATTGGCCTTTTGGTGACAACCA 1369
||||||.||||||||.||.||.||.|||...||.||..|.||.|||||.|
RBAM_010320__ 1311 TGCCAGGAAAAACTTTATCCCGGTTGCGGCCGGGCTAGTCGTCACAACGA 1360
BSNT_01721___ 1370 TCGCAGCTGTGATGATGCT----TTGA 1392
||||.||..|.||.||.|| |.|
RBAM_010320__ 1361 TCGCCGCCATCATCATTCTCCCGTAG- 1386
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